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(-) Description

Title :  GRB7 SH2 WITH INHIBITOR PEPTIDE
 
Authors :  M. J. Gunzburg, G. M. Watson, J. A. Wilce, M. C. J. Wilce
Date :  03 Aug 15  (Deposition) - 15 Jun 16  (Release) - 15 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,B,C,D,L,M
Biol. Unit 1:  A,B,L  (1x)
Biol. Unit 2:  C,D,M  (1x)
Keywords :  Inhibitor, Sh2, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. J. Gunzburg, K. Kulkarni, G. M. Watson, N. D. Ambaye, M. P. Del Borgo R. Brandt, S. C. Pero, P. Perlmutter, M. C. Wilce, J. A. Wilce
Unexpected Involvement Of Staple Leads To Redesign Of Selective Bicyclic Peptide Inhibitor Of Grb7.
Sci Rep V. 6 27060 2016
PubMed-ID: 27257138  |  Reference-DOI: 10.1038/SREP27060

(-) Compounds

Molecule 1 - GROWTH FACTOR RECEPTOR-BOUND PROTEIN 7
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: GRB7
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: B47,EPIDERMAL GROWTH FACTOR RECEPTOR GRB-7,GRB7 ADAPTER PROTEIN
 
Molecule 2 - G7-TEDFP PEPTIDE
    Chains: L, M
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDLM
Biological Unit 1 (1x): AB  L 
Biological Unit 2 (1x):   CD M

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1PO42Ligand/IonPHOSPHATE ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1PO41Ligand/IonPHOSPHATE ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1PO41Ligand/IonPHOSPHATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:438 , ARG A:458 , SER A:460 , GLN A:461 , ARG A:462 , TYR L:5binding site for residue PO4 A 601
2AC2SOFTWAREARG D:438 , ARG D:458 , SER D:460 , GLN D:461 , ARG D:462 , TYR M:5binding site for residue PO4 D 601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5D0J)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5D0J)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5D0J)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5D0J)

(-) Exons   (0, 0)

(no "Exon" information available for 5D0J)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:106
                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhh.....eeeeee.......eeeeeee..eeeeeeeeeeee..eeeee......ee.hhhhhhhhh............ee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------- Transcript
                 5d0j A 426 HRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGRLYFSMDDGQTRFTDLLQLVEFHQLNRGILPCLLRHCCTRVA 531
                                   435       445       455       465       475       485       495       505       515       525      


Chain B from PDB  Type:PROTEIN  Length:107
                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh..eeee.hhhhhhhhhhhh.....eeeeee.......eeeeeee..eeeeeeeeee.....eee.........hhhhhhhhh............ee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 5d0j B 422 SAAIHRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEGRLYFSMDDGQTRFTDLLQLVEFHQLNRGILPCLLRHCCTR 529
                                   431       441       451       461       471       481    || 492       502       512       522       
                                                                                          486|                                         
                                                                                           488                                         


Chain C from PDB  Type:PROTEIN  Length:102
                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeee.hhhhhhhhhhhh.....eeeeee.......eeeeeee..eeeeeeeeeeee..eeeee.........hhhhhhhhh............ee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 5d0j C 429 QLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGRLYFSMDDGQTRFTDLLQLVEFHQLNRGILPCLLRHCCTRV 530
                                   438       448       458       468       478       488       498       508       518       528  


Chain D from PDB  Type:PROTEIN  Length:104
                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh.......hhhhhhhhhhhh.....eeeeee.......eeeeee....eeeeeeeeee...eeee.........hhhhhhhhhh...........ee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------- Transcript
                 5d0j D 424 AIHRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEERLYFSMDDGQTRFTDLLQLVEFHQLNRGILPCLLRHCCT 528
                                   433       443       453       463       473       483    || 494       504       514       524    
                                                                                          488|                                      
                                                                                           490                                      


Chain L from PDB  Type:PROTEIN  Length:7
                                       
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author ....... Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
                 Transcript ------- Transcript
                 5d0j L   3 EGYDNSC   9


Chain M from PDB  Type:PROTEIN  Length:8
                                        
               SCOP domains -------- SCOP domains
               CATH domains -------- CATH domains
               Pfam domains -------- Pfam domains
         Sec.struct. author ........ Sec.struct. author
                 SAPs(SNPs) -------- SAPs(SNPs)
                    PROSITE -------- PROSITE
                 Transcript -------- Transcript
                 5d0j M   1 SFEGYDNS   8
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5D0J)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5D0J)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5D0J)

(-) Gene Ontology  (23, 23)

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 Related Entries

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UniProtKB/Swiss-Prot
        GRB7_HUMAN | Q14451: 1mw4 1wgr 2l4k 2qms 3pqz 4wwq 4x6s 5eel 5eeq

(-) Related Entries Specified in the PDB File

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