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(-) Description

Title :  CRYSTAL STRUCTURE OF AUTHENTIC PROVIDENCE VIRUS
 
Authors :  J. A. Speir, D. J. Taylor, J. E. Johnson
Date :  26 Jul 07  (Deposition) - 20 Jan 09  (Release) - 01 Jun 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.80
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,R
Biol. Unit 1:  A,B,C,D,E,F,G,H,R  (60x)
Keywords :  Virus, Capsid, Coat Protein, Protein-Rna Complex, Beta Barrel, Ig- Like Domain, Tetravirus, Tetraviridae, Icosahedral Virus, Quasiequivalence, Auto-Catalytic Cleavage, Auto Proteolysis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. A. Speir, D. J. Taylor, P. Natarajan, F. M. Pringle, L. A. Ball, J. E. Johnson
Evolution In Action: N And C Termini Of Subunits In Related T = 4 Viruses Exchange Roles As Molecular Switches.
Structure V. 18 700 2010
PubMed-ID: 20541507  |  Reference-DOI: 10.1016/J.STR.2010.03.010
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - LARGE CAPSID PROTEIN
    Chains: A, C, E, G
    Organism Scientific: PROVIDENCE VIRUS
    Organism Taxid: 213633
    Other Details: CORN EARWORM, LEPIDOPTERA, NOCTUIDAE, MG8 (MID GUT) CELL LINE
    Strain: BCIRL-HZ
 
Molecule 2 - SMALL CAPSID PROTEIN
    Chains: B, D, F, H
    Organism Scientific: PROVIDENCE VIRUS
    Organism Taxid: 213633
    Other Details: CORN EARWORM, LEPIDOPTERA, NOCTUIDAE, MG8 (MID GUT) CELL LINE
    Strain: BCIRL-HZ
 
Molecule 3 - RNA (5'-R(*UP*UP*UP*U)-3')
    Chains: R
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456789
Asymmetric Unit : ABCDEFGHR
Biological Unit 1 (60x): ABCDEFGHR

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1CA2Ligand/IonCALCIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:451 , GLU C:451 , GLU E:451BINDING SITE FOR RESIDUE CA A 557
2AC2SOFTWAREGLU G:451BINDING SITE FOR RESIDUE CA G 557

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2QQP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2QQP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2QQP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2QQP)

(-) Exons   (0, 0)

(no "Exon" information available for 2QQP)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:484
 aligned with Q80IX5_PRVFL | Q80IX5 from UniProtKB/TrEMBL  Length:754

    Alignment length:484
                                   205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625       635       645       655       665       675    
         Q80IX5_PRVFL   196 QSIDPSEGAVGWFYKYMDPAGAVESGKALGEFSKVPDGLLRYSVDAEQRPIVTIECPTVSESDLPLDGKLWRVSFISFPAFRLNFIALANINNEALTLETRNTFIQTLNNITNWRDLGTGQWAQFAPGWYYSIYVLPNTYAMAEIGDRTDSVTQFRKVYKGITFEFNAPTLIDQGWWVGAHIPVKPQSETIPAAERFSAGSMTVSASNAIFQPSNTVARIVWSITPLPVATVALTTGTGGTNNTSGKFFSVEIDGNVNSVWTFTAPASILAEGEPFAEEGDTTSFSMTTITADTVVYSVSSSLTGSSVIVRGVTKGSGVSITPVTVGIDTEAVNRLSIEMPALTTEEVTTNVPKYEQFLCKESGGAYIVHYKMNNPVFEMTGEENFGGFQFHYPGYDPENNALGLRGIVDTFENNFSSAVVHFWGISQSATIVCKTYDGWEGTTNAGSTVGQFAHTGAEEEDEVVQLANRLQMELTGVYQADDN 679
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhh.hhhhhh..................eeeee...eee.................eeeeee.....eeeeeeee......hhhhhhhhhhhhhh..hhhhhh.....eee..eeeeeeehhhhhh.........eeeeeeeeeeeeeeeee.hhhhh..eeeeeee...eeeee.......eeeeeeeeee..........eeeeeeeeeee....eeee....ee.....eeeeeeee....eeeee....eee..eeee....eeeeeeeee....eeeeee..........ee..........eeee.......eeeeee....hhhhhhhhh...eeee.....eeeeee..........ee...eeeeeee....hhhhh......eeee......eeeeee.......eeeeeeeeeeeeeeee...hhhhh......hhhhhhhhhhhhhhh..eee.hhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qqp A  73 QSIDPSEGAVGWFYKYMDPAGAVESGKALGEFSKVPDGLLRYSVDAEQRPIVTIECPTVSESDLPLDGKLWRVSFISFPAFRLNFIALANINNEALTLETRNTFIQTLNNITNWRDLGTGQWAQFAPGWYYSIYVLPNTYAMAEIGDRTDSVTQFRKVYKGITFEFNAPTLIDQGWWVGAHIPVKPQSETIPAAERFSAGSMTVSASNAIFQPSNTVARIVWSITPLPVATVALTTGTGGTNNTSGKFFSVEIDGNVNSVWTFTAPASILAEGEPFAEEGDTTSFSMTTITADTVVYSVSSSLTGSSVIVRGVTKGSGVSITPVTVGIDTEAVNRLSIEMPALTTEEVTTNVPKYEQFLCKESGGAYIVHYKMNNPVFEMTGEENFGGFQFHYPGYDPENNALGLRGIVDTFENNFSSAVVHFWGISQSATIVCKTYDGWEGTTNAGSTVGQFAHTGAEEEDEVVQLANRLQMELTGVYQADDN 556
                                    82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552    


Chain B from PDB  Type:PROTEIN  Length:39
 aligned with Q80IX5_PRVFL | Q80IX5 from UniProtKB/TrEMBL  Length:754

    Alignment length:39
                                   689       699       709         
         Q80IX5_PRVFL   680 FAGTVSALASIGLGLLGKSSATPSVIKGIAQQAVGAVQA 718
               SCOP domains --------------------------------------- SCOP domains
               CATH domains --------------------------------------- CATH domains
               Pfam domains --------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh...hhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------- PROSITE
                 Transcript --------------------------------------- Transcript
                 2qqp B 557 FAGTVSALASIGLGLLGKSSATPSVIKGIAQQAVGAVQA 595
                                   566       576       586         


Chain C from PDB  Type:PROTEIN  Length:484
 aligned with Q80IX5_PRVFL | Q80IX5 from UniProtKB/TrEMBL  Length:754

    Alignment length:484
                                   205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625       635       645       655       665       675    
         Q80IX5_PRVFL   196 QSIDPSEGAVGWFYKYMDPAGAVESGKALGEFSKVPDGLLRYSVDAEQRPIVTIECPTVSESDLPLDGKLWRVSFISFPAFRLNFIALANINNEALTLETRNTFIQTLNNITNWRDLGTGQWAQFAPGWYYSIYVLPNTYAMAEIGDRTDSVTQFRKVYKGITFEFNAPTLIDQGWWVGAHIPVKPQSETIPAAERFSAGSMTVSASNAIFQPSNTVARIVWSITPLPVATVALTTGTGGTNNTSGKFFSVEIDGNVNSVWTFTAPASILAEGEPFAEEGDTTSFSMTTITADTVVYSVSSSLTGSSVIVRGVTKGSGVSITPVTVGIDTEAVNRLSIEMPALTTEEVTTNVPKYEQFLCKESGGAYIVHYKMNNPVFEMTGEENFGGFQFHYPGYDPENNALGLRGIVDTFENNFSSAVVHFWGISQSATIVCKTYDGWEGTTNAGSTVGQFAHTGAEEEDEVVQLANRLQMELTGVYQADDN 679
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhh...hhhhhh................eeeeeee..eeee.................eeeeeeeee..eeeeeeee......hhhhhhhhhhhhhh..hhhhhh....eeee..eee.ee.hhhhhhh........ee....eee..eeeeee.hhhhh..eeeeeee....eeeee......eeeeeeeeeee........eeeeeeeeeeee...eeeee....eee....eeeeeeeee...eeeee....eee...eee....eeeeeeeee....eeeeee..........eee........eeeee......eeeeeee....hhhhhhhhh...eeee......eee.................eeeeeee....hhhhh......eeee......eeeeeee......eeeeee.eeeee.eee..hhhhh.ee....hhhhhhhhhhhhhhh..eee.hhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qqp C  73 QSIDPSEGAVGWFYKYMDPAGAVESGKALGEFSKVPDGLLRYSVDAEQRPIVTIECPTVSESDLPLDGKLWRVSFISFPAFRLNFIALANINNEALTLETRNTFIQTLNNITNWRDLGTGQWAQFAPGWYYSIYVLPNTYAMAEIGDRTDSVTQFRKVYKGITFEFNAPTLIDQGWWVGAHIPVKPQSETIPAAERFSAGSMTVSASNAIFQPSNTVARIVWSITPLPVATVALTTGTGGTNNTSGKFFSVEIDGNVNSVWTFTAPASILAEGEPFAEEGDTTSFSMTTITADTVVYSVSSSLTGSSVIVRGVTKGSGVSITPVTVGIDTEAVNRLSIEMPALTTEEVTTNVPKYEQFLCKESGGAYIVHYKMNNPVFEMTGEENFGGFQFHYPGYDPENNALGLRGIVDTFENNFSSAVVHFWGISQSATIVCKTYDGWEGTTNAGSTVGQFAHTGAEEEDEVVQLANRLQMELTGVYQADDN 556
                                    82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552    


Chain D from PDB  Type:PROTEIN  Length:40
 aligned with Q80IX5_PRVFL | Q80IX5 from UniProtKB/TrEMBL  Length:754

    Alignment length:40
                                   689       699       709       719
         Q80IX5_PRVFL   680 FAGTVSALASIGLGLLGKSSATPSVIKGIAQQAVGAVQAN 719
               SCOP domains ---------------------------------------- SCOP domains
               CATH domains ---------------------------------------- CATH domains
               Pfam domains ---------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhh....hhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------- PROSITE
                 Transcript ---------------------------------------- Transcript
                 2qqp D 557 FAGTVSALASIGLGLLGKSSATPSVIKGIAQQAVGAVQAN 596
                                   566       576       586       596


Chain E from PDB  Type:PROTEIN  Length:517
 aligned with Q80IX5_PRVFL | Q80IX5 from UniProtKB/TrEMBL  Length:754

    Alignment length:517
                                   172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       
         Q80IX5_PRVFL   163 QATILKPQLLPGESVAPSGGRGTMDPPVHEICAQSIDPSEGAVGWFYKYMDPAGAVESGKALGEFSKVPDGLLRYSVDAEQRPIVTIECPTVSESDLPLDGKLWRVSFISFPAFRLNFIALANINNEALTLETRNTFIQTLNNITNWRDLGTGQWAQFAPGWYYSIYVLPNTYAMAEIGDRTDSVTQFRKVYKGITFEFNAPTLIDQGWWVGAHIPVKPQSETIPAAERFSAGSMTVSASNAIFQPSNTVARIVWSITPLPVATVALTTGTGGTNNTSGKFFSVEIDGNVNSVWTFTAPASILAEGEPFAEEGDTTSFSMTTITADTVVYSVSSSLTGSSVIVRGVTKGSGVSITPVTVGIDTEAVNRLSIEMPALTTEEVTTNVPKYEQFLCKESGGAYIVHYKMNNPVFEMTGEENFGGFQFHYPGYDPENNALGLRGIVDTFENNFSSAVVHFWGISQSATIVCKTYDGWEGTTNAGSTVGQFAHTGAEEEDEVVQLANRLQMELTGVYQADDN 679
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......................................hhhhhhhhhhhhhhhhhhhh..................eeeee..eeee...............eeeeeeee.....eeeeeeee......hhhhhhhhhhhhhhh...........ee....eeeeeee..................eeeeeeeeeeeeee........eeeeee................eee.eeee...........ee..eeeeeeee....ee.............eeeee..ee...eeeee....eee...eee....eeeeeeeee...eeeeeee........eeeeee.........eee........eeeee.......hhhhhh...eeee.....eeeee................eeeeeee....hhhhh.......eee.......eeeeeeeee...eeeeeeeeeeeee......hhhhh......hhhhhhhhhhhhhhh..eee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qqp E  40 QATILKPQLLPGESVAPSGGRGTMDPPVHEICAQSIDPSEGAVGWFYKYMDPAGAVESGKALGEFSKVPDGLLRYSVDAEQRPIVTIECPTVSESDLPLDGKLWRVSFISFPAFRLNFIALANINNEALTLETRNTFIQTLNNITNWRDLGTGQWAQFAPGWYYSIYVLPNTYAMAEIGDRTDSVTQFRKVYKGITFEFNAPTLIDQGWWVGAHIPVKPQSETIPAAERFSAGSMTVSASNAIFQPSNTVARIVWSITPLPVATVALTTGTGGTNNTSGKFFSVEIDGNVNSVWTFTAPASILAEGEPFAEEGDTTSFSMTTITADTVVYSVSSSLTGSSVIVRGVTKGSGVSITPVTVGIDTEAVNRLSIEMPALTTEEVTTNVPKYEQFLCKESGGAYIVHYKMNNPVFEMTGEENFGGFQFHYPGYDPENNALGLRGIVDTFENNFSSAVVHFWGISQSATIVCKTYDGWEGTTNAGSTVGQFAHTGAEEEDEVVQLANRLQMELTGVYQADDN 556
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       


Chain F from PDB  Type:PROTEIN  Length:67
 aligned with Q80IX5_PRVFL | Q80IX5 from UniProtKB/TrEMBL  Length:754

    Alignment length:67
                                   689       699       709       719       729       739       
         Q80IX5_PRVFL   680 FAGTVSALASIGLGLLGKSSATPSVIKGIAQQAVGAVQANPGILEGAVKAIGSVGARLVGSIKARRA 746
               SCOP domains ------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh...............hhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                 2qqp F 557 FAGTVSALASIGLGLLGKSSATPSVIKGIAQQAVGAVQANPGILEGAVKAIGSVGARLVGSIKARRA 623
                                   566       576       586       596       606       616       


Chain G from PDB  Type:PROTEIN  Length:518
 aligned with Q80IX5_PRVFL | Q80IX5 from UniProtKB/TrEMBL  Length:754

    Alignment length:518
                                   171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671        
         Q80IX5_PRVFL   162 EQATILKPQLLPGESVAPSGGRGTMDPPVHEICAQSIDPSEGAVGWFYKYMDPAGAVESGKALGEFSKVPDGLLRYSVDAEQRPIVTIECPTVSESDLPLDGKLWRVSFISFPAFRLNFIALANINNEALTLETRNTFIQTLNNITNWRDLGTGQWAQFAPGWYYSIYVLPNTYAMAEIGDRTDSVTQFRKVYKGITFEFNAPTLIDQGWWVGAHIPVKPQSETIPAAERFSAGSMTVSASNAIFQPSNTVARIVWSITPLPVATVALTTGTGGTNNTSGKFFSVEIDGNVNSVWTFTAPASILAEGEPFAEEGDTTSFSMTTITADTVVYSVSSSLTGSSVIVRGVTKGSGVSITPVTVGIDTEAVNRLSIEMPALTTEEVTTNVPKYEQFLCKESGGAYIVHYKMNNPVFEMTGEENFGGFQFHYPGYDPENNALGLRGIVDTFENNFSSAVVHFWGISQSATIVCKTYDGWEGTTNAGSTVGQFAHTGAEEEDEVVQLANRLQMELTGVYQADDN 679
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.......................eeee.......hhhhhhhhhhhhh.hhhhhhh...............eeeeeee..ee.................eeeeeeee.....eeee..ee......hhhhhhhhhhhhhh..hhhhhh....eeee..eee.eee.....................eeeeeeeeeee........eeeeeee...eeeeee......eeeeee..eee.........eee..eeeeee............eee....eeeeee......eeeee....eee..ee......eeeeeeeee...eeeeeee.......eeeeeee.......eeeee......eeeeeee....hhhhhhhhh..eeeee.hhh.eeeee............hhh.ee..eee.................ee......eeeeeeeeee...eeeeeeeeeeee.......hhh.eee....hhhhhhhhhhhhhhh..eee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qqp G  39 EQATILKPQLLPGESVAPSGGRGTMDPPVHEICAQSIDPSEGAVGWFYKYMDPAGAVESGKALGEFSKVPDGLLRYSVDAEQRPIVTIECPTVSESDLPLDGKLWRVSFISFPAFRLNFIALANINNEALTLETRNTFIQTLNNITNWRDLGTGQWAQFAPGWYYSIYVLPNTYAMAEIGDRTDSVTQFRKVYKGITFEFNAPTLIDQGWWVGAHIPVKPQSETIPAAERFSAGSMTVSASNAIFQPSNTVARIVWSITPLPVATVALTTGTGGTNNTSGKFFSVEIDGNVNSVWTFTAPASILAEGEPFAEEGDTTSFSMTTITADTVVYSVSSSLTGSSVIVRGVTKGSGVSITPVTVGIDTEAVNRLSIEMPALTTEEVTTNVPKYEQFLCKESGGAYIVHYKMNNPVFEMTGEENFGGFQFHYPGYDPENNALGLRGIVDTFENNFSSAVVHFWGISQSATIVCKTYDGWEGTTNAGSTVGQFAHTGAEEEDEVVQLANRLQMELTGVYQADDN 556
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548        


Chain H from PDB  Type:PROTEIN  Length:38
 aligned with Q80IX5_PRVFL | Q80IX5 from UniProtKB/TrEMBL  Length:754

    Alignment length:38
                                   689       699       709        
         Q80IX5_PRVFL   680 FAGTVSALASIGLGLLGKSSATPSVIKGIAQQAVGAVQ 717
               SCOP domains -------------------------------------- SCOP domains
               CATH domains -------------------------------------- CATH domains
               Pfam domains -------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh..hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------- PROSITE
                 Transcript -------------------------------------- Transcript
                 2qqp H 557 FAGTVSALASIGLGLLGKSSATPSVIKGIAQQAVGAVQ 594
                                   566       576       586        


Chain R from PDB  Type:RNA  Length:4
                                    
                 2qqp R   1 UUUU   4
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2QQP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2QQP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2QQP)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2QQP)

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  2qqp
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  Q80IX5_PRVFL | Q80IX5
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

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