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(-) Description

Title :  CRYSTAL STRUCTURE OF G336V MUTANT OF E.COLI PHOSPHOGLYCERATE DEHYDROGENASE
 
Authors :  S. Dey, J. C. Sacchettini
Date :  25 Mar 07  (Deposition) - 24 Apr 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Oxidoreductase, G336V Mutant, Phosphoglycerate Dehydrogenase, Serine Biosynthesis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Dey, Z. Hu, X. L. Xu, J. C. Sacchettini, G. A. Grant
The Effect Of Hinge Mutations On Effector Binding And Domain Rotation In Escherichia Coli D-3-Phosphoglycerate Dehydrogenase
J. Biol. Chem. V. 282 18418 2007
PubMed-ID: 17459882  |  Reference-DOI: 10.1074/JBC.M701174200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - D-3-PHOSPHOGLYCERATE DEHYDROGENASE
    Chains: A, B, C, D
    EC Number: 1.1.1.95
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PTRC99
    Expression System Strain: DH5ALPHA
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: SERA
    Mutation: YES
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Synonym: PGDH

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 19)

Asymmetric/Biological Unit (4, 19)
No.NameCountTypeFull Name
1CIT6Ligand/IonCITRIC ACID
2NAI4Ligand/Ion1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
3PO48Ligand/IonPHOSPHATE ION
4SO41Ligand/IonSULFATE ION

(-) Sites  (19, 19)

Asymmetric Unit (19, 19)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS B:196 , LEU B:197 , SER B:198BINDING SITE FOR RESIDUE PO4 B 499
02AC2SOFTWARELEU A:142 , ALA A:143 , ALA A:144 , ARG B:60BINDING SITE FOR RESIDUE PO4 A 500
03AC3SOFTWAREARG C:60 , HOH C:589 , LEU D:142 , ALA D:143 , ALA D:144BINDING SITE FOR RESIDUE PO4 C 501
04AC4SOFTWARELEU C:142 , ALA C:143 , ALA C:144 , ARG D:60BINDING SITE FOR RESIDUE PO4 C 502
05AC5SOFTWAREARG A:60 , LEU B:142 , ALA B:143 , ALA B:144BINDING SITE FOR RESIDUE PO4 B 503
06AC6SOFTWAREGLY A:85 , THR A:86 , ASN A:87 , ARG A:240BINDING SITE FOR RESIDUE PO4 A 504
07AC7SOFTWAREARG D:60 , SER D:61 , ALA D:83BINDING SITE FOR RESIDUE PO4 D 505
08AC8SOFTWAREHIS C:38 , LYS C:39 , GLY C:40BINDING SITE FOR RESIDUE SO4 C 506
09AC9SOFTWAREHIS D:38 , LYS D:39 , GLY D:40BINDING SITE FOR RESIDUE PO4 D 507
10BC1SOFTWAREILE A:84 , PHE A:106 , GLY A:158 , GLY A:160 , HIS A:161 , ILE A:162 , TYR A:180 , ASP A:181 , ILE A:182 , LYS A:185 , HIS A:210 , VAL A:211 , PRO A:212 , SER A:216 , THR A:217 , MET A:220 , ALA A:238 , SER A:239 , ARG A:240 , ASP A:264 , VAL A:265 , HIS A:292 , GLY A:294 , GLY A:295BINDING SITE FOR RESIDUE NAI A 508
11BC2SOFTWAREILE B:84 , PHE B:106 , ASN B:108 , VAL B:112 , TYR B:159 , GLY B:160 , HIS B:161 , ILE B:162 , ASP B:181 , ILE B:182 , HIS B:210 , VAL B:211 , PRO B:212 , SER B:216 , MET B:220 , ALA B:238 , SER B:239 , ARG B:240 , ASP B:264 , HIS B:292 , GLY B:294 , GLY B:295BINDING SITE FOR RESIDUE NAI B 509
12BC3SOFTWAREILE C:84 , PHE C:106 , ASN C:108 , VAL C:112 , GLY C:158 , GLY C:160 , HIS C:161 , ILE C:162 , ASP C:181 , ILE C:182 , HIS C:210 , VAL C:211 , PRO C:212 , SER C:216 , ALA C:238 , SER C:239 , ARG C:240 , ASP C:264 , HIS C:292 , GLY C:294 , GLY C:295BINDING SITE FOR RESIDUE NAI C 510
13BC4SOFTWAREASN D:108 , VAL D:112 , GLY D:158 , TYR D:159 , GLY D:160 , HIS D:161 , ILE D:162 , TYR D:180 , ASP D:181 , ILE D:182 , LYS D:185 , HIS D:210 , VAL D:211 , PRO D:212 , SER D:216 , ALA D:238 , SER D:239 , ARG D:240 , ASP D:264 , VAL D:265 , HIS D:292 , GLY D:294 , GLY D:295 , HOH D:558BINDING SITE FOR RESIDUE NAI D 511
14BC5SOFTWARELYS B:39 , TYR D:180 , HIS D:196 , LEU D:197 , SER D:198 , GLU D:225BINDING SITE FOR RESIDUE CIT D 513
15BC6SOFTWARETYR A:180 , HIS A:196 , LEU A:197 , SER A:198BINDING SITE FOR RESIDUE CIT A 514
16BC7SOFTWARETYR C:180 , HIS C:196 , LEU C:197 , SER C:198BINDING SITE FOR RESIDUE CIT C 515
17BC8SOFTWARELYS A:141 , ARG B:60 , SER B:61 , ALA B:83 , ILE B:84 , GLY B:85 , ASN B:108BINDING SITE FOR RESIDUE CIT B 516
18BC9SOFTWAREARG C:60 , SER C:61 , ALA C:83 , ILE C:84 , ASN C:108 , HOH C:553 , LYS D:141BINDING SITE FOR RESIDUE CIT C 517
19CC1SOFTWAREPHE A:37 , HIS A:38 , LYS A:39 , GLY A:40 , ALA A:41 , LEU A:42BINDING SITE FOR RESIDUE CIT A 518

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2P9E)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2P9E)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2P9E)

(-) PROSITE Motifs  (4, 16)

Asymmetric/Biological Unit (4, 16)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1D_2_HYDROXYACID_DH_1PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature.SERA_ECOLI154-181
 
 
 		  4A:154-181
B:154-181
C:154-181
D:154-181
2D_2_HYDROXYACID_DH_2PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2.SERA_ECOLI200-222
 
 
 		  4A:200-222
B:200-222
C:200-222
D:200-222
3D_2_HYDROXYACID_DH_3PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3.SERA_ECOLI229-245
 
 
 		  4A:229-245
B:229-245
C:229-245
D:229-245
4ACTPS51671 ACT domain profile.SERA_ECOLI339-410
 
 
 		  4A:339-410
B:339-410
C:339-410
D:339-410

(-) Exons   (0, 0)

(no "Exon" information available for 2P9E)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:406
 aligned with SERA_ECOLI | P0A9T0 from UniProtKB/Swiss-Prot  Length:410

    Alignment length:406
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404      
           SERA_ECOLI     5 SLEKDKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNFPEVSLPLHGGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLLY 410
               SCOP domains --d2p9ea2 A:7-107,A:296-326 Phosphoglycerate dehydrogenase                                             d2p9ea1 A:108-295 Phosphoglycerate dehydrogenase                                                                                                                                            d2p9ea2 A:7-107,A:296-326      d2p9ea3 A:327-410 Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain     SCOP domains
               CATH domains 2p9eA01 A:5-108,A:298-326 NAD(P)-binding Rossmann-like Domain                                           2p9eA02 A:109-297 NAD(P)-binding Rossmann-like Domain                                                                                                                                        2p9eA01 A:5-108,A:298-326    -2p9eA03 A:328-409  [code=3.30.70.260, no name defined]                            - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh.eee....hhhhhhhhhhh....eee.....hhhhhhhhhhh..eeee......hhhhhhhh................hhhhhhhh...ee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh................eeeee..hhhhhhhhhhhhhh..eeeee...........ee..hhhhhhhhh.eeee............hhhhhhhh...eeeee.......hhhhhhhhhhh..eeeeee.......................eee.......hhhhhhhhhhhhhhhhhhhhhhh..................eeeeeeee...hhhhhhhhhhhh....eeeeeeeee..eeeeeeee..hhhhhhhhhhhhhh...eeeeeeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------D_2_HYDROXYACID_DH_1        ------------------D_2_HYDROXYACID_DH_2   ------D_2_HYDROXYACID_D---------------------------------------------------------------------------------------------ACT  PDB: A:339-410 UniProt: 339-410                                     PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2p9e A   5 SLEKDKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNFPEVSLPLHVGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLLY 410
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404      


Chain B from PDB  Type:PROTEIN  Length:404
 aligned with SERA_ECOLI | P0A9T0 from UniProtKB/Swiss-Prot  Length:410

    Alignment length:404
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406    
           SERA_ECOLI     7 EKDKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNFPEVSLPLHGGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLLY 410
               SCOP domains d2p9eb2 B:7-107,B:296-326 Phosphoglycerate dehydrogenase                                             d2p9eb1 B:108-295 Phosphoglycerate dehydrogenase                                                                                                                                            d2p9eb2 B:7-107,B:296-326      d2p9eb3 B:327-410 Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain     SCOP domains
               CATH domains 2p9eB01 B:7-108,B:298-326 NAD(P)-binding Rossmann-like Domain                                         2p9eB02 B:109-297 NAD(P)-binding Rossmann-like Domain                                                                                                                                        2p9eB01 B:7-108,B:298-326    -2p9eB03 B:328-409  [code=3.30.70.260, no name defined]                            - CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh.eee....hhhhhhhhhhh....eee.....hhhhhhhhhh...eeee......hhhhhhhh................hhhhhhhh...ee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh................eeeee..hhhhhhhhhhhhhh..eeeee...........ee..hhhhhhhhh.eeee............hhhhhhh....eeeee.......hhhhhhhhhhh..eeeeee................hhhhh..eee.......hhhhhhhhhhhhhhhhhhhhhhh..................eeeeeeee...hhhhhhhhhhhhh.....eeeeee...eeeeeeee..hhhhhhhhhhhhh....eeeeeeee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------D_2_HYDROXYACID_DH_1        ------------------D_2_HYDROXYACID_DH_2   ------D_2_HYDROXYACID_D---------------------------------------------------------------------------------------------ACT  PDB: B:339-410 UniProt: 339-410                                     PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2p9e B   7 EKDKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNFPEVSLPLHVGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLLY 410
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406    


Chain C from PDB  Type:PROTEIN  Length:406
 aligned with SERA_ECOLI | P0A9T0 from UniProtKB/Swiss-Prot  Length:410

    Alignment length:406
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404      
           SERA_ECOLI     5 SLEKDKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNFPEVSLPLHGGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLLY 410
               SCOP domains --d2p9ec2 C:7-107,C:296-326 Phosphoglycerate dehydrogenase                                             d2p9ec1 C:108-295 Phosphoglycerate dehydrogenase                                                                                                                                            d2p9ec2 C:7-107,C:296-326      d2p9ec3 C:327-410 Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain     SCOP domains
               CATH domains 2p9eC01 C:5-108,C:298-326 NAD(P)-binding Rossmann-like Domain                                           2p9eC02 C:109-297 NAD(P)-binding Rossmann-like Domain                                                                                                                                        2p9eC01 C:5-108,C:298-326    -2p9eC03 C:328-409  [code=3.30.70.260, no name defined]                            - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh..eee.....hhhhhhhhh.....eee.....hhhhhhhhhh...eeee......hhhhhh..................hhhhhhhh...ee.....hhhhhhhhhhhhhhhhh.hhhhhhhhhhhh...............eeeee..hhhhhhhhhhhhhh..eeeee...........ee..hhhhhhhhh.eeee............hhhhhhhh....eeee.......hhhhhhhhhhhh...eeee...............hhhhhh..eee.......hhhhhhhhhhhhhhhhhhhhhhh..................eeeeeeee...hhhhhhhhhhhhhh.eeeeeeeee...eeeeeeeee.hhhhhhhhhhhhh....eeeeeeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------D_2_HYDROXYACID_DH_1        ------------------D_2_HYDROXYACID_DH_2   ------D_2_HYDROXYACID_D---------------------------------------------------------------------------------------------ACT  PDB: C:339-410 UniProt: 339-410                                     PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2p9e C   5 SLEKDKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNFPEVSLPLHVGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLLY 410
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404      


Chain D from PDB  Type:PROTEIN  Length:403
 aligned with SERA_ECOLI | P0A9T0 from UniProtKB/Swiss-Prot  Length:410

    Alignment length:403
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407   
           SERA_ECOLI     8 KDKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNFPEVSLPLHGGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLLY 410
               SCOP domains d2p9ed2 D:8-107,D:296-326 Phosphoglycerate dehydrogenase                                            d2p9ed1 D:108-295 Phosphoglycerate dehydrogenase                                                                                                                                            d2p9ed2 D:8-107,D:296-326      d2p9ed3 D:327-410 Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain     SCOP domains
               CATH domains 2p9eD01 D:8-108,D:298-326 NAD(P)-binding Rossmann-like Domain                                        2p9eD02 D:109-297 NAD(P)-binding Rossmann-like Domain                                                                                                                                        2p9eD01 D:8-108,D:298-326    -2p9eD03 D:328-409  [code=3.30.70.260, no name defined]                            - CATH domains
           Pfam domains (1) -----2-Hacid_dh-2p9eD05 D:13-326                                                                                                                                                                                                                                                                                               ------------ACT-2p9eD01 D:339-402                                           -------- Pfam domains (1)
           Pfam domains (2) -----2-Hacid_dh-2p9eD06 D:13-326                                                                                                                                                                                                                                                                                               ------------ACT-2p9eD02 D:339-402                                           -------- Pfam domains (2)
           Pfam domains (3) -----2-Hacid_dh-2p9eD07 D:13-326                                                                                                                                                                                                                                                                                               ------------ACT-2p9eD03 D:339-402                                           -------- Pfam domains (3)
           Pfam domains (4) -----2-Hacid_dh-2p9eD08 D:13-326                                                                                                                                                                                                                                                                                               ------------ACT-2p9eD04 D:339-402                                           -------- Pfam domains (4)
           Pfam domains (5) -------------------------------------------------------------------------------------------------------------2-Hacid_dh_C-2p9eD09 D:117-294                                                                                                                                                    -------------------------------------------------------------------------------------------------------------------- Pfam domains (5)
           Pfam domains (6) -------------------------------------------------------------------------------------------------------------2-Hacid_dh_C-2p9eD10 D:117-294                                                                                                                                                    -------------------------------------------------------------------------------------------------------------------- Pfam domains (6)
           Pfam domains (7) -------------------------------------------------------------------------------------------------------------2-Hacid_dh_C-2p9eD11 D:117-294                                                                                                                                                    -------------------------------------------------------------------------------------------------------------------- Pfam domains (7)
           Pfam domains (8) -------------------------------------------------------------------------------------------------------------2-Hacid_dh_C-2p9eD12 D:117-294                                                                                                                                                    -------------------------------------------------------------------------------------------------------------------- Pfam domains (8)
         Sec.struct. author .....eeee...hhhhhhhhhhh....eeee....hhhhhhhhhh...eeee......hhhhhhhh................hhhhhhhh...ee.....hhhhhhhhhhhhhhhhh.hhhhhhhhhhh................eeeee..hhhhhhhhhhhhhh..eeeee...........ee..hhhhhhhhh.eeee............hhhhhhhh...eeeee.......hhhhhhhhhhh..eeeeee...............hhhhhh..eee.......hhhhhhhhhhhhhhhhhhhhhhh..................eeeeeeee...hhhhhhhhhhhhhh..eeeeeeee...eeeeeeee..hhhhhhhhhhhhhh...eeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------D_2_HYDROXYACID_DH_1        ------------------D_2_HYDROXYACID_DH_2   ------D_2_HYDROXYACID_D---------------------------------------------------------------------------------------------ACT  PDB: D:339-410 UniProt: 339-410                                     PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2p9e D   8 KDKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNFPEVSLPLHVGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLLY 410
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 12)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 12)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (3, 12)

Asymmetric/Biological Unit
(-)
Clan: ACT (34)
(-)
Family: ACT (19)
(-)
Escherichia coli (strain K12) (5)
1aACT-2p9eD01D:339-402
1bACT-2p9eD02D:339-402
1cACT-2p9eD03D:339-402
1dACT-2p9eD04D:339-402
(-)
Clan: Form_Glyc_dh (56)
(-)
Clan: NADP_Rossmann (1239)

(-) Gene Ontology  (13, 13)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (SERA_ECOLI | P0A9T0)
molecular function
    GO:0047545    2-hydroxyglutarate dehydrogenase activity    Catalysis of the reaction: (S)-2-hydroxyglutarate + acceptor = 2-oxoglutarate + reduced acceptor.
    GO:0051287    NAD binding    Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
    GO:0016597    amino acid binding    Interacting selectively and non-covalently with an amino acid, organic acids containing one or more amino substituents.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016616    oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
    GO:0004617    phosphoglycerate dehydrogenase activity    Catalysis of the reaction: 3-phosphoglycerate + NAD+ = 3-phosphohydroxypyruvate + NADH + H+.
    GO:0070905    serine binding    Interacting selectively and non-covalently with 2-amino-3-hydroxypropanoic acid.
biological process
    GO:0006564    L-serine biosynthetic process    The chemical reactions and pathways resulting in the formation of L-serine, the L-enantiomer of serine, i.e. (2S)-2-amino-3-hydroxypropanoic acid.
    GO:0008652    cellular amino acid biosynthetic process    The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

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  1.1.1.95
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SERA_ECOLI | P0A9T0: 1psd 1sc6 1yba 2p9c 2p9g 2pa3

(-) Related Entries Specified in the PDB File

2p9c