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(-) Description

Title :  STRUCTURE OF LYP WITH INHIBITOR I-C11
 
Authors :  X. Yu, J. P. Sun, Z. Y. Zhang
Date :  19 Jun 07  (Deposition) - 20 Nov 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Ptpn22, Lyp, Ptp, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  X. Yu, J. P. Sun, Y. T. He, B. Zhou, S. J. Liu, Z. Y. Zhang
Crystal Structure Of Lyp And Its Complex With A Selective Inhibitor
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 22
    ChainsA, B
    EC Number3.1.3.48
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21
    Expression System PlasmidPET28A
    Expression System StrainBL21
    Expression System Taxid511693
    Expression System Vector TypePLASMID
    FragmentCATALYTIC DOMAIN
    GenePTPN22, PTPN8
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymHEMATOPOIETIC CELL PROTEIN-TYROSINE PHOSPHATASE 70Z-PEP, LYMPHOID PHOSPHATASE, LYP

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (1x)A 
Biological Unit 2 (1x) B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric Unit (2, 3)
No.NameCountTypeFull Name
15611Ligand/Ion6-HYDROXY-3-{(4R)-1-[4-(1-NAPHTHYLAMINO)-4-OXOBUTYL]-1,2,3-TRIAZOLIDIN-4-YL}-1-BENZOFURAN-5-CARBOXYLIC ACID
2EDO2Ligand/Ion1,2-ETHANEDIOL
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
15611Ligand/Ion6-HYDROXY-3-{(4R)-1-[4-(1-NAPHTHYLAMINO)-4-OXOBUTYL]-1,2,3-TRIAZOLIDIN-4-YL}-1-BENZOFURAN-5-CARBOXYLIC ACID
2EDO1Ligand/Ion1,2-ETHANEDIOL
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1561-1Ligand/Ion6-HYDROXY-3-{(4R)-1-[4-(1-NAPHTHYLAMINO)-4-OXOBUTYL]-1,2,3-TRIAZOLIDIN-4-YL}-1-BENZOFURAN-5-CARBOXYLIC ACID
2EDO1Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:32 , GLU A:133 , LYS A:138 , SER A:228 , ALA A:229 , GLN A:274BINDING SITE FOR RESIDUE 561 A 295

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2QCT)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2QCT)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (3, 6)

Asymmetric Unit (3, 6)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_072629S201FPTN22_HUMANPolymorphism7416347A/BS201F
2UniProtVAR_072630R263QPTN22_HUMANPolymorphism33996649A/BR263Q
3UniProtVAR_072631R266WPTN22_HUMANPolymorphism72650670A/BR266W

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (3, 3)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_072629S201FPTN22_HUMANPolymorphism7416347AS201F
2UniProtVAR_072630R263QPTN22_HUMANPolymorphism33996649AR263Q
3UniProtVAR_072631R266WPTN22_HUMANPolymorphism72650670AR266W

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (3, 3)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_072629S201FPTN22_HUMANPolymorphism7416347BS201F
2UniProtVAR_072630R263QPTN22_HUMANPolymorphism33996649BR263Q
3UniProtVAR_072631R266WPTN22_HUMANPolymorphism72650670BR266W

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (3, 6)

Asymmetric Unit (3, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TYR_PHOSPHATASE_PTPPS50055 PTP type protein phosphatase family profile.PTN22_HUMAN24-289
 
  2A:24-289
B:24-289
2TYR_PHOSPHATASE_2PS50056 Tyrosine specific protein phosphatases family profile.PTN22_HUMAN203-280
 
  2A:203-280
B:203-280
3TYR_PHOSPHATASE_1PS00383 Tyrosine specific protein phosphatases active site.PTN22_HUMAN225-235
 
  2A:225-235
B:225-235
Biological Unit 1 (3, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TYR_PHOSPHATASE_PTPPS50055 PTP type protein phosphatase family profile.PTN22_HUMAN24-289
 
  1A:24-289
-
2TYR_PHOSPHATASE_2PS50056 Tyrosine specific protein phosphatases family profile.PTN22_HUMAN203-280
 
  1A:203-280
-
3TYR_PHOSPHATASE_1PS00383 Tyrosine specific protein phosphatases active site.PTN22_HUMAN225-235
 
  1A:225-235
-
Biological Unit 2 (3, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TYR_PHOSPHATASE_PTPPS50055 PTP type protein phosphatase family profile.PTN22_HUMAN24-289
 
  1-
B:24-289
2TYR_PHOSPHATASE_2PS50056 Tyrosine specific protein phosphatases family profile.PTN22_HUMAN203-280
 
  1-
B:203-280
3TYR_PHOSPHATASE_1PS00383 Tyrosine specific protein phosphatases active site.PTN22_HUMAN225-235
 
  1-
B:225-235

(-) Exons   (11, 22)

Asymmetric Unit (11, 22)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000003597851aENSE00001903805chr1:114414381-114414159223PTN22_HUMAN1-29292A:3-29 (gaps)
B:2-29 (gaps)
27
28
1.3ENST000003597853ENSE00002095549chr1:114402082-114401974109PTN22_HUMAN30-66372A:30-66
B:30-66 (gaps)
37
37
1.4bENST000003597854bENSE00002138335chr1:114401700-11440162477PTN22_HUMAN66-91262A:66-91
B:66-91
26
26
1.5ENST000003597855ENSE00002111906chr1:114401195-11440110096PTN22_HUMAN92-123322A:92-123
B:92-123
32
32
1.6ENST000003597856ENSE00002119544chr1:114400398-11440036039PTN22_HUMAN124-136132A:124-136
B:124-136
13
13
1.8ENST000003597858ENSE00002111803chr1:114399241-11439917072PTN22_HUMAN137-160242A:137-160
B:137-160
24
24
1.9ENST000003597859ENSE00002112169chr1:114399063-11439900460PTN22_HUMAN161-180202A:161-180
B:161-180
20
20
1.10ENST0000035978510ENSE00002094492chr1:114397671-114397529143PTN22_HUMAN181-228482A:181-228
B:181-228
48
48
1.11ENST0000035978511ENSE00002090732chr1:114397159-11439709367PTN22_HUMAN228-250232A:228-250
B:228-250
23
23
1.12ENST0000035978512ENSE00002116075chr1:114394726-11439464978PTN22_HUMAN251-276262A:251-276
B:251-276
26
26
1.13ENST0000035978513ENSE00002137845chr1:114391248-11439116287PTN22_HUMAN277-305292A:277-294
B:277-294
18
18
1.14ENST0000035978514ENSE00002130300chr1:114381242-11438116677PTN22_HUMAN306-331260--
1.15ENST0000035978515ENSE00002120084chr1:114381029-114380212818PTN22_HUMAN331-6042740--
1.16ENST0000035978516ENSE00002111199chr1:114377615-11437753284PTN22_HUMAN604-632290--
1.17ENST0000035978517ENSE00002137375chr1:114377061-114376931131PTN22_HUMAN632-675440--
1.18aENST0000035978518aENSE00000913528chr1:114375760-11437573328PTN22_HUMAN676-685100--
1.19ENST0000035978519ENSE00000913529chr1:114372651-11437257181PTN22_HUMAN685-712280--
1.20ENST0000035978520ENSE00000913530chr1:114372329-114372214116PTN22_HUMAN712-750390--
1.21ENST0000035978521ENSE00001020762chr1:114367794-11436776431PTN22_HUMAN751-761110--
1.22bENST0000035978522bENSE00001771523chr1:114362276-11436219978PTN22_HUMAN761-787270--
1.23dENST0000035978523dENSE00001950193chr1:114357591-1143564331159PTN22_HUMAN787-807210--

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:282
 aligned with PTN22_HUMAN | Q9Y2R2 from UniProtKB/Swiss-Prot  Length:807

    Alignment length:292
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292  
          PTN22_HUMAN     3 QREILQKFLDEAQSKKITKEEFANEFLKLKRQSTKYKADKTYPTTVAEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSYINANFIKGVYGPKAYIATQGPLSTTLLDFWRMIWEYSVLIIVMACMEYEMGKKKCERYWAEPGEMQLEFGPFSVSCEAEKRKSDYIIRTLKVKFNSETRTIYQFHYKNWPDHDVPSSIDPILELIWDVRCYQEDDSVPICIHCSAGCGRTGVICAIDYTWMLLKDGIIPENFSVFSLIREMRTQRPSLVQTQEQYELVYNAVLELFKRQM 294
               SCOP domains d2qcta_ A:           automated matches                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........----------hhhhhhhhhhh..hhhhhh.........hhhhh...............................eeee........eeee......hhhhhhhhhhhh...eeee.......................eee..eeeeeeeeee....eeeeeeee....eeeeeeee............hhhhhhhhhhhhhhh......eeee....hhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------F-------------------------------------------------------------Q--W---------------------------- SAPs(SNPs)
                PROSITE (1) ---------------------TYR_PHOSPHATASE_PTP  PDB: A:24-289 UniProt: 24-289                                                                                                                                                                                                                        ----- PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TYR_PHOSPHATASE_2  PDB: A:203-280 UniProt: 203-280                            -------------- PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TYR_PHOSPHA----------------------------------------------------------- PROSITE (3)
           Transcript 1 (1) Exon 1.1a UniProt: 1-29    Exon 1.3  PDB: A:30-66 UniProt: 30-66-------------------------Exon 1.5  PDB: A:92-123         Exon 1.6     Exon 1.8  PDB: A:137-160Exon 1.9            Exon 1.10  PDB: A:181-228 UniProt: 181-228      ----------------------Exon 1.12  PDB: A:251-276 Exon 1.13          Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------Exon 1.4b  PDB: A:66-91   ----------------------------------------------------------------------------------------------------------------------------------------Exon 1.11              -------------------------------------------- Transcript 1 (2)
                 2qct A   3 QREILQKFLD----------EFANEFLKLKRQSTKYKADKTYPTTVAEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSYINANFIKGVYGPKAYIATQGPLSTTLLDFWRMIWEYSVLIIVMACMEYEMGKKKCERYWAEPGEMQLEFGPFSVSCEAEKRKSDYIIRTLKVKFNSETRTIYQFHYKNWPDHDVPSSIDPILELIWDVRCYQEDDSVPICIHCSAGCGRTGVICAIDYTWMLLKDGIIPENFSVFSLIREMRTQRPSLVQTQEQYELVYNAVLELFKRQM 294
                                    12         -|       32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292  
                                    12         23                                                                                                                                                                                                                                                                               

Chain B from PDB  Type:PROTEIN  Length:285
 aligned with PTN22_HUMAN | Q9Y2R2 from UniProtKB/Swiss-Prot  Length:807

    Alignment length:293
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291   
          PTN22_HUMAN     2 DQREILQKFLDEAQSKKITKEEFANEFLKLKRQSTKYKADKTYPTTVAEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSYINANFIKGVYGPKAYIATQGPLSTTLLDFWRMIWEYSVLIIVMACMEYEMGKKKCERYWAEPGEMQLEFGPFSVSCEAEKRKSDYIIRTLKVKFNSETRTIYQFHYKNWPDHDVPSSIDPILELIWDVRCYQEDDSVPICIHCSAGCGRTGVICAIDYTWMLLKDGIIPENFSVFSLIREMRTQRPSLVQTQEQYELVYNAVLELFKRQM 294
               SCOP domains d2qctb_ B: autom   ated matches                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----------------------------------------------------Y_phosphatase-2qctB01 B:54-288                                                                                                                                                                                                             ------ Pfam domains (1)
           Pfam domains (2) ----------------------------------------------------Y_phosphatase-2qctB02 B:54-288                                                                                                                                                                                                             ------ Pfam domains (2)
         Sec.struct. author ................---.hhhhhhhhhhh..-----......hhhhhhhhhhhhh............................eeee........eeee......hhhhhhhhhhhhh..eeee....ee..ee.............eee..eeeeeeeeee....eeeeeeeee..eeeeeeeee.............hhhhhhhhhhhhhh......eeee....hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------F-------------------------------------------------------------Q--W---------------------------- SAPs(SNPs)
                PROSITE (1) ----------------------TYR_PHOSPHATASE_PTP  PDB: B:24-289 UniProt: 24-289                                                                                                                                                                                                                        ----- PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TYR_PHOSPHATASE_2  PDB: B:203-280 UniProt: 203-280                            -------------- PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TYR_PHOSPHA----------------------------------------------------------- PROSITE (3)
           Transcript 1 (1) Exon 1.1a  PDB: B:2-29 (gapsExon 1.3  PDB: B:30-66 (gaps)        -------------------------Exon 1.5  PDB: B:92-123         Exon 1.6     Exon 1.8  PDB: B:137-160Exon 1.9            Exon 1.10  PDB: B:181-228 UniProt: 181-228      ----------------------Exon 1.12  PDB: B:251-276 Exon 1.13          Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------Exon 1.4b  PDB: B:66-91   ----------------------------------------------------------------------------------------------------------------------------------------Exon 1.11              -------------------------------------------- Transcript 1 (2)
                 2qct B   2 DQREILQKFLDEAQSK---KEEFANEFLKLKRQ-----ADKTYPTTVAEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSYINANFIKGVYGPKAYIATQGPLSTTLLDFWRMIWEYSVLIIVMACMEYEMGKKKCERYWAEPGEMQLEFGPFSVSCEAEKRKSDYIIRTLKVKFNSETRTIYQFHYKNWPDHDVPSSIDPILELIWDVRCYQEDDSVPICIHCSAGCGRTGVICAIDYTWMLLKDGIIPENFSVFSLIREMRTQRPSLVQTQEQYELVYNAVLELFKRQM 294
                                    11     |  21        31  |     41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291   
                                          17  21           34    40                                                                                                                                                                                                                                                              

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2QCT)

(-) Pfam Domains  (1, 2)

Asymmetric Unit

(-) Gene Ontology  (44, 44)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (PTN22_HUMAN | Q9Y2R2)
molecular function
    GO:0017124    SH3 domain binding    Interacting selectively and non-covalently with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0019900    kinase binding    Interacting selectively and non-covalently with a kinase, any enzyme that catalyzes the transfer of a phosphate group.
    GO:0016791    phosphatase activity    Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate.
    GO:0004721    phosphoprotein phosphatase activity    Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004725    protein tyrosine phosphatase activity    Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate.
    GO:0031625    ubiquitin protein ligase binding    Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins.
biological process
    GO:0030217    T cell differentiation    The process in which a precursor cell type acquires characteristics of a more mature T-cell. A T cell is a type of lymphocyte whose definin characteristic is the expression of a T cell receptor complex.
    GO:0006914    autophagy    The process in which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation.
    GO:0071225    cellular response to muramyl dipeptide    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a muramyl dipeptide stimulus. Muramyl dipeptide is derived from peptidoglycan.
    GO:0016311    dephosphorylation    The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.
    GO:0002376    immune system process    Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
    GO:0031663    lipopolysaccharide-mediated signaling pathway    A series of molecular signals initiated by the binding of a lipopolysaccharide (LPS) to a receptor on the surface of a target cell, and ending with regulation of a downstream cellular process, e.g. transcription. Lipopolysaccharides are major components of the outer membrane of Gram-negative bacteria, making them prime targets for recognition by the immune system.
    GO:0043508    negative regulation of JUN kinase activity    Any process that stops, prevents, or reduces the frequency, rate or extent of JUN kinase activity.
    GO:0050868    negative regulation of T cell activation    Any process that stops, prevents, or reduces the frequency, rate or extent of T cell activation.
    GO:0050860    negative regulation of T cell receptor signaling pathway    Any process that stops, prevents, or reduces the frequency, rate or extent of signaling pathways initiated by the cross-linking of an antigen receptor on a T cell.
    GO:0010507    negative regulation of autophagy    Any process that stops, prevents, or reduces the frequency, rate or extent of autophagy. Autophagy is the process in which cells digest parts of their own cytoplasm.
    GO:0010629    negative regulation of gene expression    Any process that decreases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
    GO:1900165    negative regulation of interleukin-6 secretion    Any process that stops, prevents or reduces the frequency, rate or extent of interleukin-6 secretion.
    GO:2000483    negative regulation of interleukin-8 secretion    Any process that stops, prevents or reduces the frequency, rate or extent of interleukin-8 secretion.
    GO:0070433    negative regulation of nucleotide-binding oligomerization domain containing 2 signaling pathway    Any process that stops, prevents, or reduces the frequency, rate, or extent of the nucleotide-binding oligomerization domain containing 2 (NOD2) pathway.
    GO:1903753    negative regulation of p38MAPK cascade    Any process that stops, prevents or reduces the frequency, rate or extent of p38MAPK cascade.
    GO:0032720    negative regulation of tumor necrosis factor production    Any process that stops, prevents, or reduces the frequency, rate, or extent of tumor necrosis factor production.
    GO:0035335    peptidyl-tyrosine dephosphorylation    The removal of phosphoric residues from peptidyl-O-phospho-tyrosine to form peptidyl-tyrosine.
    GO:0035644    phosphoanandamide dephosphorylation    The process of removing one or more phosphate groups from a phosphorylated anandamide.
    GO:0070374    positive regulation of ERK1 and ERK2 cascade    Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the ERK1 and ERK2 cascade.
    GO:0010628    positive regulation of gene expression    Any process that increases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
    GO:1902715    positive regulation of interferon-gamma secretion    Any process that activates or increases the frequency, rate or extent of interferon-gamma secretion.
    GO:1902523    positive regulation of protein K63-linked ubiquitination    Any process that activates or increases the frequency, rate or extent of protein K63-linked ubiquitination.
    GO:0034141    positive regulation of toll-like receptor 3 signaling pathway    Any process that activates or increases the frequency, rate, or extent of toll-like receptor 3 signaling pathway.
    GO:0034145    positive regulation of toll-like receptor 4 signaling pathway    Any process that activates or increases the frequency, rate, or extent of toll-like receptor 4 signaling pathway.
    GO:0032481    positive regulation of type I interferon production    Any process that activates or increases the frequency, rate, or extent of type I interferon production. Type I interferons include the interferon-alpha, beta, delta, episilon, zeta, kappa, tau, and omega gene families.
    GO:0006470    protein dephosphorylation    The process of removing one or more phosphoric residues from a protein.
    GO:0050855    regulation of B cell receptor signaling pathway    Any process that modulates the frequency, rate or extent of signaling pathways initiated by the cross-linking of an antigen receptor on a B cell.
    GO:1901222    regulation of NIK/NF-kappaB signaling    Any process that modulates the frequency, rate or extent of NIK/NF-kappaB signaling.
    GO:0050856    regulation of T cell receptor signaling pathway    Any process that modulates the frequency, rate or extent of signaling pathways initiated by the cross-linking of an antigen receptor on a T cell.
    GO:0045088    regulation of innate immune response    Any process that modulates the frequency, rate or extent of the innate immune response, the organism's first line of defense against infection.
    GO:0032817    regulation of natural killer cell proliferation    Any process that modulates the frequency, rate or extent of natural killer cell proliferation.
    GO:0032496    response to lipopolysaccharide    Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0009898    cytoplasmic side of plasma membrane    The leaflet the plasma membrane that faces the cytoplasm and any proteins embedded or anchored in it or attached to its surface.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0048471    perinuclear region of cytoplasm    Cytoplasm situated near, or occurring around, the nucleus.

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        PTN22_HUMAN | Q9Y2R22p6x 2qcj 3brh 3h2x 3olr 3omh 4j51

(-) Related Entries Specified in the PDB File

2qcj NATIVE LYP CRYSTAL STRUCTURE