Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit - manually
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit - manually
Asym./Biol. Unit - manually  (Jmol Viewer)
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF BOVINE LACTOPEROXIDASE AT 2.34 A RESOLUTION REVEALS MULTIPLE ANION BINDING SITES
 
Authors :  A. K. Singh, N. Singh, S. Sharma, P. Kaur, C. Betzel, T. P. Singh
Date :  08 May 07  (Deposition) - 22 May 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.34
Chains :  Asym./Biol. Unit :  A
Keywords :  Heme, Anion Binding Sites, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. K. Singh, N. Singh, S. Sharma, M. Perbandt, P. Kaur, C. Betzel, A. Srinivasan, T. P. Singh
Crystal Structure Of Bovine Lactoperoxidase At 2. 34 A Resolution Reveals Multiple Anion Binding Sites
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - LACTOPEROXIDASE
    Chains: A
    EC Number: 1.11.1.7
    Fragment: LACTOPEROXIDASE
    Organism Common: CATTLE
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Synonym: LPO

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 29)

Asymmetric/Biological Unit (6, 29)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION
2HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
3MAN2Ligand/IonALPHA-D-MANNOSE
4NAG8Ligand/IonN-ACETYL-D-GLUCOSAMINE
5PO416Ligand/IonPHOSPHATE ION
6SEP1Mod. Amino AcidPHOSPHOSERINE

(-) Sites  (28, 28)

Asymmetric Unit (28, 28)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:95 , ARG A:96 , ILE A:315 , ARG A:504 , NAG A:597 , PO4 A:610 , HOH A:757BINDING SITE FOR RESIDUE NAG A 596
02AC2SOFTWAREARG A:504 , NAG A:596 , MAN A:598 , HOH A:796BINDING SITE FOR RESIDUE NAG A 597
03AC3SOFTWARENAG A:597BINDING SITE FOR RESIDUE MAN A 598
04AC4SOFTWAREASN A:205 , SER A:208 , ALA A:214 , VAL A:215 , GLN A:217 , NAG A:600 , HOH A:836BINDING SITE FOR RESIDUE NAG A 599
05AC5SOFTWAREGLN A:217 , NAG A:599BINDING SITE FOR RESIDUE NAG A 600
06AC6SOFTWAREASN A:241 , ALA A:244 , TRP A:384 , LYS A:388 , NAG A:602BINDING SITE FOR RESIDUE NAG A 601
07AC7SOFTWARENAG A:601 , MAN A:603 , HOH A:624 , HOH A:639BINDING SITE FOR RESIDUE NAG A 602
08AC8SOFTWARENAG A:602 , HOH A:663BINDING SITE FOR RESIDUE MAN A 603
09AC9SOFTWAREASN A:332 , NAG A:605 , HOH A:703 , HOH A:793BINDING SITE FOR RESIDUE NAG A 604
10BC1SOFTWARENAG A:604BINDING SITE FOR RESIDUE NAG A 605
11BC2SOFTWAREASP A:110 , THR A:184 , PHE A:186 , ASP A:188 , SER A:190BINDING SITE FOR RESIDUE CA A 606
12BC3SOFTWAREHIS A:109 , ARG A:255 , GLU A:258 , HEM A:623 , HOH A:696 , HOH A:748 , HOH A:804BINDING SITE FOR RESIDUE PO4 A 607
13BC4SOFTWAREALA A:44 , ARG A:45 , TRP A:46 , LEU A:47 , ASN A:341 , VAL A:342 , MET A:446 , TRP A:452BINDING SITE FOR RESIDUE PO4 A 608
14BC5SOFTWAREGLU A:77 , ASN A:80 , LYS A:81 , PRO A:145 , ASN A:147BINDING SITE FOR RESIDUE PO4 A 609
15BC6SOFTWAREASN A:95 , ARG A:96 , ARG A:504 , ARG A:506 , NAG A:596BINDING SITE FOR RESIDUE PO4 A 610
16BC7SOFTWARELEU A:199 , ARG A:202BINDING SITE FOR RESIDUE PO4 A 611
17BC8SOFTWAREASN A:216 , GLN A:217 , GLU A:218 , PRO A:228 , PHE A:229BINDING SITE FOR RESIDUE PO4 A 612
18BC9SOFTWAREGLY A:223 , LEU A:224 , ALA A:225 , ARG A:271 , ARG A:278BINDING SITE FOR RESIDUE PO4 A 613
19CC1SOFTWAREPRO A:234 , SER A:235 , PRO A:236 , PHE A:239 , PHE A:422 , PRO A:424 , THR A:425BINDING SITE FOR RESIDUE PO4 A 614
20CC2SOFTWAREILE A:306 , PHE A:309 , ARG A:310 , TRP A:529 , TRP A:530 , GLU A:531 , HOH A:800 , HOH A:861BINDING SITE FOR RESIDUE PO4 A 615
21CC3SOFTWARESER A:359 , LEU A:361 , PRO A:367 , ALA A:372 , GLU A:373 , LYS A:402 , HOH A:719BINDING SITE FOR RESIDUE PO4 A 616
22CC4SOFTWAREHIS A:377 , HIS A:429BINDING SITE FOR RESIDUE PO4 A 617
23CC5SOFTWAREGLU A:363 , TYR A:365 , ARG A:397 , HIS A:558 , ILE A:559 , THR A:560 , LYS A:561 , HOH A:638BINDING SITE FOR RESIDUE PO4 A 618
24CC6SOFTWAREPRO A:11 , PRO A:461 , LYS A:462 , THR A:463 , GLY A:466 , HOH A:832BINDING SITE FOR RESIDUE PO4 A 619
25CC7SOFTWAREARG A:551 , CYS A:579 , SER A:580 , LYS A:584 , HOH A:760BINDING SITE FOR RESIDUE PO4 A 620
26CC8SOFTWAREASP A:311 , HIS A:565 , ALA A:566 , PHE A:567BINDING SITE FOR RESIDUE PO4 A 621
27CC9SOFTWAREARG A:593BINDING SITE FOR RESIDUE PO4 A 622
28DC1SOFTWAREMET A:101 , GLY A:104 , GLN A:105 , ASP A:108 , ASP A:112 , PHE A:113 , ALA A:114 , ARG A:255 , GLU A:258 , THR A:344 , PHE A:347 , ARG A:348 , GLY A:350 , HIS A:351 , VAL A:354 , LEU A:417 , ILE A:436 , ARG A:440 , PO4 A:607 , HOH A:748BINDING SITE FOR RESIDUE HEM A 623

(-) SS Bonds  (7, 7)

Asymmetric/Biological Unit
No.Residues
1A:6 -A:167
2A:15 -A:28
3A:129 -A:139
4A:133 -A:157
5A:237 -A:248
6A:456 -A:513
7A:554 -A:579

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Tyr A:572 -Pro A:573

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2PT3)

(-) PROSITE Motifs  (1, 1)

Asymmetric/Biological Unit (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PEROXIDASE_3PS50292 Animal heme peroxidase superfamily profile.PERL_BOVIN129-711  1A:12-594

(-) Exons   (9, 9)

Asymmetric/Biological Unit (9, 9)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENSBTAT000000169861ENSBTAE00000279445chr19:8430632-8430751120PERL_BOVIN-00--
1.2ENSBTAT000000169862ENSBTAE00000137885chr19:8435757-843583478PERL_BOVIN1-26260--
1.3ENSBTAT000000169863ENSBTAE00000137889chr19:8437178-843726588PERL_BOVIN26-55300--
1.4ENSBTAT000000169864ENSBTAE00000137892chr19:8441906-8442066161PERL_BOVIN55-109550--
1.5ENSBTAT000000169865ENSBTAE00000137896chr19:8443636-8443753118PERL_BOVIN109-148401A:1-3131
1.6ENSBTAT000000169866ENSBTAE00000137903chr19:8444165-8444294130PERL_BOVIN148-191441A:31-7444
1.7ENSBTAT000000169867ENSBTAE00000137906chr19:8445032-8445238207PERL_BOVIN192-260691A:75-14369
1.8ENSBTAT000000169868ENSBTAE00000137912chr19:8446677-8447001325PERL_BOVIN261-3691091A:144-252109
1.9ENSBTAT000000169869ENSBTAE00000137915chr19:8448604-8448764161PERL_BOVIN369-422541A:252-30554
1.10ENSBTAT0000001698610ENSBTAE00000137918chr19:8457180-8457432253PERL_BOVIN423-507851A:306-39085
1.11ENSBTAT0000001698611ENSBTAE00000137921chr19:8458505-8458678174PERL_BOVIN507-565591A:390-44859
1.12ENSBTAT0000001698612ENSBTAE00000137923chr19:8459302-8459539238PERL_BOVIN565-644801A:448-52780
1.13ENSBTAT0000001698613ENSBTAE00000279432chr19:8459727-8460382656PERL_BOVIN644-712691A:527-59569

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:595
 aligned with PERL_BOVIN | P80025 from UniProtKB/Swiss-Prot  Length:712

    Alignment length:595
                                   127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707     
           PERL_BOVIN   118 SWEVGCGAPVPLVKCDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGFRVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPETELGSNEHSKTQCEEYCIQGDNCFPIMFPKNDPKLKTQGKCMPFFRAGFVCPTPPYQSLAREQINAVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPSPCEFINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLGSEMQKWIPPYQGYNNSVDPRISNVFTFAFRFGHMEVPSTVSRLDENYQPWGPEAELPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKVSFSRLICDNTHITKVPLHAFQANNYPHDFVDCSTVDKLDLSPWASREN 712
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------An_peroxidase-2pt3A01 A:21-567                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ---------------------------- Pfam domains
         Sec.struct. author ........................................ee...............................hhhhhhhhhh........eeeeeehhhhhhhhhhhhhhh...........hhhhhhhhhh........ee.............ee.....................ee.......hhhhhh.hhhhhhhhh..............................hhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh.hhhhhh................hhhhhhhhhhhhh..eee.............eee.hhh...hhhhhh...hhhhhhhhhhheee........hhhhhh............hhhhhhhhhhhhh...hhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh...........hhhhhhhhh....hhhhhhhh...ee..............ee.hhh....hhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------PEROXIDASE_3  PDB: A:12-594 UniProt: 129-711                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           - PROSITE
           Transcript 1 (1) Exon 1.5  PDB: A:1-31          -------------------------------------------Exon 1.7  PDB: A:75-143 UniProt: 192-260                             Exon 1.8  PDB: A:144-252 UniProt: 261-369                                                                    -----------------------------------------------------Exon 1.10  PDB: A:306-390 UniProt: 423-507                                           ---------------------------------------------------------Exon 1.12  PDB: A:448-527 UniProt: 565-644                                      -------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ------------------------------Exon 1.6  PDB: A:31-74 UniProt: 148-191     ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9  PDB: A:252-305 UniProt: 369-422             ------------------------------------------------------------------------------------Exon 1.11  PDB: A:390-448 UniProt: 507-565                 ------------------------------------------------------------------------------Exon 1.13  PDB: A:527-595 UniProt: 644-712                            Transcript 1 (2)
                 2pt3 A   1 SWEVGCGAPVPLVKCDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGFRVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPETELGSNEHSKTQCEEYCIQGDNCFPIMFPKNDPKLKTQGKCMPFFRAGFVCPTPPYQSLAREQINAVTSFLDASLVYGSEPsLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPSPCEFINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLGSEMQKWIPPYQGYNNSVDPRISNVFTFAFRFGHMEVPSTVSRLDENYQPWGPEAELPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKVSFSRLICDNTHITKVPLHAFQANNYPHDFVDCSTVDKLDLSPWASREN 595
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590     
                                                                                                                                                                                                                               198-SEP
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2PT3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2PT3)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: An_peroxidase] (45)

(-) Gene Ontology  (19, 19)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (PERL_BOVIN | P80025)
molecular function
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0020037    heme binding    Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0004601    peroxidase activity    Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O.
    GO:0036393    thiocyanate peroxidase activity    Catalysis of the reaction: thiocyanate (SCN-) + hydrogen peroxide (H2O2) = hypothiocyanite (OSCN-) + 2 H2O. Catalyzes the hydrogen peroxide oxidation of thiocyanate.
biological process
    GO:0019731    antibacterial humoral response    An immune response against bacteria mediated through a body fluid. Examples of this process are the antibacterial humoral responses in Mus musculus and Drosophila melanogaster.
    GO:0098869    cellular oxidant detoxification    Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide.
    GO:0042742    defense response to bacterium    Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
    GO:0001580    detection of chemical stimulus involved in sensory perception of bitter taste    The series of events required for a bitter taste stimulus to be received and converted to a molecular signal.
    GO:0042744    hydrogen peroxide catabolic process    The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2).
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0006979    response to oxidative stress    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
    GO:0018969    thiocyanate metabolic process    The chemical reactions and pathways involving thiocyanate, the anion of thiocyanic acid, a toxic cyanide derivative commonly formed as a by-product in the production of gas for fuel, coke, and substances for chemical industries.
cellular component
    GO:0016323    basolateral plasma membrane    The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    CA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    HEM  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MAN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NAG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    PO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SEP  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
    DC1  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Tyr A:572 - Pro A:573   [ RasMol ]  
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym./Biol. Unit PNG format | Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2pt3
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  PERL_BOVIN | P80025
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  1.11.1.7
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  PERL_BOVIN | P80025
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PERL_BOVIN | P80025: 2gj1 2ips 2nqx 2pum 2qpk 2qqt 2qrb 3bxi 3eri 3gc1 3gcj 3gck 3gcl 3i6n 3krq 3nyh 3ogw 3py4 3q9k 3ql6 3r4x 3r5o 3s4f 3tgy 3tuw 3uba 3v6q 4gm7 4gn6 4ksz 4njb 4nt3 4pnx 5b72 5gh0 5gls 5wv3

(-) Related Entries Specified in the PDB File

2nqx CRYSTAL STRUCTURE OF BOVINE LACTOPEROXIDASE WITH IODIDE IONS AT 2.9A RESOLUTION
2pum CRYSTAL STRUCTURE OF BOVINE LACTOPEROXIDASE COMPLEX WITH CATECHOL AND IODIDE AT 2.7 A RESOLUTION