Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF A SIGNALING MOLECULE
 
Authors :  C. J. Porter, M. C. Wilce, J. A. Wilce
Date :  16 Jul 07  (Deposition) - 22 Jul 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A (1x),C (1x)
Biol. Unit 2:  B (1x),D (1x)
Biol. Unit 3:  A,B  (1x)
Biol. Unit 4:  C,D  (1x)
Keywords :  Sh2 Domain, Alpha/Beta Fold, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. J. Porter, J. M. Matthews, J. P. Mackay, S. E. Pursglove, J. W. Schmidberger, P. J. Leedman, S. C. Pero, D. N. Krag, M. C. Wilce, J. A. Wilce
Grb7 Sh2 Domain Structure And Interactions With A Cyclic Peptide Inhibitor Of Cancer Cell Migration And Proliferation.
Bmc Struct. Biol. V. 7 58 2007
PubMed-ID: 17894853  |  Reference-DOI: 10.1186/1472-6807-7-58
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GROWTH FACTOR RECEPTOR-BOUND PROTEIN 7
    ChainsA, B, C, D
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPGEX4T2
    Expression System StrainBL21(DE3).PLYSS
    Expression System Vector TypePLASMID
    FragmentSH2 DOMAIN (RESIDUES 415-532)
    GeneGRB7
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    SynonymGRB7 ADAPTER PROTEIN, EPIDERMAL GROWTH FACTOR RECEPTOR GRB-7, B47

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)A (1x) C (1x) 
Biological Unit 2 (1x) B (1x) D (1x)
Biological Unit 3 (1x)AB  
Biological Unit 4 (1x)  CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 7)

Asymmetric Unit (1, 7)
No.NameCountTypeFull Name
1SO47Ligand/IonSULFATE ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION
Biological Unit 3 (1, 4)
No.NameCountTypeFull Name
1SO44Ligand/IonSULFATE ION
Biological Unit 4 (1, 3)
No.NameCountTypeFull Name
1SO43Ligand/IonSULFATE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG D:438 , ARG D:458 , SER D:460 , GLN D:461 , ARG D:462BINDING SITE FOR RESIDUE SO4 D 301
2AC2SOFTWAREARG B:516 , CYS B:521 , LEU B:522 , ARG B:524BINDING SITE FOR RESIDUE SO4 B 302
3AC3SOFTWAREARG A:462 , ARG A:516 , CYS A:521 , LEU A:522 , ARG A:524BINDING SITE FOR RESIDUE SO4 A 303
4AC4SOFTWAREHOH A:17 , HOH A:142 , ARG A:438 , ARG A:458 , SER A:460 , GLN A:461 , ARG A:462BINDING SITE FOR RESIDUE SO4 A 305
5AC5SOFTWAREHOH C:145 , ARG C:516 , CYS C:521 , LEU C:522 , ARG C:524BINDING SITE FOR RESIDUE SO4 C 306
6AC6SOFTWAREARG B:438 , ARG B:458 , SER B:460 , GLN B:461BINDING SITE FOR RESIDUE SO4 B 307
7AC7SOFTWAREARG C:438 , ARG C:458 , SER C:460 , GLN C:461 , ARG C:462BINDING SITE FOR RESIDUE SO4 C 308

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2QMS)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2QMS)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2QMS)

(-) PROSITE Motifs  (1, 4)

Asymmetric Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SH2PS50001 Src homology 2 (SH2) domain profile.GRB7_HUMAN431-527
 
 
 
  4A:431-527
B:431-527
C:431-527
D:431-527
Biological Unit 1 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SH2PS50001 Src homology 2 (SH2) domain profile.GRB7_HUMAN431-527
 
 
 
  2A:431-527
-
C:431-527
-
Biological Unit 2 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SH2PS50001 Src homology 2 (SH2) domain profile.GRB7_HUMAN431-527
 
 
 
  2-
B:431-527
-
D:431-527
Biological Unit 3 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SH2PS50001 Src homology 2 (SH2) domain profile.GRB7_HUMAN431-527
 
 
 
  2A:431-527
B:431-527
-
-
Biological Unit 4 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SH2PS50001 Src homology 2 (SH2) domain profile.GRB7_HUMAN431-527
 
 
 
  2-
-
C:431-527
D:431-527

(-) Exons   (4, 16)

Asymmetric Unit (4, 16)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.2ENST000003942112ENSE00001517752chr17:37894576-3789464570GRB7_HUMAN-00--
1.4aENST000003942114aENSE00002183795chr17:37898505-37898709205GRB7_HUMAN1-52520--
1.5aENST000003942115aENSE00001227713chr17:37898819-37898969151GRB7_HUMAN52-102510--
1.5dENST000003942115dENSE00000950638chr17:37899151-37899307157GRB7_HUMAN103-155530--
1.6aENST000003942116aENSE00000950639chr17:37899433-37899554122GRB7_HUMAN155-195410--
1.6dENST000003942116dENSE00000950640chr17:37899646-3789972378GRB7_HUMAN196-221260--
1.7aENST000003942117aENSE00000950641chr17:37900323-37900460138GRB7_HUMAN222-267460--
1.8ENST000003942118ENSE00000950642chr17:37900806-37900916111GRB7_HUMAN268-304370--
1.9ENST000003942119ENSE00000950643chr17:37901139-3790123799GRB7_HUMAN305-337330--
1.10ENST0000039421110ENSE00000950644chr17:37901496-3790157681GRB7_HUMAN338-364270--
1.11ENST0000039421111ENSE00000950645chr17:37901675-37901791117GRB7_HUMAN365-403390--
1.12ENST0000039421112ENSE00000950646chr17:37901981-3790204161GRB7_HUMAN404-424214A:420-424
B:420-424
C:420-424
D:420-424
5
5
5
5
1.13ENST0000039421113ENSE00000950647chr17:37902166-3790225388GRB7_HUMAN424-453304A:424-453
B:424-453
C:424-453
D:424-453
30
30
30
30
1.14ENST0000039421114ENSE00001651412chr17:37902362-3790245594GRB7_HUMAN453-484324A:453-484
B:453-484
C:453-484
D:453-484
32
32
32
32
1.15cENST0000039421115cENSE00001850980chr17:37903004-37903538535GRB7_HUMAN485-532484A:485-532
B:485-532
C:485-532
D:485-532
48
48
48
48

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:113
 aligned with GRB7_HUMAN | Q14451 from UniProtKB/Swiss-Prot  Length:532

    Alignment length:113
                                   429       439       449       459       469       479       489       499       509       519       529   
           GRB7_HUMAN   420 SLSAAIHRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGRLYFSMDDGQTRFTDLLQLVEFHQLNRGILPCLLRHCCTRVAL 532
               SCOP domains d2qmsa_ A: Growth factor receptor-bound protein 7                                                                 SCOP domains
               CATH domains 2qmsA00 A:420-532 SHC Adaptor Protein                                                                             CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh......eeee.hhhhhhhhhhhh.....eeeeee.......eeeeeee..eeeeeeeeeee....eeee.........hhhhhhhhhh...........ee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------SH2  PDB: A:431-527 UniProt: 431-527                                                             ----- PROSITE
           Transcript 1 (1) 1.12 ----------------------------Exon 1.14  PDB: A:453-484       Exon 1.15c  PDB: A:485-532 UniProt: 485-532      Transcript 1 (1)
           Transcript 1 (2) ----Exon 1.13  PDB: A:424-453     ------------------------------------------------------------------------------- Transcript 1 (2)
                 2qms A 420 SLSAAIHRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGRLYFSMDDGQTRFTDLLQLVEFHQLNRGILPCLLRHCCTRVAL 532
                                   429       439       449       459       469       479       489       499       509       519       529   

Chain B from PDB  Type:PROTEIN  Length:113
 aligned with GRB7_HUMAN | Q14451 from UniProtKB/Swiss-Prot  Length:532

    Alignment length:113
                                   429       439       449       459       469       479       489       499       509       519       529   
           GRB7_HUMAN   420 SLSAAIHRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGRLYFSMDDGQTRFTDLLQLVEFHQLNRGILPCLLRHCCTRVAL 532
               SCOP domains d2qmsb_ B: Growth factor receptor-bound protein 7                                                                 SCOP domains
               CATH domains 2qmsB00 B:420-532 SHC Adaptor Protein                                                                             CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh......eeee.hhhhhhhhhhhh.....eeeeee.......eeeeeee..eeeeeeeeeeee..eeeee.........hhhhhhhhhh...........ee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------SH2  PDB: B:431-527 UniProt: 431-527                                                             ----- PROSITE
           Transcript 1 (1) 1.12 ----------------------------Exon 1.14  PDB: B:453-484       Exon 1.15c  PDB: B:485-532 UniProt: 485-532      Transcript 1 (1)
           Transcript 1 (2) ----Exon 1.13  PDB: B:424-453     ------------------------------------------------------------------------------- Transcript 1 (2)
                 2qms B 420 SLSAAIHRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGRLYFSMDDGQTRFTDLLQLVEFHQLNRGILPCLLRHCCTRVAL 532
                                   429       439       449       459       469       479       489       499       509       519       529   

Chain C from PDB  Type:PROTEIN  Length:113
 aligned with GRB7_HUMAN | Q14451 from UniProtKB/Swiss-Prot  Length:532

    Alignment length:113
                                   429       439       449       459       469       479       489       499       509       519       529   
           GRB7_HUMAN   420 SLSAAIHRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGRLYFSMDDGQTRFTDLLQLVEFHQLNRGILPCLLRHCCTRVAL 532
               SCOP domains d2qmsc_ C: Growth factor receptor-bound protein 7                                                                 SCOP domains
               CATH domains 2qmsC00 C:420-532 SHC Adaptor Protein                                                                             CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhh..........hhhhhhhhhhh......eeeeee.......eeeeeee..eeeeeeeeeeee..eeeee.........hhhhhhhhhhhh.........ee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------SH2  PDB: C:431-527 UniProt: 431-527                                                             ----- PROSITE
           Transcript 1 (1) 1.12 ----------------------------Exon 1.14  PDB: C:453-484       Exon 1.15c  PDB: C:485-532 UniProt: 485-532      Transcript 1 (1)
           Transcript 1 (2) ----Exon 1.13  PDB: C:424-453     ------------------------------------------------------------------------------- Transcript 1 (2)
                 2qms C 420 SLSAAIHRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGRLYFSMDDGQTRFTDLLQLVEFHQLNRGILPCLLRHCCTRVAL 532
                                   429       439       449       459       469       479       489       499       509       519       529   

Chain D from PDB  Type:PROTEIN  Length:113
 aligned with GRB7_HUMAN | Q14451 from UniProtKB/Swiss-Prot  Length:532

    Alignment length:113
                                   429       439       449       459       469       479       489       499       509       519       529   
           GRB7_HUMAN   420 SLSAAIHRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGRLYFSMDDGQTRFTDLLQLVEFHQLNRGILPCLLRHCCTRVAL 532
               SCOP domains d2qmsd_ D: Growth factor receptor-bound protein 7                                                                 SCOP domains
               CATH domains 2qmsD00 D:420-532 SHC Adaptor Protein                                                                             CATH domains
           Pfam domains (1) -----------SH2-2qmsD01 D:431-512                                                             -------------------- Pfam domains (1)
           Pfam domains (2) -----------SH2-2qmsD02 D:431-512                                                             -------------------- Pfam domains (2)
           Pfam domains (3) -----------SH2-2qmsD03 D:431-512                                                             -------------------- Pfam domains (3)
           Pfam domains (4) -----------SH2-2qmsD04 D:431-512                                                             -------------------- Pfam domains (4)
         Sec.struct. author hhhhhhh..........hhhhhhhhhhhh.....eeeeee.......eeeeeee..eeeeeeeeeeee..eeeee.........hhhhhhhhhhhh.........ee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------SH2  PDB: D:431-527 UniProt: 431-527                                                             ----- PROSITE
           Transcript 1 (1) 1.12 ----------------------------Exon 1.14  PDB: D:453-484       Exon 1.15c  PDB: D:485-532 UniProt: 485-532      Transcript 1 (1)
           Transcript 1 (2) ----Exon 1.13  PDB: D:424-453     ------------------------------------------------------------------------------- Transcript 1 (2)
                 2qms D 420 SLSAAIHRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGRLYFSMDDGQTRFTDLLQLVEFHQLNRGILPCLLRHCCTRVAL 532
                                   429       439       449       459       469       479       489       499       509       519       529   

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Family: SH2 (119)
1aSH2-2qmsD01D:431-512
1bSH2-2qmsD02D:431-512
1cSH2-2qmsD03D:431-512
1dSH2-2qmsD04D:431-512

(-) Gene Ontology  (23, 23)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (GRB7_HUMAN | Q14451)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0005070    SH3/SH2 adaptor activity    Interacting selectively and non-covalently and simultaneously with one or more signal transduction molecules, usually acting as a scaffold to bring these molecules into close proximity either using their own SH2/SH3 domains (e.g. Grb2) or those of their target molecules (e.g. SAM68).
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0008289    lipid binding    Interacting selectively and non-covalently with a lipid.
    GO:0035091    phosphatidylinositol binding    Interacting selectively and non-covalently with any inositol-containing glycerophospholipid, i.e. phosphatidylinositol (PtdIns) and its phosphorylated derivatives.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0019901    protein kinase binding    Interacting selectively and non-covalently with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate.
biological process
    GO:0038128    ERBB2 signaling pathway    A series of molecular signals initiated by binding of a ligand to a member of the ERBB family of receptors on the surface of a cell, where the signal is transmitted by ERBB2. The pathway ends with regulation of a downstream cellular process, e.g. transcription. ERBB2 receptors are themselves unable to bind to ligands, but act as a signal-amplifying tyrosine kinase within a heterodimeric pair.
    GO:0007173    epidermal growth factor receptor signaling pathway    A series of molecular signals initiated by binding of a ligand to the tyrosine kinase receptor EGFR (ERBB1) on the surface of a cell. The pathway ends with regulation of a downstream cellular process, e.g. transcription.
    GO:0050900    leukocyte migration    The movement of a leukocyte within or between different tissues and organs of the body.
    GO:0017148    negative regulation of translation    Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA.
    GO:0030335    positive regulation of cell migration    Any process that activates or increases the frequency, rate or extent of cell migration.
    GO:0009967    positive regulation of signal transduction    Any process that activates or increases the frequency, rate or extent of signal transduction.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0034063    stress granule assembly    The aggregation, arrangement and bonding together of proteins and RNA molecules to form a stress granule.
cellular component
    GO:0030054    cell junction    A cellular component that forms a specialized region of connection between two or more cells or between a cell and the extracellular matrix. At a cell junction, anchoring proteins extend through the plasma membrane to link cytoskeletal proteins in one cell to cytoskeletal proteins in neighboring cells or to proteins in the extracellular matrix.
    GO:0042995    cell projection    A prolongation or process extending from a cell, e.g. a flagellum or axon.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0010494    cytoplasmic stress granule    A dense aggregation in the cytosol composed of proteins and RNAs that appear when the cell is under stress.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005925    focal adhesion    Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    SO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2qms)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2qms
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  GRB7_HUMAN | Q14451
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  GRB7_HUMAN | Q14451
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GRB7_HUMAN | Q144511mw4 1wgr 2l4k 3pqz 4wwq 4x6s 5d0j 5eel 5eeq

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 2QMS)