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(-) Description

Title :  ACTIN-LIKE PARM PROTEIN BOUND TO AMPPNP
 
Authors :  T. A. M. Bharat, G. N. Murshudov, C. Sachse, J. Lowe
Date :  12 Jan 15  (Deposition) - 22 Apr 15  (Release) - 15 Jul 15  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  4.30
Chains :  Asym./Biol. Unit :  A,B,C,D,E
Keywords :  Structural Protein, Bacterial Cytoskeleton, Plasmid Segregation, Actin- Like Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. A. M. Bharat, G. N. Murshudov, C. Sachse, J. Lowe
Structures Of Actin-Like Parm Filaments Show Architecture Of Plasmid-Segregating Spindles.
Nature V. 523 106 2015
PubMed-ID: 25915019  |  Reference-DOI: 10.1038/NATURE14356

(-) Compounds

Molecule 1 - PLASMID SEGREGATION PROTEIN PARM
    Chains: A, B, C, D, E
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Variant: AI
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Other Details: PARM WAS INCUBATED WITH AMPPNP
    Synonym: PARA LOCUS 36 KDA PROTEIN, PROTEIN STBA, PARM

 Structural Features

(-) Chains, Units

  12345
Asymmetric/Biological Unit : ABCDE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 5)

Asymmetric/Biological Unit (1, 5)
No.NameCountTypeFull Name
1ANP5Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:8 , SER A:9 , THR A:10 , ASN A:11 , LYS A:13 , GLU A:148 , GLY A:172 , GLY A:173 , THR A:174 , VAL A:199 , ASP A:223 , ILE A:227 , GLY A:281 , GLN A:308BINDING SITE FOR RESIDUE ANP A 500
2AC2SOFTWAREGLY B:8 , SER B:9 , THR B:10 , ASN B:11 , LYS B:13 , GLU B:148 , GLY B:172 , GLY B:173 , THR B:174 , VAL B:199 , ASP B:223 , ILE B:227 , GLY B:281 , GLN B:308BINDING SITE FOR RESIDUE ANP B 500
3AC3SOFTWAREGLY C:8 , SER C:9 , THR C:10 , ASN C:11 , LYS C:13 , GLU C:148 , GLY C:172 , GLY C:173 , THR C:174 , VAL C:199 , ASP C:223 , ILE C:227 , GLY C:281 , GLN C:308BINDING SITE FOR RESIDUE ANP C 500
4AC4SOFTWAREGLY D:8 , SER D:9 , THR D:10 , ASN D:11 , LYS D:13 , GLU D:148 , GLY D:172 , GLY D:173 , THR D:174 , VAL D:199 , ASP D:223 , ILE D:227 , GLY D:281 , GLN D:308BINDING SITE FOR RESIDUE ANP D 500
5AC5SOFTWAREGLY E:8 , SER E:9 , THR E:10 , ASN E:11 , LYS E:13 , GLU E:148 , GLY E:172 , GLY E:173 , THR E:174 , VAL E:199 , ASP E:223 , ILE E:227 , GLY E:281 , GLN E:308BINDING SITE FOR RESIDUE ANP E 500

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5AEY)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5AEY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AEY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AEY)

(-) Exons   (0, 0)

(no "Exon" information available for 5AEY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:318
                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee...eeeeeeee...eeeeeeee..ee.............eee....eeee...........hhhhhhhhhhhhhhhhhhhh......eeeeeeeehhhhhh......hhhhhhhhhhhh....ee......eeeeeeeee.hhhhhhhhhhh.....eeeeeee....eeeeeee....eeeeeeee....hhhhhhhhhhhhhhh....hhhhhhhhhhh..hhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhh..hhh.ee...hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5aey A   1 MLVFIDDGSTNIKLQWQESDGTIKQHISPNSFKREWAVSFGDKKVFNYTLNGEQYSFDPISPDAVVTTNIAWQYSDVNVVAVHHALLTSGLPVSEVDIVCTLPLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQELDELDSLLIIDLGGTTLDISQVMGKLSGISKIYGDSSLGVSLVTSAVKDALSLARTKGSSYLADDIIIHRKDNNYLKQRINDENKISIVTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAELICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLI 318
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310        


Chain B from PDB  Type:PROTEIN  Length:318
                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee...eeeeeeee...eeeeeeee..ee.............eee....eeee...........hhhhhhhhhhhhhhhhhhhh......eeeeeeeehhhhhh......hhhhhhhhhhhh....ee......eeeeeeeee.hhhhhhhhhhh.....eeeeeee....eeeeeee....eeeeeeee....hhhhhhhhhhhhhhh....hhhhhhhhhhh..hhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhh..hhh.ee...hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5aey B   1 MLVFIDDGSTNIKLQWQESDGTIKQHISPNSFKREWAVSFGDKKVFNYTLNGEQYSFDPISPDAVVTTNIAWQYSDVNVVAVHHALLTSGLPVSEVDIVCTLPLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQELDELDSLLIIDLGGTTLDISQVMGKLSGISKIYGDSSLGVSLVTSAVKDALSLARTKGSSYLADDIIIHRKDNNYLKQRINDENKISIVTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAELICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLI 318
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310        


Chain C from PDB  Type:PROTEIN  Length:318
                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee...eeeeeeee...eeeeeeee..ee.............eee....eeee...........hhhhhhhhhhhhhhhhhhhh......eeeeeeeehhhhhh......hhhhhhhhhhhh....ee......eeeeeeeee.hhhhhhhhhhh.....eeeeeee....eeeeeee....eeeeeeee....hhhhhhhhhhhhhhh....hhhhhhhhhhh..hhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhh..hhh.ee...hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5aey C   1 MLVFIDDGSTNIKLQWQESDGTIKQHISPNSFKREWAVSFGDKKVFNYTLNGEQYSFDPISPDAVVTTNIAWQYSDVNVVAVHHALLTSGLPVSEVDIVCTLPLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQELDELDSLLIIDLGGTTLDISQVMGKLSGISKIYGDSSLGVSLVTSAVKDALSLARTKGSSYLADDIIIHRKDNNYLKQRINDENKISIVTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAELICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLI 318
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310        


Chain D from PDB  Type:PROTEIN  Length:318
                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee...eeeeeeee...eeeeeeee..ee.............eee....eeee...........hhhhhhhhhhhhhhhhhhhh......eeeeeeeehhhhhh......hhhhhhhhhhhh....ee......eeeeeeeee.hhhhhhhhhhh.....eeeeeee....eeeeeee....eeeeeeee....hhhhhhhhhhhhhhh....hhhhhhhhhhh..hhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhh..hhh.ee...hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5aey D   1 MLVFIDDGSTNIKLQWQESDGTIKQHISPNSFKREWAVSFGDKKVFNYTLNGEQYSFDPISPDAVVTTNIAWQYSDVNVVAVHHALLTSGLPVSEVDIVCTLPLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQELDELDSLLIIDLGGTTLDISQVMGKLSGISKIYGDSSLGVSLVTSAVKDALSLARTKGSSYLADDIIIHRKDNNYLKQRINDENKISIVTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAELICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLI 318
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310        


Chain E from PDB  Type:PROTEIN  Length:318
                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee...eeeeeeee...eeeeeeee..ee.............eee....eeee...........hhhhhhhhhhhhhhhhhhhh......eeeeeeeehhhhhh......hhhhhhhhhhhh....ee......eeeeeeeee.hhhhhhhhhhh.....eeeeeee....eeeeeee....eeeeeeee....hhhhhhhhhhhhhhh....hhhhhhhhhhh..hhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhh..hhh.ee...hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5aey E   1 MLVFIDDGSTNIKLQWQESDGTIKQHISPNSFKREWAVSFGDKKVFNYTLNGEQYSFDPISPDAVVTTNIAWQYSDVNVVAVHHALLTSGLPVSEVDIVCTLPLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQELDELDSLLIIDLGGTTLDISQVMGKLSGISKIYGDSSLGVSLVTSAVKDALSLARTKGSSYLADDIIIHRKDNNYLKQRINDENKISIVTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAELICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLI 318
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AEY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AEY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AEY)

(-) Gene Ontology  (1, 1)

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  PARM_ECOLX | P11904
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PARM_ECOLX | P11904: 1mwk 1mwm 2qu4 2zgy 2zgz 2zhc 3iku 3iky 4a61 4a62 4a6j 5ai7

(-) Related Entries Specified in the PDB File

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