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(-) Description

Title :  CRYSTAL STRUCTURE OF CONSERVED UNCHARACTERIZED PROTEIN PH0987 FROM PYROCOCCUS HORIKOSHII
 
Authors :  J. T. Swindell Ii, L. Chen, J. Zhu, A. Ebihara, A. Shinkai, S. Kuramitsu S. Yokoyama, Z-Q. Fu, J. Chrzas, J. P. Rose, B-C. Wang, Southeast Coll For Structural Genomics (Secsg), Riken Structural Genomics/P Initiative (Rsgi)
Date :  10 Apr 07  (Deposition) - 08 May 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.29
Chains :  Asym./Biol. Unit :  B
Keywords :  Ph0730, Pyrococcus Horikoshii, Structural Genomics, Southeast Collaboratory For Structural Genomics, Secsg, Psi, Protein Structure Initiative, Riken Structural Genomics/Proteomics Initiative, Rsgi, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. T. Swindell Ii, L. Chen, J. Zhu, A. Ebihara, A. Shinkai, S. Kuramitsu, S. Yokoyama, Z-Q. Fu, J. Chrzas, J. P. Rose, B-C. Wang
Crystal Structure Of Conserved Uncharacterized Protein Ph0987 From Pyrococcus Horikoshii.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN PH0987
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-11A
    Expression System Strain: BL21-CODONPLUS(DE3)-RIL-X
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PH0987
    Organism Scientific: PYROCOCCUS HORIKOSHII
    Organism Taxid: 70601
    Strain: OT3

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

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(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Phe B:15 -Gly B:16
2Val B:195 -Pro B:196

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain B from PDB  Type:PROTEIN  Length:216
 aligned with O58715_PYRHO | O58715 from UniProtKB/TrEMBL  Length:225

    Alignment length:216
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211      
         O58715_PYRHO     2 IIKPAGDSAFLISFGDEISEEINDRVHSLAKAIEKESPEWLVELVPAYSSLLVIYDPLKASYEEVESYLKRISAREVERIKGKTIEIPVAYGGEFGPDIEFVAQYNGLSVDDVIEIHSKPLYRVYFLGFLPGFAYLGGMDERIATPRLEKPRLKVPAGSVGIAGKQTGWYAIESPGGWRIIGRIPLRTFNPGKVPPSIVLPGDYVKFVPIDEKEFW 217
               SCOP domains d2phcb2 B:2-85 Uncharacterized protein PH0987                                       d2phcb1 B:86-217 Uncharacterized protein PH0987                                                                                      SCOP domains
               CATH domains 2phcB01 B:2-84  [code=3.30.1360.40, no name defined]                               2phcB02 B:85-217 Cyclophilin                                                                                                          CATH domains
               Pfam domains AHS1-2phcB01 B:2-200                                                                                                                                                                                   ----------------- Pfam domains
         Sec.struct. author .eee....eeeee.....hhhhhhhhhhhhhhhh......eeee.....eeeeee......hhhhhhhhhhhhhhhhhhhhh.eeeeeeee......hhhhhhhhhh.hhhhhhhhhhh..eeeeeee....eeeee..hhhhh.......eeee...eeeee..eeeee...eee..eeeee....................eeeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2phc B   2 IIKPAGDSAFLISFGDEISEEINDRVHSLAKAIEKESPEWLVELVPAYSSLLVIYDPLKASYEEVESYLKRISAREVERIKGKTIEIPVAYGGEFGPDIEFVAQYNGLSVDDVIEIHSKPLYRVYFLGFLPGFAYLGGMDERIATPRLEKPRLKVPAGSVGIAGKQTGWYAIESPGGWRIIGRIPLRTFNPGKVPPSIVLPGDYVKFVPIDEKEFW 217
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: Cyclophil-like (65)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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  Cis Peptide Bonds
    Phe B:15 - Gly B:16   [ RasMol ]  
    Val B:195 - Pro B:196   [ RasMol ]  
 

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