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(-) Description

Title :  MODEL FOR BACTERIAL PARM FILAMENT
 
Authors :  A. Orlova, E. C. Garner, V. E. Galkin, J. Heuser, R. D. Mullins, E. H. Egelman
Date :  03 Aug 07  (Deposition) - 18 Sep 07  (Release) - 24 Feb 09  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  16.00
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (10x)
Keywords :  Filament Model, Actin-Like Protein, Helical Polymer, Plasmid, Plasmid Partition, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Orlova, E. C. Garner, V. E. Galkin, J. Heuser, R. D. Mullins, E. H. Egelman
The Structure Of Bacterial Parm Filaments.
Nat. Struct. Mol. Biol. V. 14 921 2007
PubMed-ID: 17873883  |  Reference-DOI: 10.1038/NSMB1300
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PLASMID SEGREGATION PROTEIN PARM
    Chains: A
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Synonym: PROTEIN STBA, PARA LOCUS 36 KDA PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (10x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2QU4)

(-) Sites  (0, 0)

(no "Site" information available for 2QU4)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2QU4)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2QU4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2QU4)

(-) Exons   (0, 0)

(no "Exon" information available for 2QU4)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:320
 aligned with PARM_ECOLX | P11904 from UniProtKB/Swiss-Prot  Length:320

    Alignment length:320
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320
           PARM_ECOLX     1 MLVFIDDGSTNIKLQWQESDGTIKQHISPNSFKREWAVSFGDKKVFNYTLNGEQYSFDPISPDAVVTTNIAWQYSDVNVVAVHHALLTSGLPVSEVDIVCTLPLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQELDELDSLLIIDLGGTTLDISQVMGKLSGISKIYGDSSLGVSLVTSAVKDALSLARTKGSSYLADDIIIHRKDNNYLKQRINDENKISIVTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAELICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIGN 320
               SCOP domains d2qu4a1 A:1-157 Plasmid segregation protein ParM                                                                                                             d2qu4a2 A:158-320 Plasmid segregation protein ParM                                                                                                                  SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains StbA-2qu4A01 A:1-318                                                                                                                                                                                                                                                                                                          -- Pfam domains
         Sec.struct. author .eeeeee....eeeeee.....eeeeee...ee.............eee....eeee...........hhhhhhhhhhhhhhhhhhhhhh....eeeeeeeehhhhhh......hhhhhhhhhhhh....ee......eeeeeeeee.hhhhhhhhhhh.....eeeeeee....eeeeeee.hhh.eeeeeee....hhhhhhhhhhhhh...hhhhhhhhhhhhhh..hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhh.hhh.ee......hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qu4 A   1 MLVFIDDGSTNIKLQWQESDGTIKQHISPNSFKREWAVSFGDKKVFNYTLNGEQYSFDPISPDAVVTTNIAWQYSDVNVVAVHHALLTSGLPVSEVDIVCTLPLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQELDELDSLLIIDLGGTTLDISQVMGKLSGISKIYGDSSLGVSLVTSAVKDALSLARTKGSSYLADDIIIHRKDNNYLKQRINDENKISIVTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAELICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIGN 320
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2QU4)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: Actin_ATPase (173)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A   (PARM_ECOLX | P11904)
biological process
    GO:0030541    plasmid partitioning    Any process in which plasmids are segregated or distributed into daughter cells upon cell division.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PARM_ECOLX | P11904: 1mwk 1mwm 2zgy 2zgz 2zhc 3iku 3iky 4a61 4a62 4a6j 5aey 5ai7

(-) Related Entries Specified in the PDB File

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