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(-) Description

Title :  CRYSTAL STRUCTURE OF BOVINE LACTOPEROXIDASE COMPLEXED WITH CYSTIENE AT 1.98A RESOLUTION
 
Authors :  R. P. Singh, N. Singh, A. K. Singh, M. Sinha, P. Kaur, S. Sharma, T. P. Sing
Date :  19 May 13  (Deposition) - 10 Jul 13  (Release) - 10 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.98
Chains :  Asym./Biol. Unit :  A
Keywords :  Heme Peroxidase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. P. Singh, N. Singh, A. K. Singh, M. Sinha, P. Kaur, S. Sharma, T. P. Singh
Crystal Structure Of Bovine Lactoperoxidase Complexed With Cystiene At 1. 98A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - LACTOPEROXIDASE
    Chains: A
    EC Number: 1.11.1.7
    Fragment: UNP RESIDUES 118-712
    Organism Common: BOVINE
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Synonym: LPO

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 22)

Asymmetric/Biological Unit (7, 22)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION
2CYS1Mod. Amino AcidCYSTEINE
3HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
4IOD11Ligand/IonIODIDE ION
5NAG5Ligand/IonN-ACETYL-D-GLUCOSAMINE
6SCN2Ligand/IonTHIOCYANATE ION
7SEP1Mod. Amino AcidPHOSPHOSERINE

(-) Sites  (19, 19)

Asymmetric Unit (19, 19)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREMET A:101 , GLY A:104 , GLN A:105 , ASP A:108 , ASP A:112 , PHE A:113 , ALA A:114 , ARG A:255 , GLU A:258 , GLN A:259 , THR A:344 , PHE A:347 , ARG A:348 , GLY A:350 , HIS A:351 , VAL A:354 , PHE A:380 , LEU A:433 , ILE A:436 , ARG A:440 , CYS A:620 , HOH A:901 , HOH A:983BINDING SITE FOR RESIDUE HEM A 601
02AC2SOFTWAREASP A:110 , THR A:184 , PHE A:186 , ASP A:188 , SER A:190BINDING SITE FOR RESIDUE CA A 602
03AC3SOFTWAREASN A:80BINDING SITE FOR RESIDUE IOD A 603
04AC4SOFTWARETHR A:425BINDING SITE FOR RESIDUE IOD A 604
05AC5SOFTWAREPHE A:229BINDING SITE FOR RESIDUE IOD A 605
06AC6SOFTWARETRP A:46 , VAL A:342 , TRP A:452BINDING SITE FOR RESIDUE IOD A 606
07AC7SOFTWAREARG A:397 , THR A:560BINDING SITE FOR RESIDUE IOD A 608
08AC8SOFTWAREHIS A:377BINDING SITE FOR RESIDUE IOD A 609
09AC9SOFTWAREARG A:96 , NAG A:618BINDING SITE FOR RESIDUE IOD A 610
10BC1SOFTWARELYS A:462BINDING SITE FOR RESIDUE IOD A 611
11BC2SOFTWAREALA A:225 , ARG A:271BINDING SITE FOR RESIDUE IOD A 612
12BC3SOFTWAREALA A:566 , PHE A:567BINDING SITE FOR RESIDUE IOD A 613
13BC4SOFTWARESEP A:198 , ARG A:202 , LYS A:474 , HOH A:758 , HOH A:832BINDING SITE FOR RESIDUE SCN A 619
14BC5SOFTWAREARG A:255 , GLU A:258 , PHE A:381 , HEM A:601 , HOH A:981BINDING SITE FOR RESIDUE CYS A 620
15BC6SOFTWAREPHE A:254 , HOH A:928BINDING SITE FOR RESIDUE SCN A 621
16BC7SOFTWAREASN A:95 , ARG A:96 , ILE A:315 , GLN A:568 , IOD A:610 , HOH A:731 , HOH A:893 , HOH A:980BINDING SITE FOR MONO-SACCHARIDE NAG A 618 BOUND TO ASN A 95
17BC8SOFTWAREASN A:205 , SER A:208 , LEU A:210 , ALA A:214 , VAL A:215 , GLN A:217 , HOH A:961BINDING SITE FOR MONO-SACCHARIDE NAG A 616 BOUND TO ASN A 205
18BC9SOFTWAREASN A:241 , ALA A:244 , TRP A:384 , HOH A:814BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 241 RESIDUES 614 TO 615
19CC1SOFTWAREASN A:332 , VAL A:335BINDING SITE FOR MONO-SACCHARIDE NAG A 617 BOUND TO ASN A 332

(-) SS Bonds  (7, 7)

Asymmetric/Biological Unit
No.Residues
1A:6 -A:167
2A:15 -A:28
3A:129 -A:139
4A:133 -A:157
5A:237 -A:248
6A:456 -A:513
7A:554 -A:579

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Lys A:233 -Pro A:234
2Tyr A:572 -Pro A:573

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KSZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KSZ)

(-) Exons   (0, 0)

(no "Exon" information available for 4KSZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:596
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........................................ee...............................hhhhhhhhhh........eeeeeehhhhhhhhhhhhhhh..............hhhhhhh........ee.....hhhhhhh.ee.....................ee.......hhhhhh.hhhhhhhhee......ee.....................hhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh................hhhhhhhhhhhhh..eee.............eee.hhhh..hhhhhh...hhhhhhhhhhheee........hhhhhh.ee......eeehhhhhhhhhhhhh...hhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh...........hhhhhhhhh..hhhhhhhhhh...eee............eee.hhh....hhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ksz A   1 SWEVGCGAPVPLVKCDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGFRVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPETELGSNEHSKTQCEEYCIQGDNCFPIMFPKNDPKLKTQGKCMPFFRAGFVCPTPPYQSLAREQINAVTSFLDASLVYGSEPsLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPSPCEFINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLGSEMQKWIPPYQGYNNSVDPRISNVFTFAFRFGHMEVPSTVSRLDENYQPWGPEAELPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKVSFSRLICDNTHITKVPLHAFQANNYPHDFVDCSTVDKLDLSPWASRENC 620
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590    ||
                                                                                                                                                                                                                               198-SEP                                                                                                                                                                                                                                                                                                                                                                                                      595|
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             620
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4KSZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KSZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KSZ)

(-) Gene Ontology  (19, 19)

Asymmetric/Biological Unit(hide GO term definitions)

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  1.11.1.7
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        PERL_BOVIN | P80025: 2gj1 2ips 2nqx 2pt3 2pum 2qpk 2qqt 2qrb 3bxi 3eri 3gc1 3gcj 3gck 3gcl 3i6n 3krq 3nyh 3ogw 3py4 3q9k 3ql6 3r4x 3r5o 3s4f 3tgy 3tuw 3uba 3v6q 4gm7 4gn6 4njb 4nt3 4pnx 5b72 5gh0 5gls 5wv3

(-) Related Entries Specified in the PDB File

3s4f CRYSTAL STRUCTURE OF THE COMPLEX OF BOVINE LACTOPEROXIDASE WITH 1H-PYRAZOLO[4,3-C] PYRIDINE AT 1.99 A RESOLUTION
3tuw CRYSTAL STRUCTURE OF LACTOPEROXIDASE COMPLEXED WITH PYRAZINAMIDE AT 2.2A RESOLUTION