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(-) Description

Title :  CYRSTAL STRUCTURE OF PROTEIN TYROSINE PHOSPHATASE LYP CATALYTIC DOMAIN COMPLEX WITH SMALL MOLECULAR INHIBITOR L75N04
 
Authors :  D. Liu, Y. He, Z. -Y. Zhang
Date :  07 Feb 13  (Deposition) - 24 Jul 13  (Release) - 24 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Hydrolase, Tyrosine Phosphatase, Inhibitor Design, Hydrolase- Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. He, S. Liu, A. Menon, S. Stanford, E. Oppong, A. M. Gunawan, L. Wu, D. J. Wu, A. M. Barrios, N. Bottini, A. C. Cato, Z. Y. Zhang
A Potent And Selective Small-Molecule Inhibitor For The Lymphoid-Specific Tyrosine Phosphatase (Lyp), A Target Associated With Autoimmune Diseases.
J. Med. Chem. V. 56 4990 2013
PubMed-ID: 23713581  |  Reference-DOI: 10.1021/JM400248C

(-) Compounds

Molecule 1 - TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 22
    Chains: A, B
    EC Number: 3.1.3.48
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETDE3
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PTPN22, PTPN8
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: HEMATOPOIETIC CELL PROTEIN-TYROSINE PHOSPHATASE 70Z-PEP, LYMPHOID PHOSPHATASE, LYP, PEST-DOMAIN PHOSPHATASE, PEP

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1N752Ligand/Ion3-[(3-CHLOROPHENYL)ETHYNYL]-2-{4-[2-(CYCLOPROPYLAMINO)-2-OXOETHOXY]PHENYL}-6-HYDROXY-1-BENZOFURAN-5-CARBOXYLIC ACID
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1N751Ligand/Ion3-[(3-CHLOROPHENYL)ETHYNYL]-2-{4-[2-(CYCLOPROPYLAMINO)-2-OXOETHOXY]PHENYL}-6-HYDROXY-1-BENZOFURAN-5-CARBOXYLIC ACID
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1N751Ligand/Ion3-[(3-CHLOROPHENYL)ETHYNYL]-2-{4-[2-(CYCLOPROPYLAMINO)-2-OXOETHOXY]PHENYL}-6-HYDROXY-1-BENZOFURAN-5-CARBOXYLIC ACID

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:60 , LYS A:61 , ASP A:62 , CYS A:227 , SER A:228 , ALA A:229 , CYS A:231 , GLY A:232 , ARG A:233 , GLN A:274 , GLN A:278BINDING SITE FOR RESIDUE N75 A 401
2AC2SOFTWARETYR B:60 , LYS B:61 , ASP B:62 , CYS B:227 , SER B:228 , ALA B:229 , CYS B:231 , GLY B:232 , ARG B:233 , GLN B:274 , THR B:275 , GLN B:278 , HOH B:519BINDING SITE FOR RESIDUE N75 B 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4J51)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4J51)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4J51)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4J51)

(-) Exons   (0, 0)

(no "Exon" information available for 4J51)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:302
                                                                                                                                                                                                                                                                                                                                              
               SCOP domains d4j51a_ A: automated matches                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh.............eee..........eeeeeee........eeee...hhhhhhhhhhhhhhh...eeee....ee..ee.............eee..eeeeeeeeee...eeeeeeeeee..eeeeeeeeee.......hhhhhhhhhhhhhhhhhhh......eeee.....hhhhhhhhhhhhhhhhhh.......hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j51 A   1 MDQREILQKFLDEAQSKKITKEEFANEFLKLKRQSTKYKADKTYPTTVAEKPKNIKKNRYKDILPYDYSRVELSLITDEDSSYINANFIKGVYGPKAYIATQGPLSTTLLDFWRMIWEYSVLIIVMACMEYEMGKKKCERYWAEPGEMQLEFGPFSVSCEAEKRKSDYIIRTLKVKFNSETRTIYQFHYKNWPDHDVPSSIDPILELIWDVRCYQEDDSVPICIHCSAGCGRTGVICAIDYTWMLLKDGIIPENFSVFSLIREMRTQRPSLVQTQEQYELVYNAVLELFKRQMDVIRDKHSG 303
                                    10        20        30        40        50        60        70      ||81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301  
                                                                                                       77|                                                                                                                                                                                                                                
                                                                                                        79                                                                                                                                                                                                                                


Chain B from PDB  Type:PROTEIN  Length:302
                                                                                                                                                                                                                                                                                                                                              
               SCOP domains d4j51b_ B: automated matches                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhh.........hhhhh...............eeee........eeee......hhhhhhhhhhhh...eeee....ee..ee.............eee..eeeeeeeeee...eeeeeeeeee..eeeeeeeeee.......hhhhhhhhhhhhhhhhhhh......eeee.....hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j51 B   1 MDQREILQKFLDEAQSKKITKEEFANEFLKLKRQSTKYKADKTYPTTVAEKPKNIKKNRYKDILPYDYSRVELSLITDEDSSYINANFIKGVYGPKAYIATQGPLSTTLLDFWRMIWEYSVLIIVMACMEYEMGKKKCERYWAEPGEMQLEFGPFSVSCEAEKRKSDYIIRTLKVKFNSETRTIYQFHYKNWPDHDVPSSIDPILELIWDVRCYQEDDSVPICIHCSAGCGRTGVICAIDYTWMLLKDGIIPENFSVFSLIREMRTQRPSLVQTQEQYELVYNAVLELFKRQMDVIRDKHSG 303
                                    10        20        30        40        50        60        70      ||81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301  
                                                                                                       77|                                                                                                                                                                                                                                
                                                                                                        79
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4J51)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4J51)

(-) Gene Ontology  (44, 44)

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        PTN22_HUMAN | Q9Y2R2: 2p6x 2qcj 2qct 3brh 3h2x 3olr 3omh

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