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| Title | CRYSTAL STRUCTURE OF GH78 FAMILY RHAMNOSIDASE OF BACILLUS SP 1.9 A | |
| Keywords | ALPHA BARREL, RHAMNOSIDASE, GLYCOSIDE HYDROLASE FAMILY 78, I HYDROLASE | |
| Experiment | X-ray diffraction | |
| Number of Models | 1 |
| Database | ID code | Status | Coordinate files | ||
| Header | Asymmetric unit | Biological unit | |||
| PDB | 2OKX | released | available | available | Quaternary Structure Server |
| Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
|---|---|---|---|---|---|---|
| 1 | Protein | RHAMNOSIDASE B | A | 954 | 7477 | 0 |
| 2 | Protein | RHAMNOSIDASE B | B | 954 | 7477 | 0 |
| 3 | Ligand | RHAMNOSIDASE B | A | 23 | 0 | 128 |
| 4 | Ligand | RHAMNOSIDASE B | B | 24 | 0 | 134 |
| 5 | Water | 1755 | 0 | 1755 | ||
| total | 3710 | 14954 | 2017 |
| Unit 1 | GLY3 ARG4 ASN5 TRP6 ASN7 ALA8 SER9 TRP10 ILE11 TRP12 GLY13 GLY14 GLN15 GLU16 GLU17 SER18 PRO19 ARG20 ASN21 GLU22 TRP23 ARG24 CYS25 PHE26 ARG27 GLY28 SER29 PHE30 ASP31 ALA32 PRO33 ALA34 SER35 VAL36 GLU37 GLY38 PRO39 ALA40 MET41 LEU42 HIS43 ILE44 THR45 ALA46 ASP47 SER48 ARG49 TYR50 VAL51 LEU52 PHE53 VAL54 ASN55 GLY56 GLU57 GLN58 VAL59 GLY60 ARG61 GLY62 PRO63 VAL64 ARG65 SER66 TRP67 PRO68 LYS69 GLU70 GLN71 PHE72 TYR73 ASP74 SER75 TYR76 ASP77 ILE78 GLY79 GLY80 GLN81 LEU82 ARG83 PRO84 GLY85 VAL86 ARG87 ASN88 THR89 ILE90 ALA91 VAL92 LEU93 VAL94 LEU95 HIS96 PHE97 GLY98 VAL99 SER100 ASN101 PHE102 TYR103 TYR104 LEU105 ARG106 GLY107 ARG108 GLY109 GLY110 LEU111 ILE112 ALA113 GLU114 ILE115 GLU116 ALA117 ASP118 GLY119 ARG120 THR121 LEU122 ALA123 ALA124 THR125 ASP126 ALA127 ALA128 TRP129 ARG130 THR131 GLU132 ARG133 LEU134 GLY135 GLY136 GLN137 ARG138 SER139 ASN140 SER141 PRO142 ARG143 MET144 ALA145 CYS146 GLN147 GLN148 GLY149 PHE150 GLY151 GLU152 VAL153 ILE154 ASP155 ALA156 ARG157 GLU158 LEU159 ALA160 GLU161 ASP162 TRP163 ALA164 LEU165 PRO166 ALA167 PHE168 ASP169 ASP170 GLY171 GLY172 TRP173 ALA174 GLN175 ALA176 ARG177 SER178 ILE179 GLY180 PRO181 ALA182 GLY183 THR184 ALA185 PRO186 TRP187 THR188 SER189 LEU190 VAL191 PRO192 ARG193 ASP194 ILE195 PRO196 PHE197 LEU198 THR199 GLU200 GLU201 LYS202 LEU203 TYR204 PRO205 ALA206 SER207 ILE208 GLN209 SER210 LEU211 SER212 ARG213 VAL214 LYS215 ALA216 PRO217 LYS218 TYR219 ALA220 ALA221 ALA222 LEU223 ASP224 LEU225 ARG226 ASN227 GLN228 MET229 VAL230 PRO231 GLU232 SER233 VAL234 ASN235 HIS236 ALA237 ASN238 PRO239 VAL240 SER241 TYR242 CYS243 GLY244 TYR245 VAL246 ALA247 THR248 ILE249 LEU250 THR251 LEU252 GLU253 THR254 SER255 GLY256 VAL257 VAL258 THR259 LEU260 GLY261 PHE262 PRO263 THR264 GLY265 VAL266 ARG267 GLY268 SER269 GLY270 VAL271 TRP272 VAL273 ASP274 GLY275 VAL276 LEU277 GLN278 THR279 GLU280 TRP281 THR282 GLY283 VAL284 GLN285 PRO286 GLU287 ARG288 TYR289 TYR290 SER291 LEU292 ASN293 LEU294 ALA295 ALA296 GLY297 GLU298 HIS299 LEU300 VAL301 LEU302 VAL303 ASP304 ILE305 THR306 SER307 SER308 ASP309 HIS310 GLY311 GLY312 SER313 SER314 HIS315 PHE316 ALA317 ILE318 ASP319 SER320 GLU321 ALA322 ALA323 PHE324 THR325 LEU326 ARG327 SER328 PRO329 ALA330 GLY331 ASP332 ASN333 GLY334 VAL335 PRO336 LEU337 ALA338 THR339 ILE340 GLY341 THR342 PHE343 ASP344 GLN345 SER346 GLU347 TYR348 ILE349 ASP350 HIS351 ARG352 PRO353 GLY354 ARG355 ARG356 MET357 GLN358 THR359 ASP360 HIS361 PRO362 ASP363 TYR364 ARG365 ALA366 LEU367 PRO368 GLU369 ALA370 ALA371 PRO372 THR373 ALA374 ALA375 ALA376 LEU377 GLU378 ALA379 PHE380 ALA381 SER382 TRP383 VAL384 LYS385 PRO386 PHE387 GLU388 PRO389 SER390 LEU391 TYR392 THR393 GLU394 GLU395 ASN396 VAL397 PHE398 GLY399 SER400 ASN401 VAL402 TRP403 ARG404 THR405 LEU406 ALA407 GLU408 ARG409 ARG410 ALA411 VAL412 PRO413 ARG414 SER415 VAL416 LEU417 ASN418 ALA419 ILE420 LEU421 PRO422 VAL423 PRO424 GLU425 PRO426 GLY427 VAL428 LEU429 PRO430 VAL431 PHE432 GLU433 ASP434 GLY435 ASP436 CYS437 GLU438 LEU439 VAL440 ILE441 ASP442 LEU443 GLY444 ALA445 GLU446 ARG447 SER448 GLY449 PHE450 ILE451 GLY452 PHE453 GLU454 LEU455 GLU456 ALA457 PRO458 ALA459 GLY460 THR461 ILE462 ILE463 ASP464 ALA465 TYR466 GLY467 VAL468 GLU469 TYR470 MET471 ARG472 GLU473 GLY474 TYR475 THR476 GLN477 HIS478 THR479 TYR480 GLY481 LEU482 ASP483 ASN484 THR485 PHE486 ARG487 TYR488 ILE489 CYS490 ARG491 GLU492 GLY493 ARG494 GLN495 SER496 TYR497 VAL498 SER499 PRO500 VAL501 ARG502 ARG503 GLY504 PHE505 ARG506 TYR507 LEU508 PHE509 LEU510 THR511 VAL512 ARG513 GLY514 ASN515 SER516 ALA517 PRO518 VAL519 LYS520 LEU521 HIS522 GLU523 ILE524 TYR525 ILE526 ARG527 GLN528 SER529 THR530 TYR531 PRO532 VAL533 ALA534 GLU535 GLN536 GLY537 SER538 PHE539 ARG540 CYS541 SER542 ASP543 ALA544 LEU545 LEU546 ASN547 ALA548 THR549 TRP550 GLU551 ILE552 SER553 ARG554 HIS555 THR556 THR557 ARG558 LEU559 CYS560 MET561 GLU562 ASP563 THR564 PHE565 VAL566 ASP567 CYS568 PRO569 SER570 TYR571 GLU572 GLN573 VAL574 PHE575 TRP576 VAL577 GLY578 ASP579 SER580 ARG581 ASN582 GLU583 ALA584 LEU585 VAL586 ASN587 TYR588 TYR589 VAL590 PHE591 GLY592 GLU593 THR594 GLU595 ILE596 VAL597 GLU598 ARG599 CYS600 LEU601 ASN602 LEU603 VAL604 PRO605 GLY606 SER607 ALA608 ASP609 GLU610 THR611 PRO612 LEU613 TYR614 LEU615 ASP616 GLN617 VAL618 PRO619 SER620 ALA621 TRP622 SER623 SER624 VAL625 ILE626 PRO627 ASN628 TRP629 THR630 PHE631 PHE632 TRP633 ILE634 LEU635 ALA636 CYS637 ARG638 GLU639 TYR640 ALA641 ALA642 HIS643 THR644 GLY645 ASN646 GLU647 ALA648 PHE649 ALA650 ALA651 ARG652 ILE653 TRP654 PRO655 ALA656 VAL657 LYS658 HIS659 THR660 LEU661 THR662 HIS663 TYR664 LEU665 GLU666 HIS667 ILE668 ASP669 ASP670 SER671 GLY672 LEU673 LEU674 ASN675 MET676 ALA677 GLY678 TRP679 ASN680 LEU681 LEU682 ASP683 TRP684 ALA685 PRO686 ILE687 ASP688 GLN689 PRO690 ASN691 GLU692 GLY693 ILE694 VAL695 THR696 HIS697 GLN698 ASN699 LEU700 PHE701 LEU702 VAL703 LYS704 ALA705 LEU706 ARG707 ASP708 SER709 ARG710 ALA711 LEU712 ALA713 ALA714 ALA715 ALA716 GLY717 ALA718 THR719 GLU720 GLU721 ALA722 ASP723 ALA724 PHE725 ALA726 ALA727 ARG728 ALA729 ASP730 LEU731 LEU732 ALA733 GLU734 THR735 ILE736 ASN737 ALA738 VAL739 LEU740 TRP741 ASP742 GLU743 GLU744 LYS745 ARG746 ALA747 TYR748 ILE749 ASP750 CYS751 ILE752 HIS753 ALA754 ASP755 GLY756 ARG757 ARG758 SER759 ASP760 VAL761 TYR762 SER763 MET764 GLN765 THR766 GLN767 VAL768 VAL769 ALA770 TYR771 LEU772 CYS773 GLY774 VAL775 ALA776 GLN777 GLY778 GLU779 ARG780 GLU781 ALA782 VAL783 ILE784 GLU785 GLY786 TYR787 LEU788 SER789 SER790 PRO791 PRO792 PRO793 ALA794 PHE795 VAL796 GLN797 ILE798 GLY799 SER800 PRO801 PHE802 MET803 SER804 PHE805 PHE806 TYR807 TYR808 GLU809 ALA810 LEU811 GLU812 LYS813 ALA814 GLY815 ARG816 GLN817 THR818 LEU819 MET820 LEU821 ASP822 ASP823 ILE824 ARG825 ARG826 ASN827 TYR828 GLY829 GLN830 MET831 LEU832 ARG833 TYR834 ASP835 ALA836 THR837 THR838 CYS839 TRP840 GLU841 MET842 TYR843 PRO844 ASN845 PHE846 ALA847 GLU848 ASN849 ARG850 SER851 ASN852 PRO853 ASP854 MET855 LEU856 THR857 ARG858 SER859 HIS860 CYS861 HIS862 ALA863 TRP864 SER865 ALA866 ALA867 PRO868 GLY869 TYR870 PHE871 LEU872 GLY873 SER874 SER875 ILE876 LEU877 GLY878 VAL879 LYS880 ARG881 GLY882 ALA883 ASP884 GLY885 TRP886 ARG887 THR888 VAL889 ASP890 ILE891 ALA892 PRO893 GLN894 PRO895 CYS896 ASP897 LEU898 THR899 TRP900 ALA901 GLU902 GLY903 VAL904 VAL905 PRO906 LEU907 PRO908 GLN909 GLY910 GLY911 HIS912 ILE913 ALA914 VAL915 SER916 TRP917 GLU918 PHE919 VAL920 SER921 ALA922 GLY923 LYS924 LEU925 LYS926 LEU927 ARG928 ILE929 GLU930 ALA931 PRO932 GLU933 ASP934 ILE935 GLU936 VAL937 ASN938 VAL939 THR940 LEU941 PRO942 GLU943 GLY944 ILE945 GLU946 GLY947 GLU948 VAL949 THR950 GLN951 VAL952 LYS953 TYR954 MET955 SER956 |
| Unit 2 | GLY3 ARG4 ASN5 TRP6 ASN7 ALA8 SER9 TRP10 ILE11 TRP12 GLY13 GLY14 GLN15 GLU16 GLU17 SER18 PRO19 ARG20 ASN21 GLU22 TRP23 ARG24 CYS25 PHE26 ARG27 GLY28 SER29 PHE30 ASP31 ALA32 PRO33 ALA34 SER35 VAL36 GLU37 GLY38 PRO39 ALA40 MET41 LEU42 HIS43 ILE44 THR45 ALA46 ASP47 SER48 ARG49 TYR50 VAL51 LEU52 PHE53 VAL54 ASN55 GLY56 GLU57 GLN58 VAL59 GLY60 ARG61 GLY62 PRO63 VAL64 ARG65 SER66 TRP67 PRO68 LYS69 GLU70 GLN71 PHE72 TYR73 ASP74 SER75 TYR76 ASP77 ILE78 GLY79 GLY80 GLN81 LEU82 ARG83 PRO84 GLY85 VAL86 ARG87 ASN88 THR89 ILE90 ALA91 VAL92 LEU93 VAL94 LEU95 HIS96 PHE97 GLY98 VAL99 SER100 ASN101 PHE102 TYR103 TYR104 LEU105 ARG106 GLY107 ARG108 GLY109 GLY110 LEU111 ILE112 ALA113 GLU114 ILE115 GLU116 ALA117 ASP118 GLY119 ARG120 THR121 LEU122 ALA123 ALA124 THR125 ASP126 ALA127 ALA128 TRP129 ARG130 THR131 GLU132 ARG133 LEU134 GLY135 GLY136 GLN137 ARG138 SER139 ASN140 SER141 PRO142 ARG143 MET144 ALA145 CYS146 GLN147 GLN148 GLY149 PHE150 GLY151 GLU152 VAL153 ILE154 ASP155 ALA156 ARG157 GLU158 LEU159 ALA160 GLU161 ASP162 TRP163 ALA164 LEU165 PRO166 ALA167 PHE168 ASP169 ASP170 GLY171 GLY172 TRP173 ALA174 GLN175 ALA176 ARG177 SER178 ILE179 GLY180 PRO181 ALA182 GLY183 THR184 ALA185 PRO186 TRP187 THR188 SER189 LEU190 VAL191 PRO192 ARG193 ASP194 ILE195 PRO196 PHE197 LEU198 THR199 GLU200 GLU201 LYS202 LEU203 TYR204 PRO205 ALA206 SER207 ILE208 GLN209 SER210 LEU211 SER212 ARG213 VAL214 LYS215 ALA216 PRO217 LYS218 TYR219 ALA220 ALA221 ALA222 LEU223 ASP224 LEU225 ARG226 ASN227 GLN228 MET229 VAL230 PRO231 GLU232 SER233 VAL234 ASN235 HIS236 ALA237 ASN238 PRO239 VAL240 SER241 TYR242 CYS243 GLY244 TYR245 VAL246 ALA247 THR248 ILE249 LEU250 THR251 LEU252 GLU253 THR254 SER255 GLY256 VAL257 VAL258 THR259 LEU260 GLY261 PHE262 PRO263 THR264 GLY265 VAL266 ARG267 GLY268 SER269 GLY270 VAL271 TRP272 VAL273 ASP274 GLY275 VAL276 LEU277 GLN278 THR279 GLU280 TRP281 THR282 GLY283 VAL284 GLN285 PRO286 GLU287 ARG288 TYR289 TYR290 SER291 LEU292 ASN293 LEU294 ALA295 ALA296 GLY297 GLU298 HIS299 LEU300 VAL301 LEU302 VAL303 ASP304 ILE305 THR306 SER307 SER308 ASP309 HIS310 GLY311 GLY312 SER313 SER314 HIS315 PHE316 ALA317 ILE318 ASP319 SER320 GLU321 ALA322 ALA323 PHE324 THR325 LEU326 ARG327 SER328 PRO329 ALA330 GLY331 ASP332 ASN333 GLY334 VAL335 PRO336 LEU337 ALA338 THR339 ILE340 GLY341 THR342 PHE343 ASP344 GLN345 SER346 GLU347 TYR348 ILE349 ASP350 HIS351 ARG352 PRO353 GLY354 ARG355 ARG356 MET357 GLN358 THR359 ASP360 HIS361 PRO362 ASP363 TYR364 ARG365 ALA366 LEU367 PRO368 GLU369 ALA370 ALA371 PRO372 THR373 ALA374 ALA375 ALA376 LEU377 GLU378 ALA379 PHE380 ALA381 SER382 TRP383 VAL384 LYS385 PRO386 PHE387 GLU388 PRO389 SER390 LEU391 TYR392 THR393 GLU394 GLU395 ASN396 VAL397 PHE398 GLY399 SER400 ASN401 VAL402 TRP403 ARG404 THR405 LEU406 ALA407 GLU408 ARG409 ARG410 ALA411 VAL412 PRO413 ARG414 SER415 VAL416 LEU417 ASN418 ALA419 ILE420 LEU421 PRO422 VAL423 PRO424 GLU425 PRO426 GLY427 VAL428 LEU429 PRO430 VAL431 PHE432 GLU433 ASP434 GLY435 ASP436 CYS437 GLU438 LEU439 VAL440 ILE441 ASP442 LEU443 GLY444 ALA445 GLU446 ARG447 SER448 GLY449 PHE450 ILE451 GLY452 PHE453 GLU454 LEU455 GLU456 ALA457 PRO458 ALA459 GLY460 THR461 ILE462 ILE463 ASP464 ALA465 TYR466 GLY467 VAL468 GLU469 TYR470 MET471 ARG472 GLU473 GLY474 TYR475 THR476 GLN477 HIS478 THR479 TYR480 GLY481 LEU482 ASP483 ASN484 THR485 PHE486 ARG487 TYR488 ILE489 CYS490 ARG491 GLU492 GLY493 ARG494 GLN495 SER496 TYR497 VAL498 SER499 PRO500 VAL501 ARG502 ARG503 GLY504 PHE505 ARG506 TYR507 LEU508 PHE509 LEU510 THR511 VAL512 ARG513 GLY514 ASN515 SER516 ALA517 PRO518 VAL519 LYS520 LEU521 HIS522 GLU523 ILE524 TYR525 ILE526 ARG527 GLN528 SER529 THR530 TYR531 PRO532 VAL533 ALA534 GLU535 GLN536 GLY537 SER538 PHE539 ARG540 CYS541 SER542 ASP543 ALA544 LEU545 LEU546 ASN547 ALA548 THR549 TRP550 GLU551 ILE552 SER553 ARG554 HIS555 THR556 THR557 ARG558 LEU559 CYS560 MET561 GLU562 ASP563 THR564 PHE565 VAL566 ASP567 CYS568 PRO569 SER570 TYR571 GLU572 GLN573 VAL574 PHE575 TRP576 VAL577 GLY578 ASP579 SER580 ARG581 ASN582 GLU583 ALA584 LEU585 VAL586 ASN587 TYR588 TYR589 VAL590 PHE591 GLY592 GLU593 THR594 GLU595 ILE596 VAL597 GLU598 ARG599 CYS600 LEU601 ASN602 LEU603 VAL604 PRO605 GLY606 SER607 ALA608 ASP609 GLU610 THR611 PRO612 LEU613 TYR614 LEU615 ASP616 GLN617 VAL618 PRO619 SER620 ALA621 TRP622 SER623 SER624 VAL625 ILE626 PRO627 ASN628 TRP629 THR630 PHE631 PHE632 TRP633 ILE634 LEU635 ALA636 CYS637 ARG638 GLU639 TYR640 ALA641 ALA642 HIS643 THR644 GLY645 ASN646 GLU647 ALA648 PHE649 ALA650 ALA651 ARG652 ILE653 TRP654 PRO655 ALA656 VAL657 LYS658 HIS659 THR660 LEU661 THR662 HIS663 TYR664 LEU665 GLU666 HIS667 ILE668 ASP669 ASP670 SER671 GLY672 LEU673 LEU674 ASN675 MET676 ALA677 GLY678 TRP679 ASN680 LEU681 LEU682 ASP683 TRP684 ALA685 PRO686 ILE687 ASP688 GLN689 PRO690 ASN691 GLU692 GLY693 ILE694 VAL695 THR696 HIS697 GLN698 ASN699 LEU700 PHE701 LEU702 VAL703 LYS704 ALA705 LEU706 ARG707 ASP708 SER709 ARG710 ALA711 LEU712 ALA713 ALA714 ALA715 ALA716 GLY717 ALA718 THR719 GLU720 GLU721 ALA722 ASP723 ALA724 PHE725 ALA726 ALA727 ARG728 ALA729 ASP730 LEU731 LEU732 ALA733 GLU734 THR735 ILE736 ASN737 ALA738 VAL739 LEU740 TRP741 ASP742 GLU743 GLU744 LYS745 ARG746 ALA747 TYR748 ILE749 ASP750 CYS751 ILE752 HIS753 ALA754 ASP755 GLY756 ARG757 ARG758 SER759 ASP760 VAL761 TYR762 SER763 MET764 GLN765 THR766 GLN767 VAL768 VAL769 ALA770 TYR771 LEU772 CYS773 GLY774 VAL775 ALA776 GLN777 GLY778 GLU779 ARG780 GLU781 ALA782 VAL783 ILE784 GLU785 GLY786 TYR787 LEU788 SER789 SER790 PRO791 PRO792 PRO793 ALA794 PHE795 VAL796 GLN797 ILE798 GLY799 SER800 PRO801 PHE802 MET803 SER804 PHE805 PHE806 TYR807 TYR808 GLU809 ALA810 LEU811 GLU812 LYS813 ALA814 GLY815 ARG816 GLN817 THR818 LEU819 MET820 LEU821 ASP822 ASP823 ILE824 ARG825 ARG826 ASN827 TYR828 GLY829 GLN830 MET831 LEU832 ARG833 TYR834 ASP835 ALA836 THR837 THR838 CYS839 TRP840 GLU841 MET842 TYR843 PRO844 ASN845 PHE846 ALA847 GLU848 ASN849 ARG850 SER851 ASN852 PRO853 ASP854 MET855 LEU856 THR857 ARG858 SER859 HIS860 CYS861 HIS862 ALA863 TRP864 SER865 ALA866 ALA867 PRO868 GLY869 TYR870 PHE871 LEU872 GLY873 SER874 SER875 ILE876 LEU877 GLY878 VAL879 LYS880 ARG881 GLY882 ALA883 ASP884 GLY885 TRP886 ARG887 THR888 VAL889 ASP890 ILE891 ALA892 PRO893 GLN894 PRO895 CYS896 ASP897 LEU898 THR899 TRP900 ALA901 GLU902 GLY903 VAL904 VAL905 PRO906 LEU907 PRO908 GLN909 GLY910 GLY911 HIS912 ILE913 ALA914 VAL915 SER916 TRP917 GLU918 PHE919 VAL920 SER921 ALA922 GLY923 LYS924 LEU925 LYS926 LEU927 ARG928 ILE929 GLU930 ALA931 PRO932 GLU933 ASP934 ILE935 GLU936 VAL937 ASN938 VAL939 THR940 LEU941 PRO942 GLU943 GLY944 ILE945 GLU946 GLY947 GLU948 VAL949 THR950 GLN951 VAL952 LYS953 TYR954 MET955 SER956 |
| Unit 3 | GOL3001 GOL3002 GOL3003 GOL3004 GOL3006 GOL3007 GOL3008 GOL3015 GOL3017 GOL3019 GOL3022 GOL3023 GOL3026 GOL3027 GOL3030 GOL3031 GOL3033 GOL3035 GOL3039 GOL3040 GOL3043 CA4001 CA4004 |
| Unit 4 | GOL3005 GOL3009 GOL3010 GOL3011 GOL3012 GOL3013 GOL3014 GOL3016 GOL3018 GOL3020 GOL3021 GOL3024 GOL3025 GOL3028 GOL3029 GOL3032 GOL3034 GOL3036 GOL3037 GOL3038 GOL3041 GOL3042 CA4002 CA4003 |
| Perl script: | PDBscan.pl (15 Sep 2016) |
| Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |