2PC6 - JenaLib

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Title :   CRYSTAL STRUCTURE OF PUTATIVE ACETOLACTATE SYNTHASE- SMALL SUBUNIT FROM NITROSOMONAS EUROPAEA

Authors :   J. J. Petkowski, M. Chruszcz, M. D. Zimmerman, H. Zheng, M. T. Cymborows T. Skarina, O. Onopriyenko, A. Savchenko, A. Edwards, W. Minor, A. Joa Midwest Center For Structural Genomics (Mcsg)

Date :   29 Mar 07 (Deposition) - 10 Apr 07 (Release) - 01 Feb 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.50

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,C  (1x)
Biol. Unit 2: B,D  (1x)

Keywords :   Acetolactate Synthase, Regulatory Subunit, Structural Genomics, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. J. Petkowski, M. Chruszcz, M. D. Zimmerman, H. Zheng, T. Skarina, O. Onopriyenko, M. T. Cymborowski, K. D. Koclega, A. Savchenko, A. Edwards, W. Minor
Crystal Structures Of Tm0549 And Ne1324--Two Orthologs Of E Coli Ahas Isozyme Iii Small Regulatory Subunit.
Protein Sci. V. 16 1360 2007
PubMed-ID: 17586771 | Reference-DOI: 10.1110/PS.072793807

Molecule 1 - PROBABLE ACETOLACTATE SYNTHASE ISOZYME III (SMALL SUBUNIT)
	Chains	:	A, B, C, D
	EC Number	:	4.1.3.18
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET15B
	Expression System Strain	:	BL21-GOLD(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	ILVH, NE1324
	Organism Scientific	:	NITROSOMONAS EUROPAEA ATCC 19718
	Organism Taxid	:	228410
	Strain	:	IFO 14298

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A		C
Biological Unit 2 (1x)	:		B		D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 26)

No.	Name	Count	Type	Full Name
1	CA	3	Ligand/Ion	CALCIUM ION
2	MSE	20	Mod. Amino Acid	SELENOMETHIONINE
3	UNL	3	Ligand/Ion	UNKNOWN LIGAND

Biological Unit 1 (2, 11)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	MSE	10	Mod. Amino Acid	SELENOMETHIONINE
3	UNL	1	Ligand/Ion	UNKNOWN LIGAND

Biological Unit 2 (2, 12)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	MSE	10	Mod. Amino Acid	SELENOMETHIONINE
3	UNL	2	Ligand/Ion	UNKNOWN LIGAND

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASN A:65 , LEU A:67 , VAL A:70 , HOH A:441 , HOH A:442	BINDING SITE FOR RESIDUE CA A 301
2	AC2	SOFTWARE	ASN C:65 , LEU C:67 , VAL C:70	BINDING SITE FOR RESIDUE CA C 302
3	AC3	SOFTWARE	ASN B:65 , LEU B:67 , VAL B:70 , HOH B:440	BINDING SITE FOR RESIDUE CA B 303
4	AC4	SOFTWARE	PHE A:108 , ILE C:112 , ILE C:113	BINDING SITE FOR RESIDUE UNL A 401
5	AC5	SOFTWARE	PHE B:108 , LYS B:130 , ARG B:156 , ILE D:113 , VAL D:115	BINDING SITE FOR RESIDUE UNL B 402
6	AC6	SOFTWARE	ILE A:112 , ILE A:113 , ASP A:114 , ARG C:156 , HOH C:325 , ILE D:107 , PHE D:108 , HOH D:411 , HOH D:420 , HOH D:427	BINDING SITE FOR RESIDUE UNL D 403

(no "SS Bond" information available for 2PC6)

(no "Cis Peptide Bond" information available for 2PC6)

(no "SAP(SNP)/Variant" information available for 2PC6)

(no "PROSITE Motif" information available for 2PC6)

(no "Exon" information available for 2PC6)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:164
 aligned with Q82UZ2_NITEU | Q82UZ2 from UniProtKB/TrEMBL  Length:163

    Alignment length:164
                             1                                                                                                                                                                  
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159    
         Q82UZ2_NITEU     - -MRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLIDLSSEGYVERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNELYTIELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSRGERVLKL 163
               SCOP domains d2pc6a2 A:0-77 Acetolactate synthase small subunit, IlvH                      d2pc6a1 A:78-163 Acetolactate synthase small subunit, IlvH                             SCOP domains
               CATH domains 2pc6A01 A:0-79  [code=3.30.70.260, no name defined]                             ------------------------------------------------------------------------------------ CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee...hhhhhhhhhhhhh.....eeeeee.....eeeeeeeeeehhhhhhhhhhhhhhh..eeeeee.hhh.eeeeeeeeeeee..hhhhhhhhhhhhhh..eeeeee..eeeeeeeehhhhhhhhhhhhhhh.eeeeee...eeee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pc6 A   0 HmRHIISLLmENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRmTLVTNGPDEIVEQITKQLNKLIEVVKLIDLSSEGYVERELmLVKVRAVGKDREEmKRLADIFRGNIIDVTNELYTIELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSRGERVLKL 163
                             |       9        19        29        39      | 49        59        69        79       |89        99 |     109       119       129       139       149       159    
                             |       9-MSE                               46-MSE                                   87-MSE       101-MSE                                                          
                             1-MSE

Chain B from PDB  Type:PROTEIN  Length:163
 aligned with Q82UZ2_NITEU | Q82UZ2 from UniProtKB/TrEMBL  Length:163

    Alignment length:163
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160   
         Q82UZ2_NITEU     1 MRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLIDLSSEGYVERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNELYTIELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSRGERVLKL 163
               SCOP domains d2pc6b2 B:1-77 Acetolactate synthase small subunit, IlvH                     d2pc6b1 B:78-163 Acetolactate synthase small subunit, IlvH                             SCOP domains
               CATH domains -2pc6B01 B:2-79  [code=3.30.70.260, no name defined]                           ------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee.hhhhhhhhhhhhhhhh....eeeeee.....eeeeeeeee.hhhhhhhhhhhhhhh..eeeeee.hhh.eeeeeeeeeeee..hhhhhhhhhhhhhh..eeeee...eeeeeeeehhhhhhhhhhhhhhh.eeeeee...eeee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pc6 B   1 mRHIISLLmENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRmTLVTNGPDEIVEQITKQLNKLIEVVKLIDLSSEGYVERELmLVKVRAVGKDREEmKRLADIFRGNIIDVTNELYTIELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSRGERVLKL 163
                            |       10        20        30        40     |  50        60        70        80      | 90       100|      110       120       130       140       150       160   
                            1-MSE   9-MSE                               46-MSE                                   87-MSE       101-MSE

Chain C from PDB  Type:PROTEIN  Length:164
 aligned with Q82UZ2_NITEU | Q82UZ2 from UniProtKB/TrEMBL  Length:163

    Alignment length:164
                             1                                                                                                                                                                  
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159    
         Q82UZ2_NITEU     - -MRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLIDLSSEGYVERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNELYTIELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSRGERVLKL 163
               SCOP domains d2pc6c2 C:0-77 Acetolactate synthase small subunit, IlvH                      d2pc6c1 C:78-163 Acetolactate synthase small subunit, IlvH                             SCOP domains
               CATH domains 2pc6C01 C:0-79  [code=3.30.70.260, no name defined]                             ------------------------------------------------------------------------------------ CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee....hhhhhhhhhhhh...eeeeeeee.....eeeeeeeee.hhhhhhhhhhhhhh...eeeeee.hhh.eeeeeeeeeeee..hhhhhhhhhhhhhhh.eeeee...eeeeeeeehhhhhhhhhhhh....eeeeee...eeee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pc6 C   0 HmRHIISLLmENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRmTLVTNGPDEIVEQITKQLNKLIEVVKLIDLSSEGYVERELmLVKVRAVGKDREEmKRLADIFRGNIIDVTNELYTIELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSRGERVLKL 163
                             |       9        19        29        39      | 49        59        69        79       |89        99 |     109       119       129       139       149       159    
                             1-MSE   9-MSE                               46-MSE                                   87-MSE       101-MSE

Chain D from PDB  Type:PROTEIN  Length:162
 aligned with Q82UZ2_NITEU | Q82UZ2 from UniProtKB/TrEMBL  Length:163

    Alignment length:163
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160   
         Q82UZ2_NITEU     1 MRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLIDLSSEGYVERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNELYTIELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSRGERVLKL 163
               SCOP domains d2pc6d2 D:1-77 Acetolactate synthase small subunit, IlvH                     d2pc6d1 D:78-163 Acetolactate synthase small subunit, IlvH                             SCOP domains
               CATH domains -2pc6D01 D:2-79  [code=3.30.70.260, no name defined]                           ------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) ----------ACT_5-2pc6D01 D:11-73                                          ---------ALS_ss_C-2pc6D05 D:83-157                                                  ------ Pfam domains (1)
           Pfam domains (2) ----------ACT_5-2pc6D02 D:11-73                                          ---------ALS_ss_C-2pc6D06 D:83-157                                                  ------ Pfam domains (2)
           Pfam domains (3) ----------ACT_5-2pc6D03 D:11-73                                          ---------ALS_ss_C-2pc6D07 D:83-157                                                  ------ Pfam domains (3)
           Pfam domains (4) ----------ACT_5-2pc6D04 D:11-73                                          ---------ALS_ss_C-2pc6D08 D:83-157                                                  ------ Pfam domains (4)
         Sec.struct. author ..eeeeeeee..hhhhhhhhhhhhhh.....eeeeee.....eeeeeeee....hhhhhhhhhhh...-..eeehhhhh.eeeeeeeeeeee..hhhhhhhhhhhhhh..eeeeee..eeeeeeeehhhhhhhhhhhhhhh.eeeeeeeeeeeee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pc6 D   1 mRHIISLLmENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRmTLVTNGPDEIVEQITKQLNKLI-VVKLIDLSSEGYVERELmLVKVRAVGKDREEmKRLADIFRGNIIDVTNELYTIELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSRGERVLKL 163
                            |       10        20        30        40     |  50        60       |70        80      | 90       100|      110       120       130       140       150       160   
                            1-MSE   9-MSE                               46-MSE                68 |               87-MSE       101-MSE                                                          
                                                                                                70

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Ferredoxin-like (1795)

Superfamily: ACT-like (63)

Family: IlvH-like (3)

Protein domain: Acetolactate synthase small subunit, IlvH (3)

Nitrosomonas europaea [TaxId: 915] (1)

1a	d2pc6a1	A:78-163
1b	d2pc6a2	A:0-77
1c	d2pc6b1	B:78-163
1d	d2pc6b2	B:1-77
1e	d2pc6c1	C:78-163
1f	d2pc6c2	C:0-77
1g	d2pc6d1	D:78-163
1h	d2pc6d2	D:1-77

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Alpha-Beta Plaits (1688)

Homologous Superfamily: [code=3.30.70.260, no name defined] (34)

Nitrosomonas europaea atcc 19718. Organism_taxid: 228410. Strain: ifo14298. (1)

1a	2pc6A01	A:0-79
1b	2pc6C01	C:0-79
1c	2pc6B01	B:2-79
1d	2pc6D01	D:2-79

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: ACT (34)

Family: ACT_5 (1)

Nitrosomonas europaea (1)

1a	ACT_5-2pc6D01	D:11-73
1b	ACT_5-2pc6D02	D:11-73
1c	ACT_5-2pc6D03	D:11-73
1d	ACT_5-2pc6D04	D:11-73

Clan: no clan defined [family: ALS_ss_C] (1)

Family: ALS_ss_C (1)

Nitrosomonas europaea (1)

2a	ALS_ss_C-2pc6D05	D:83-157
2b	ALS_ss_C-2pc6D06	D:83-157
2c	ALS_ss_C-2pc6D07	D:83-157
2d	ALS_ss_C-2pc6D08	D:83-157

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (Q82UZ2_NITEU | Q82UZ2)

molecular function
	GO:0003984	acetolactate synthase activity	Catalysis of the reaction: 2 pyruvate = 2-acetolactate + CO2.
	GO:0016597	amino acid binding	Interacting selectively and non-covalently with an amino acid, organic acids containing one or more amino substituents.
	GO:0016829	lyase activity	Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0009082	branched-chain amino acid biosynthetic process	The chemical reactions and pathways resulting in the formation of amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

Asymmetric Unit
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	2pc6
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2fgc	CRYSTAL STRUCTURE OF ACETOLACTATE SYNTHASE - SMALL SUBUNIT FROM THERMOTOGA MARITIMA
2fgd	CRYSTAL STRUCTURE OF PUTATIVE ACETOLACTATE SYNTHASE - SMALL SUBUNIT FROM NITROSOMONAS EUROPAEA

Description

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Ligands, Modified Residues, Ions (3, 26)

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