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(-) Description

Title :  CRYSTAL STRUCTURE OF AD35 FIBER KNOB
 
Authors :  L. Pache, S. Venkataraman, G. R. Nemerow, V. S. Reddy
Date :  19 Dec 07  (Deposition) - 03 Jun 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,D,E,F,G
Biol. Unit 1:  A,B,D  (1x)
Biol. Unit 2:  E,F,G  (1x)
Keywords :  Viral Protein, Fiber Knob, Trimer (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Pache, S. Venkataraman, G. R. Nemerow, V. S. Reddy
Conservation Of Fiber Structure And Cd46 Usage By Subgroup B2 Adenoviruses
Virology V. 375 573 2008
PubMed-ID: 18336857  |  Reference-DOI: 10.1016/J.VIROL.2008.02.013
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - FIBER
    Chains: A, B, D, E, F, G
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Fragment: RESIDUES 121-323
    Organism Scientific: HUMAN ADENOVIRUS 35

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABDEFG
Biological Unit 1 (1x): ABD   
Biological Unit 2 (1x):    EFG

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3BQ4)

(-) Sites  (0, 0)

(no "Site" information available for 3BQ4)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3BQ4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3BQ4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3BQ4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3BQ4)

(-) Exons   (0, 0)

(no "Exon" information available for 3BQ4)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:192
 aligned with Q7T925_ADE35 | Q7T925 from UniProtKB/TrEMBL  Length:323

    Alignment length:192
                                   140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320  
         Q7T925_ADE35   131 INTLWTGINPPPNCQIVENTNTNDGKLTLVLVKNGGLVNGYVSLVGVSDTVNQMFTQKTANIQLRLYFDSSGNLLTEESDLKIPLKNKSSTATSETVASSKAFMPSTTAYPFNTTTRDSENYIHGICYYMTSYDRSLFPLNISIMLNSRMISSNVAYAIQFEWNLNASESPESNIATLTTSPFFFSYITEDD 322
               SCOP domains d3bq4a_ A: automated matches                                                                                                                                                                     SCOP domains
               CATH domains 3bq4A00 A:131-322 Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)                                                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eee...................eeeeeeeeee..eeeeeeeeee.hhhhhh.....eeeeeeeeee.................ee...........hhhhhh..................eeeeeeee......eeeeeeee............eeeeeeeeee................eeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3bq4 A 131 INTLWTGINPPPNCQIVENTNTNDGKLTLVLVKNGGLVNGYVSLVGVSDTVNQMFTQKTANIQLRLYFDSSGNLLTEESDLKIPLKNKSSTATSETVASSKAFMPSTTAYPFNTTTRDSENYIHGICYYMTSYDRSLFPLNISIMLNSRMISSNVAYAIQFEWNLNASESPESNIATLTTSPFFFSYITEDD 322
                                   140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320  


Chain B from PDB  Type:PROTEIN  Length:192
 aligned with Q7T925_ADE35 | Q7T925 from UniProtKB/TrEMBL  Length:323

    Alignment length:192
                                   140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320  
         Q7T925_ADE35   131 INTLWTGINPPPNCQIVENTNTNDGKLTLVLVKNGGLVNGYVSLVGVSDTVNQMFTQKTANIQLRLYFDSSGNLLTEESDLKIPLKNKSSTATSETVASSKAFMPSTTAYPFNTTTRDSENYIHGICYYMTSYDRSLFPLNISIMLNSRMISSNVAYAIQFEWNLNASESPESNIATLTTSPFFFSYITEDD 322
               SCOP domains d3bq4b_ B: automated matches                                                                                                                                                                     SCOP domains
               CATH domains 3bq4B00 B:131-322 Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)                                                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...ee...................eeeeeeeeee..eeeeeeeeee...hhhhhhhh.eeeeee..ee.................ee............hhhhh..................eeeeeeee......eeeeeeee............ee..eeeeee...................eee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3bq4 B 131 INTLWTGINPPPNCQIVENTNTNDGKLTLVLVKNGGLVNGYVSLVGVSDTVNQMFTQKTANIQLRLYFDSSGNLLTEESDLKIPLKNKSSTATSETVASSKAFMPSTTAYPFNTTTRDSENYIHGICYYMTSYDRSLFPLNISIMLNSRMISSNVAYAIQFEWNLNASESPESNIATLTTSPFFFSYITEDD 322
                                   140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320  


Chain D from PDB  Type:PROTEIN  Length:192
 aligned with Q7T925_ADE35 | Q7T925 from UniProtKB/TrEMBL  Length:323

    Alignment length:192
                                   140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320  
         Q7T925_ADE35   131 INTLWTGINPPPNCQIVENTNTNDGKLTLVLVKNGGLVNGYVSLVGVSDTVNQMFTQKTANIQLRLYFDSSGNLLTEESDLKIPLKNKSSTATSETVASSKAFMPSTTAYPFNTTTRDSENYIHGICYYMTSYDRSLFPLNISIMLNSRMISSNVAYAIQFEWNLNASESPESNIATLTTSPFFFSYITEDD 322
               SCOP domains d3bq4d_ D: automated matches                                                                                                                                                                     SCOP domains
               CATH domains 3bq4D00 D:131-322 Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)                                                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eee.....................eeeeeeee..eeeeeeee........hhhhh.eeeeeeeeee...............................hhhhh..................eeeeeeee......eeeeeeee............eeeeeeeeee................eeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3bq4 D 131 INTLWTGINPPPNCQIVENTNTNDGKLTLVLVKNGGLVNGYVSLVGVSDTVNQMFTQKTANIQLRLYFDSSGNLLTEESDLKIPLKNKSSTATSETVASSKAFMPSTTAYPFNTTTRDSENYIHGICYYMTSYDRSLFPLNISIMLNSRMISSNVAYAIQFEWNLNASESPESNIATLTTSPFFFSYITEDD 322
                                   140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320  


Chain E from PDB  Type:PROTEIN  Length:192
 aligned with Q7T925_ADE35 | Q7T925 from UniProtKB/TrEMBL  Length:323

    Alignment length:192
                                   140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320  
         Q7T925_ADE35   131 INTLWTGINPPPNCQIVENTNTNDGKLTLVLVKNGGLVNGYVSLVGVSDTVNQMFTQKTANIQLRLYFDSSGNLLTEESDLKIPLKNKSSTATSETVASSKAFMPSTTAYPFNTTTRDSENYIHGICYYMTSYDRSLFPLNISIMLNSRMISSNVAYAIQFEWNLNASESPESNIATLTTSPFFFSYITEDD 322
               SCOP domains d3bq4e_ E: automated matches                                                                                                                                                                     SCOP domains
               CATH domains 3bq4E00 E:131-322 Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)                                                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...ee...................eeeeeeeeee..eeeeeeeeee.hhhhhh.....eeeeeeeeee.................ee...................................eeeeeeee......eeeeeeee............eeeeeeeeee................eeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3bq4 E 131 INTLWTGINPPPNCQIVENTNTNDGKLTLVLVKNGGLVNGYVSLVGVSDTVNQMFTQKTANIQLRLYFDSSGNLLTEESDLKIPLKNKSSTATSETVASSKAFMPSTTAYPFNTTTRDSENYIHGICYYMTSYDRSLFPLNISIMLNSRMISSNVAYAIQFEWNLNASESPESNIATLTTSPFFFSYITEDD 322
                                   140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320  


Chain F from PDB  Type:PROTEIN  Length:192
 aligned with Q7T925_ADE35 | Q7T925 from UniProtKB/TrEMBL  Length:323

    Alignment length:192
                                   140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320  
         Q7T925_ADE35   131 INTLWTGINPPPNCQIVENTNTNDGKLTLVLVKNGGLVNGYVSLVGVSDTVNQMFTQKTANIQLRLYFDSSGNLLTEESDLKIPLKNKSSTATSETVASSKAFMPSTTAYPFNTTTRDSENYIHGICYYMTSYDRSLFPLNISIMLNSRMISSNVAYAIQFEWNLNASESPESNIATLTTSPFFFSYITEDD 322
               SCOP domains d3bq4f_ F: automated matches                                                                                                                                                                     SCOP domains
               CATH domains 3bq4F00 F:131-322 Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)                                                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...ee...................eeeeeeeeee..eee..eeeee...hhhhh....eeeeee..ee.................ee............hhhhh..................eeeeeeee......eeeeeeee............ee..eeeeee...................eee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3bq4 F 131 INTLWTGINPPPNCQIVENTNTNDGKLTLVLVKNGGLVNGYVSLVGVSDTVNQMFTQKTANIQLRLYFDSSGNLLTEESDLKIPLKNKSSTATSETVASSKAFMPSTTAYPFNTTTRDSENYIHGICYYMTSYDRSLFPLNISIMLNSRMISSNVAYAIQFEWNLNASESPESNIATLTTSPFFFSYITEDD 322
                                   140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320  


Chain G from PDB  Type:PROTEIN  Length:192
 aligned with Q7T925_ADE35 | Q7T925 from UniProtKB/TrEMBL  Length:323

    Alignment length:192
                                   140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320  
         Q7T925_ADE35   131 INTLWTGINPPPNCQIVENTNTNDGKLTLVLVKNGGLVNGYVSLVGVSDTVNQMFTQKTANIQLRLYFDSSGNLLTEESDLKIPLKNKSSTATSETVASSKAFMPSTTAYPFNTTTRDSENYIHGICYYMTSYDRSLFPLNISIMLNSRMISSNVAYAIQFEWNLNASESPESNIATLTTSPFFFSYITEDD 322
               SCOP domains d3bq4g_ G: automated matches                                                                                                                                                                     SCOP domains
               CATH domains 3bq4G00 G:131-322 Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)                                                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eee.....................eeeeeeee..eeeeeeee...hhhhhhhhhh..eeeeeeeee...............................hhhhh..................eeeeeeee......eeeeeeee............eeeeeeeee.................eeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3bq4 G 131 INTLWTGINPPPNCQIVENTNTNDGKLTLVLVKNGGLVNGYVSLVGVSDTVNQMFTQKTANIQLRLYFDSSGNLLTEESDLKIPLKNKSSTATSETVASSKAFMPSTTAYPFNTTTRDSENYIHGICYYMTSYDRSLFPLNISIMLNSRMISSNVAYAIQFEWNLNASESPESNIATLTTSPFFFSYITEDD 322
                                   140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 6)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3BQ4)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A,B,D,E,F,G   (Q7T925_ADE35 | Q7T925)
biological process
    GO:0007155    cell adhesion    The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
    GO:0019058    viral life cycle    A set of processes which all viruses follow to ensure survival; includes attachment and entry of the virus particle, decoding of genome information, translation of viral mRNA by host ribosomes, genome replication, and assembly and release of viral particles containing the genome.
    GO:0019062    virion attachment to host cell    The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.

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  3bq4
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q7T925_ADE35 | Q7T925: 2qlk

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