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(-) Description

Title :  CRYSTAL STRUCTURE OF GH78 FAMILY RHAMNOSIDASE OF BACILLUS SP. GL1 AT 1.9 A
 
Authors :  Z. Cui, B. Mikami, W. Hashimoto, K. Murata
Date :  17 Jan 07  (Deposition) - 13 Nov 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  A,B  (1x)
Keywords :  Alpha Barrel, Rhamnosidase, Glycoside Hydrolase Family 78, Invertase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. Cui, Y. Maruyama, B. Mikami, W. Hashimoto, K. Murata
Crystal Structure Of Glycoside Hydrolase Family 78 Alpha-L-Rhamnosidase From Bacillus Sp. Gl1
J. Mol. Biol. V. 374 384 2007
PubMed-ID: 17936784  |  Reference-DOI: 10.1016/J.JMB.2007.09.003

(-) Compounds

Molecule 1 - RHAMNOSIDASE B
    Chains: A, B
    EC Number: 3.2.1.40
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET3A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: RHAB
    Organism Scientific: BACILLUS SP.
    Organism Taxid: 84635
    Strain: GL1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B
Biological Unit 3 (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 47)

Asymmetric Unit (2, 47)
No.NameCountTypeFull Name
1CA4Ligand/IonCALCIUM ION
2GOL43Ligand/IonGLYCEROL
Biological Unit 1 (1, 21)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2GOL21Ligand/IonGLYCEROL
Biological Unit 2 (1, 22)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2GOL22Ligand/IonGLYCEROL
Biological Unit 3 (1, 43)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2GOL43Ligand/IonGLYCEROL

(-) Sites  (47, 47)

Asymmetric Unit (47, 47)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREVAL A:423 , HIS A:522 , GOL A:3040 , HOH A:4755 , HOH A:4756 , HOH A:4757BINDING SITE FOR RESIDUE CA A 4001
02AC2SOFTWAREGLU A:946 , LYS B:953 , GOL B:3041 , HOH B:4705 , HOH B:4874 , HOH B:4875BINDING SITE FOR RESIDUE CA B 4002
03AC3SOFTWAREVAL B:423 , HIS B:522 , GOL B:3042 , HOH B:4700 , HOH B:4701 , HOH B:4702BINDING SITE FOR RESIDUE CA B 4003
04AC4SOFTWARELYS A:953 , GOL A:3039 , GOL A:3043 , GLU B:946 , HOH B:4704BINDING SITE FOR RESIDUE CA A 4004
05AC5SOFTWAREGLN A:58 , VAL A:59 , GLY A:60 , GLU A:200 , ARG A:527 , HOH A:4582 , HOH A:4589BINDING SITE FOR RESIDUE GOL A 3001
06AC6SOFTWARETRP A:163 , TYR A:497 , VAL A:498 , HOH A:4587 , HOH A:4835BINDING SITE FOR RESIDUE GOL A 3002
07AC7SOFTWAREPHE A:262 , GLY A:265 , VAL A:266 , ARG A:267 , SER A:314 , HIS A:315 , PHE A:316 , HOH A:4466BINDING SITE FOR RESIDUE GOL A 3003
08AC8SOFTWARETRP A:403 , HOH A:4267 , HOH A:4606BINDING SITE FOR RESIDUE GOL A 3004
09AC9SOFTWAREGLN B:58 , VAL B:59 , GLY B:60 , GLU B:200 , ARG B:527 , HOH B:4413BINDING SITE FOR RESIDUE GOL B 3005
10BC1SOFTWARESER A:542 , TRP A:900 , HOH A:4111 , HOH A:4317 , HOH A:4736 , HOH A:4737 , LEU B:545 , GLY B:829BINDING SITE FOR RESIDUE GOL A 3006
11BC2SOFTWAREASP A:567 , GLU A:572 , TRP A:576 , ASP A:579 , TRP A:629 , GLU A:841 , ARG A:858 , HIS A:862 , TRP A:864 , HOH A:4018BINDING SITE FOR RESIDUE GOL A 3007
12BC3SOFTWAREMET A:764 , GLN A:797 , ILE A:798 , ASP A:823 , ARG A:826 , ASN A:827 , GOL A:3019BINDING SITE FOR RESIDUE GOL A 3008
13BC4SOFTWARELEU A:545 , GLY A:829 , SER B:542 , TRP B:900 , HOH B:4422BINDING SITE FOR RESIDUE GOL B 3009
14BC5SOFTWARETRP B:163 , TYR B:497 , VAL B:498 , HOH B:4254 , HOH B:4449 , HOH B:4611 , HOH B:4727BINDING SITE FOR RESIDUE GOL B 3010
15BC6SOFTWAREILE B:798 , ASN B:827 , GLN B:830 , TYR B:843 , GOL B:3020 , HOH B:4574 , HOH B:4793BINDING SITE FOR RESIDUE GOL B 3011
16BC7SOFTWARELEU B:223 , GLY B:265 , VAL B:266 , ARG B:267 , SER B:314 , HIS B:315 , PHE B:316 , HOH B:4317BINDING SITE FOR RESIDUE GOL B 3012
17BC8SOFTWARETRP B:403 , HOH B:4304 , HOH B:4503BINDING SITE FOR RESIDUE GOL B 3013
18BC9SOFTWAREASP B:567 , GLU B:572 , TRP B:576 , ASP B:579 , TRP B:629 , ARG B:858 , HIS B:862 , TRP B:864 , GOL B:3025 , HOH B:4097BINDING SITE FOR RESIDUE GOL B 3014
19CC1SOFTWARETHR A:279 , GLU A:280 , TRP A:281 , HOH A:4703BINDING SITE FOR RESIDUE GOL A 3015
20CC2SOFTWARETHR B:279 , GLU B:280 , TRP B:281 , HOH B:4713BINDING SITE FOR RESIDUE GOL B 3016
21CC3SOFTWARETYR A:245 , TYR A:364 , ARG A:365 , PRO A:368 , GLU A:369 , HOH A:4849BINDING SITE FOR RESIDUE GOL A 3017
22CC4SOFTWARETYR B:245 , SER B:269 , TYR B:364 , ARG B:365 , PRO B:368 , GLU B:369BINDING SITE FOR RESIDUE GOL B 3018
23CC5SOFTWAREILE A:798 , ARG A:826 , ASN A:827 , GLN A:830 , TYR A:843 , PHE A:846 , GOL A:3008 , HOH A:4808BINDING SITE FOR RESIDUE GOL A 3019
24CC6SOFTWAREMET B:764 , GLN B:797 , ILE B:798 , ASP B:823 , ARG B:826 , ASN B:827 , GOL B:3011 , HOH B:4095BINDING SITE FOR RESIDUE GOL B 3020
25CC7SOFTWAREGLU A:425 , SER B:75 , ARG B:193 , ILE B:195 , PHE B:197 , HOH B:4204 , HOH B:4720BINDING SITE FOR RESIDUE GOL B 3021
26CC8SOFTWARESER A:75 , ARG A:193 , ILE A:195 , PRO A:196 , PHE A:197 , HOH A:4109 , HOH A:4665 , GLU B:425BINDING SITE FOR RESIDUE GOL A 3022
27CC9SOFTWAREGLU A:201 , HOH A:4113 , TYR B:204 , PRO B:205 , HOH B:4132BINDING SITE FOR RESIDUE GOL A 3023
28DC1SOFTWAREPRO A:205 , ALA A:206 , GLU B:201 , GLN B:528 , ARG B:558 , HOH B:4124 , HOH B:4403BINDING SITE FOR RESIDUE GOL B 3024
29DC2SOFTWAREPHE B:102 , GLN B:147 , GLU B:572 , TRP B:576 , ASN B:849 , ARG B:858 , GOL B:3014BINDING SITE FOR RESIDUE GOL B 3025
30DC3SOFTWAREGLN A:147 , GLU A:572 , TRP A:679 , TRP A:684 , HOH A:4863BINDING SITE FOR RESIDUE GOL A 3026
31DC4SOFTWAREGLU A:70 , VAL A:191 , ASP A:194 , ASN A:602 , HOH A:4097 , HOH A:4326 , HOH A:4439 , HOH A:4620BINDING SITE FOR RESIDUE GOL A 3027
32DC5SOFTWAREGLU B:70 , VAL B:191 , ASN B:602 , HOH B:4238BINDING SITE FOR RESIDUE GOL B 3028
33DC6SOFTWAREGLY B:28 , SER B:29 , ALA B:128 , ARG B:130 , HOH B:4877BINDING SITE FOR RESIDUE GOL B 3029
34DC7SOFTWAREGLY A:28 , SER A:29 , ALA A:128 , HOH A:4391 , HOH A:4760BINDING SITE FOR RESIDUE GOL A 3030
35DC8SOFTWAREARG A:157BINDING SITE FOR RESIDUE GOL A 3031
36DC9SOFTWAREARG A:327 , ARG B:157 , GLU B:158 , LEU B:159 , ARG B:491 , HOH B:4849BINDING SITE FOR RESIDUE GOL B 3032
37EC1SOFTWAREARG A:213 , ARG A:410 , PHE A:432 , GLU A:433 , ASP A:434 , HOH A:4854BINDING SITE FOR RESIDUE GOL A 3033
38EC2SOFTWAREARG B:213 , ARG B:410 , PHE B:432 , GLU B:433 , ASP B:434 , HOH B:4878BINDING SITE FOR RESIDUE GOL B 3034
39EC3SOFTWAREARG A:447 , GLU A:551 , HIS A:555 , ARG A:558 , HOH A:4134BINDING SITE FOR RESIDUE GOL A 3035
40EC4SOFTWAREARG B:447 , HIS B:555 , HOH B:4092 , HOH B:4105BINDING SITE FOR RESIDUE GOL B 3036
41EC5SOFTWAREPHE B:631 , ILE B:634 , LEU B:635 , PHE B:701 , LYS B:704 , ALA B:705 , ASP B:708BINDING SITE FOR RESIDUE GOL B 3037
42EC6SOFTWAREPRO A:353 , THR B:342 , LYS B:385 , HOH B:4489 , HOH B:4514BINDING SITE FOR RESIDUE GOL B 3038
43EC7SOFTWAREGLU A:933 , LYS A:953 , TYR A:954 , GOL A:3043 , CA A:4004 , GLU B:946 , HOH B:4392BINDING SITE FOR RESIDUE GOL A 3039
44EC8SOFTWAREVAL A:423 , PRO A:424 , HIS A:522 , GLU A:523 , CA A:4001 , HOH A:4506 , HOH A:4507BINDING SITE FOR RESIDUE GOL A 3040
45EC9SOFTWAREGLU A:946 , HOH A:4569 , GLU B:933 , LYS B:953 , TYR B:954 , MET B:955 , CA B:4002 , HOH B:4714 , HOH B:4802 , HOH B:4874BINDING SITE FOR RESIDUE GOL B 3041
46FC1SOFTWAREVAL B:423 , PRO B:424 , HIS B:522 , GLU B:523 , CA B:4003 , HOH B:4160 , HOH B:4701BINDING SITE FOR RESIDUE GOL B 3042
47FC2SOFTWAREVAL A:952 , LYS A:953 , TYR A:954 , GOL A:3039 , CA A:4004 , HOH A:4580 , HOH A:4812 , GLU B:946 , HOH B:4704BINDING SITE FOR RESIDUE GOL A 3043

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2OKX)

(-) Cis Peptide Bonds  (12, 12)

Asymmetric Unit
No.Residues
1Asp A:47 -Ser A:48
2Gly A:62 -Pro A:63
3Ala A:185 -Pro A:186
4Gln A:285 -Pro A:286
5Gly A:341 -Thr A:342
6Val A:618 -Pro A:619
7Asp B:47 -Ser B:48
8Gly B:62 -Pro B:63
9Ala B:185 -Pro B:186
10Gln B:285 -Pro B:286
11Gly B:341 -Thr B:342
12Val B:618 -Pro B:619

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2OKX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2OKX)

(-) Exons   (0, 0)

(no "Exon" information available for 2OKX)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:954
 aligned with Q93RE7_BACGL | Q93RE7 from UniProtKB/TrEMBL  Length:956

    Alignment length:954
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732       742       752       762       772       782       792       802       812       822       832       842       852       862       872       882       892       902       912       922       932       942       952    
         Q93RE7_BACGL     3 GRNWNASWIWGGQEESPRNEWRCFRGSFDAPASVEGPAMLHITADSRYVLFVNGEQVGRGPVRSWPKEQFYDSYDIGGQLRPGVRNTIAVLVLHFGVSNFYYLRGRGGLIAEIEADGRTLAATDAAWRTERLGGQRSNSPRMACQQGFGEVIDARELAEDWALPAFDDGGWAQARSIGPAGTAPWTSLVPRDIPFLTEEKLYPASIQSLSRVKAPKYAAALDLRNQMVPESVNHANPVSYCGYVATILTLETSGVVTLGFPTGVRGSGVWVDGVLQTEWTGVQPERYYSLNLAAGEHLVLVDITSSDHGGSSHFAIDSEAAFTLRSPAGDNGVPLATIGTFDQSEYIDHRPGRRMQTDHPDYRALPEAAPTAAALEAFASWVKPFEPSLYTEENVFGSNVWRTLAERRAVPRSVLNAILPVPEPGVLPVFEDGDCELVIDLGAERSGFIGFELEAPAGTIIDAYGVEYMREGYTQHTYGLDNTFRYICREGRQSYVSPVRRGFRYLFLTVRGNSAPVKLHEIYIRQSTYPVAEQGSFRCSDALLNATWEISRHTTRLCMEDTFVDCPSYEQVFWVGDSRNEALVNYYVFGETEIVERCLNLVPGSADETPLYLDQVPSAWSSVIPNWTFFWILACREYAAHTGNEAFAARIWPAVKHTLTHYLEHIDDSGLLNMAGWNLLDWAPIDQPNEGIVTHQNLFLVKALRDSRALAAAAGATEEADAFAARADLLAETINAVLWDEEKRAYIDCIHADGRRSDVYSMQTQVVAYLCGVAQGEREAVIEGYLSSPPPAFVQIGSPFMSFFYYEALEKAGRQTLMLDDIRRNYGQMLRYDATTCWEMYPNFAENRSNPDMLTRSHCHAWSAAPGYFLGSSILGVKRGADGWRTVDIAPQPCDLTWAEGVVPLPQGGHIAVSWEFVSAGKLKLRIEAPEDIEVNVTLPEGIEGEVTQVKYMS 956
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeee.........eeeeeeeeee.........eeeeeee.eeeeee..eeeeee.......eeeeeeee.........eeeeeeeeee.............eeeeeeee..eeeee.....eeee...................eee.hhh..............ee.eeeee.......eeee........eee...eeeeeeeee...eeeeehhhhhhhhhhhhh...eee..eeeeeeee...eeeeeee........eee..ee..........eeeeeee..eeeeeeee..eee....eeeeeee...eeee..........eee....eee.............hhhhhhhhhhh...hhhhhhhh.eee.hhh.ee..hhhhhhhh..eeeee..hhhhhhhhh.....ee.......eeeeeeeeeeeeeeeeeeeeee....eeeeeee.eee..eee.......eeeee...eeeeee....eeeeeeeeeee......eeeeeeeee.........eeee.hhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........................eehhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhee....ee..ee..........hhhhhhhhhhh...hhhhhhhhhhhhhh.........hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh...........................hhhhhhhhhhhhhh...eee.hhhh.eeee........eeeeeee.....eeeeeeeeee..eeeeeeeee...eeee......eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2okx A   3 GRNWNASWIWGGQEESPRNEWRCFRGSFDAPASVEGPAMLHITADSRYVLFVNGEQVGRGPVRSWPKEQFYDSYDIGGQLRPGVRNTIAVLVLHFGVSNFYYLRGRGGLIAEIEADGRTLAATDAAWRTERLGGQRSNSPRMACQQGFGEVIDARELAEDWALPAFDDGGWAQARSIGPAGTAPWTSLVPRDIPFLTEEKLYPASIQSLSRVKAPKYAAALDLRNQMVPESVNHANPVSYCGYVATILTLETSGVVTLGFPTGVRGSGVWVDGVLQTEWTGVQPERYYSLNLAAGEHLVLVDITSSDHGGSSHFAIDSEAAFTLRSPAGDNGVPLATIGTFDQSEYIDHRPGRRMQTDHPDYRALPEAAPTAAALEAFASWVKPFEPSLYTEENVFGSNVWRTLAERRAVPRSVLNAILPVPEPGVLPVFEDGDCELVIDLGAERSGFIGFELEAPAGTIIDAYGVEYMREGYTQHTYGLDNTFRYICREGRQSYVSPVRRGFRYLFLTVRGNSAPVKLHEIYIRQSTYPVAEQGSFRCSDALLNATWEISRHTTRLCMEDTFVDCPSYEQVFWVGDSRNEALVNYYVFGETEIVERCLNLVPGSADETPLYLDQVPSAWSSVIPNWTFFWILACREYAAHTGNEAFAARIWPAVKHTLTHYLEHIDDSGLLNMAGWNLLDWAPIDQPNEGIVTHQNLFLVKALRDSRALAAAAGATEEADAFAARADLLAETINAVLWDEEKRAYIDCIHADGRRSDVYSMQTQVVAYLCGVAQGEREAVIEGYLSSPPPAFVQIGSPFMSFFYYEALEKAGRQTLMLDDIRRNYGQMLRYDATTCWEMYPNFAENRSNPDMLTRSHCHAWSAAPGYFLGSSILGVKRGADGWRTVDIAPQPCDLTWAEGVVPLPQGGHIAVSWEFVSAGKLKLRIEAPEDIEVNVTLPEGIEGEVTQVKYMS 956
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732       742       752       762       772       782       792       802       812       822       832       842       852       862       872       882       892       902       912       922       932       942       952    


Chain B from PDB  Type:PROTEIN  Length:954
 aligned with Q93RE7_BACGL | Q93RE7 from UniProtKB/TrEMBL  Length:956

    Alignment length:954
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732       742       752       762       772       782       792       802       812       822       832       842       852       862       872       882       892       902       912       922       932       942       952    
         Q93RE7_BACGL     3 GRNWNASWIWGGQEESPRNEWRCFRGSFDAPASVEGPAMLHITADSRYVLFVNGEQVGRGPVRSWPKEQFYDSYDIGGQLRPGVRNTIAVLVLHFGVSNFYYLRGRGGLIAEIEADGRTLAATDAAWRTERLGGQRSNSPRMACQQGFGEVIDARELAEDWALPAFDDGGWAQARSIGPAGTAPWTSLVPRDIPFLTEEKLYPASIQSLSRVKAPKYAAALDLRNQMVPESVNHANPVSYCGYVATILTLETSGVVTLGFPTGVRGSGVWVDGVLQTEWTGVQPERYYSLNLAAGEHLVLVDITSSDHGGSSHFAIDSEAAFTLRSPAGDNGVPLATIGTFDQSEYIDHRPGRRMQTDHPDYRALPEAAPTAAALEAFASWVKPFEPSLYTEENVFGSNVWRTLAERRAVPRSVLNAILPVPEPGVLPVFEDGDCELVIDLGAERSGFIGFELEAPAGTIIDAYGVEYMREGYTQHTYGLDNTFRYICREGRQSYVSPVRRGFRYLFLTVRGNSAPVKLHEIYIRQSTYPVAEQGSFRCSDALLNATWEISRHTTRLCMEDTFVDCPSYEQVFWVGDSRNEALVNYYVFGETEIVERCLNLVPGSADETPLYLDQVPSAWSSVIPNWTFFWILACREYAAHTGNEAFAARIWPAVKHTLTHYLEHIDDSGLLNMAGWNLLDWAPIDQPNEGIVTHQNLFLVKALRDSRALAAAAGATEEADAFAARADLLAETINAVLWDEEKRAYIDCIHADGRRSDVYSMQTQVVAYLCGVAQGEREAVIEGYLSSPPPAFVQIGSPFMSFFYYEALEKAGRQTLMLDDIRRNYGQMLRYDATTCWEMYPNFAENRSNPDMLTRSHCHAWSAAPGYFLGSSILGVKRGADGWRTVDIAPQPCDLTWAEGVVPLPQGGHIAVSWEFVSAGKLKLRIEAPEDIEVNVTLPEGIEGEVTQVKYMS 956
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) --------------------------------Bac_rhamnosid_N-2okxB03 B:35-210                                                                                                                                                ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Bac_rhamnosid-2okxB01 B:431-941                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                --------------- Pfam domains (1)
           Pfam domains (2) --------------------------------Bac_rhamnosid_N-2okxB04 B:35-210                                                                                                                                                ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Bac_rhamnosid-2okxB02 B:431-941                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                --------------- Pfam domains (2)
         Sec.struct. author ......eeee.........eeeeeeeeee.........eeeeeee.eeeeee..eeeeee.......eeeeeeee.........eeeeeeeeee.............eeeeeeee..eeeee.....eeee...................eee.hhh..............ee.eeeee.......eeee........eee...eeeeeeeee...eeeeehhhhhhhhhhhhh...eee..eeeeeeee...eeeeeee........eee..ee..........eeeeeee..eeeeeeee..eee....eeeeeee...eeee..........eee....eee.............hhhhhhhhhhh.hhhhhhhhhh.eee.hhh.ee..hhhhhhhh..eeeee..hhhhhhhhh.....ee.......eeeeeeeeeeeeeeeeeeeeee....eeeeeee..ee..ee........eeeee...eeeeee....eeeeeeeeeee......eeeeeeeee.........eeee.hhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........ee..............eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee....ee..eee.........hhhhhhhhhhh....hhhhhhhhhhhhh.........hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh...........................hhhhhhhhhhhhhh...eee.hhhh.eeee........eeeeeee.....eeeeeeeeee..eeeeeeeee...eeee......eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2okx B   3 GRNWNASWIWGGQEESPRNEWRCFRGSFDAPASVEGPAMLHITADSRYVLFVNGEQVGRGPVRSWPKEQFYDSYDIGGQLRPGVRNTIAVLVLHFGVSNFYYLRGRGGLIAEIEADGRTLAATDAAWRTERLGGQRSNSPRMACQQGFGEVIDARELAEDWALPAFDDGGWAQARSIGPAGTAPWTSLVPRDIPFLTEEKLYPASIQSLSRVKAPKYAAALDLRNQMVPESVNHANPVSYCGYVATILTLETSGVVTLGFPTGVRGSGVWVDGVLQTEWTGVQPERYYSLNLAAGEHLVLVDITSSDHGGSSHFAIDSEAAFTLRSPAGDNGVPLATIGTFDQSEYIDHRPGRRMQTDHPDYRALPEAAPTAAALEAFASWVKPFEPSLYTEENVFGSNVWRTLAERRAVPRSVLNAILPVPEPGVLPVFEDGDCELVIDLGAERSGFIGFELEAPAGTIIDAYGVEYMREGYTQHTYGLDNTFRYICREGRQSYVSPVRRGFRYLFLTVRGNSAPVKLHEIYIRQSTYPVAEQGSFRCSDALLNATWEISRHTTRLCMEDTFVDCPSYEQVFWVGDSRNEALVNYYVFGETEIVERCLNLVPGSADETPLYLDQVPSAWSSVIPNWTFFWILACREYAAHTGNEAFAARIWPAVKHTLTHYLEHIDDSGLLNMAGWNLLDWAPIDQPNEGIVTHQNLFLVKALRDSRALAAAAGATEEADAFAARADLLAETINAVLWDEEKRAYIDCIHADGRRSDVYSMQTQVVAYLCGVAQGEREAVIEGYLSSPPPAFVQIGSPFMSFFYYEALEKAGRQTLMLDDIRRNYGQMLRYDATTCWEMYPNFAENRSNPDMLTRSHCHAWSAAPGYFLGSSILGVKRGADGWRTVDIAPQPCDLTWAEGVVPLPQGGHIAVSWEFVSAGKLKLRIEAPEDIEVNVTLPEGIEGEVTQVKYMS 956
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732       742       752       762       772       782       792       802       812       822       832       842       852       862       872       882       892       902       912       922       932       942       952
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(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2OKX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2OKX)

(-) Pfam Domains  (2, 4)

Asymmetric Unit
(-)
Clan: 6_Hairpin (120)
(-)
Clan: GBD (153)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q93RE7_BACGL | Q93RE7)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.

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  2okx
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  Q93RE7_BACGL | Q93RE7
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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