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2OGX
Asym. Unit
Info
Asym.Unit (98 KB)
Biol.Unit 1 (263 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF THE MOLYBDENUM STORAGE PROTEIN FROM AZOTOBACTER VINELANDII LOADED WITH POLYOXOTUNGSTATES (WSTO)
Authors
:
J. Schemberg, E. Warkentin, U. Ermler
Date
:
09 Jan 07 (Deposition) - 24 Apr 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (3x)
Keywords
:
Open Alpha/Beta Structure, Metal Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Schemberg, K. Schneider, U. Demmer, E. Warkentin, A. Muller, U. Ermler
Towards Biological Supramolecular Chemistry: A Variety Of Pocket-Templated, Individual Metal Oxide Cluster Nucleation In The Cavity Of A Mo/W-Storage Protein.
Angew. Chem. Int. Ed. Engl. V. 46 2408 2007
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Hetero Components
(6, 37)
Info
All Hetero Components
1a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
2a: MAGNESIUM ION (MGa)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
4a: PHOSPHATE ION (PO4a)
4b: PHOSPHATE ION (PO4b)
6a: TRI-TUNGSTEN(VI) OXIDE COMPLEX (WO3a)
5a: TUNGSTEN ION (Wa)
5b: TUNGSTEN ION (Wb)
5c: TUNGSTEN ION (Wc)
5d: TUNGSTEN ION (Wd)
5e: TUNGSTEN ION (We)
5f: TUNGSTEN ION (Wf)
5g: TUNGSTEN ION (Wg)
5h: TUNGSTEN ION (Wh)
5i: TUNGSTEN ION (Wi)
5j: TUNGSTEN ION (Wj)
5k: TUNGSTEN ION (Wk)
5l: TUNGSTEN ION (Wl)
5m: TUNGSTEN ION (Wm)
5n: TUNGSTEN ION (Wn)
5o: TUNGSTEN ION (Wo)
6p: TUNGSTEN ION (Wp)
6q: TUNGSTEN ION (Wq)
6r: TUNGSTEN ION (Wr)
6s: TUNGSTEN ION (Ws)
6t: TUNGSTEN ION (Wt)
6u: TUNGSTEN ION (Wu)
6v: TUNGSTEN ION (Wv)
6w: TUNGSTEN ION (Ww)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ATP
1
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
2
MG
1
Ligand/Ion
MAGNESIUM ION
3
MSE
9
Mod. Amino Acid
SELENOMETHIONINE
4
PO4
2
Ligand/Ion
PHOSPHATE ION
5
W
23
Ligand/Ion
TUNGSTEN ION
6
WO3
1
Ligand/Ion
TRI-TUNGSTEN(VI) OXIDE COMPLEX
[
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Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:190 , PRO A:227 , ATP A:281 , HOH A:3438
BINDING SITE FOR RESIDUE MG A 291
02
AC2
SOFTWARE
LYS B:42 , GLY B:44 , GLY B:45 , GLN B:46 , SER B:47 , LYS B:189 , PO4 B:293 , HOH B:3246
BINDING SITE FOR RESIDUE PO4 B 292
03
AC3
SOFTWARE
ALA B:78 , GLY B:79 , ARG B:168 , THR B:169 , PO4 B:292 , HOH B:3072 , HOH B:3079 , HOH B:3182
BINDING SITE FOR RESIDUE PO4 B 293
04
AC4
SOFTWARE
GLN A:136 , ILE A:139 , HIS A:140 , HOH A:3413 , HOH A:3416
BINDING SITE FOR RESIDUE WO3 A 2008
05
AC5
SOFTWARE
LYS A:45 , GLY A:47 , GLY A:48 , ARG A:49 , GLY A:79 , ALA A:80 , GLY A:81 , ARG A:85 , GLU A:190 , ASN A:191 , VAL A:192 , GLY A:194 , ILE A:195 , TYR A:196 , ALA A:198 , ASP A:199 , PRO A:200 , ASN A:201 , PRO A:225 , LEU A:226 , PRO A:227 , MG A:291 , HOH A:3035 , HOH A:3042 , HOH A:3054 , HOH A:3075 , HOH A:3171 , HOH A:3210 , HOH A:3302 , HOH A:3438 , HOH B:3090
BINDING SITE FOR RESIDUE ATP A 281
06
AC6
SOFTWARE
HIS A:158 , W A:2004 , W B:2002 , W B:2006 , HOH B:3312
BINDING SITE FOR RESIDUE W B 2001
07
AC7
SOFTWARE
W A:2004 , W A:2005 , GLY B:128 , ALA B:129 , W B:2001 , W B:2003 , W B:2006 , W B:2007 , HOH B:3314 , HOH B:3403
BINDING SITE FOR RESIDUE W B 2002
08
AC8
SOFTWARE
W A:2005 , HOH A:3313 , ALA B:129 , W B:2002 , W B:2007 , HOH B:3314
BINDING SITE FOR RESIDUE W B 2003
09
AC9
SOFTWARE
HIS A:157 , W A:2005 , W B:2001 , W B:2002 , HOH B:3367 , HOH B:3403
BINDING SITE FOR RESIDUE W A 2004
10
BC1
SOFTWARE
HIS A:157 , W A:2004 , W B:2002 , W B:2003 , HOH B:3363 , HOH B:3403
BINDING SITE FOR RESIDUE W A 2005
11
BC2
SOFTWARE
GLY B:130 , LEU B:176 , W B:2001 , W B:2002 , W B:2007 , HOH B:3312
BINDING SITE FOR RESIDUE W B 2006
12
BC3
SOFTWARE
HIS A:157 , HOH A:3313 , ALA B:129 , GLY B:130 , W B:2002 , W B:2003 , W B:2006
BINDING SITE FOR RESIDUE W B 2007
13
BC4
SOFTWARE
W B:2010 , W B:2011 , HOH B:3426
BINDING SITE FOR RESIDUE W B 2009
14
BC5
SOFTWARE
SER B:132 , W B:2009 , W B:2011 , W B:2031 , HOH B:3331
BINDING SITE FOR RESIDUE W B 2010
15
BC6
SOFTWARE
W B:2009 , W B:2010
BINDING SITE FOR RESIDUE W B 2011
16
BC7
SOFTWARE
W A:2013 , W A:2015 , W A:2017
BINDING SITE FOR RESIDUE W A 2012
17
BC8
SOFTWARE
GLU A:129 , W A:2012 , W A:2014 , W A:2015 , W A:2016 , W A:2017
BINDING SITE FOR RESIDUE W A 2013
18
BC9
SOFTWARE
GLU A:129 , W A:2013 , W A:2016 , HOH A:3311
BINDING SITE FOR RESIDUE W A 2014
19
CC1
SOFTWARE
ALA A:106 , W A:2012 , W A:2013 , W A:2016 , HOH A:3095 , HOH A:3333
BINDING SITE FOR RESIDUE W A 2015
20
CC2
SOFTWARE
W A:2013 , W A:2014 , W A:2015 , HOH A:3311 , HOH A:3333 , HOH A:3338
BINDING SITE FOR RESIDUE W A 2016
21
CC3
SOFTWARE
GLU A:129 , W A:2012 , W A:2013 , HOH A:3467
BINDING SITE FOR RESIDUE W A 2017
22
CC4
SOFTWARE
ASP B:108 , SER B:147 , W B:2028 , HOH B:3443
BINDING SITE FOR RESIDUE W B 2027
23
CC5
SOFTWARE
ASP B:108 , W B:2027
BINDING SITE FOR RESIDUE W B 2028
24
CC6
SOFTWARE
W A:2026
BINDING SITE FOR RESIDUE W A 2025
25
CC7
SOFTWARE
W A:2025
BINDING SITE FOR RESIDUE W A 2026
26
CC8
SOFTWARE
W B:2030 , W B:2031 , HOH B:3426
BINDING SITE FOR RESIDUE W B 2029
27
CC9
SOFTWARE
W B:2029 , W B:2031
BINDING SITE FOR RESIDUE W B 2030
28
DC1
SOFTWARE
W B:2010 , W B:2029 , W B:2030
BINDING SITE FOR RESIDUE W B 2031
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2ogxa_ (A:)
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Classes
(
)
(
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Folds
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Carbamate kinase-like
(63)
Superfamily
:
Carbamate kinase-like
(63)
Family
:
automated matches
(24)
Protein domain
:
automated matches
(24)
Azotobacter vinelandii [TaxId: 354]
(2)
1a
d2ogxa_
A:
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_AA_kinase_2ogxA01 (A:40-249)
1b: PFAM_AA_kinase_2ogxB01 (B:37-247)
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Clans
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Families
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(
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Organisms
(
)
(
)
Clan
:
no clan defined [family: AA_kinase]
(20)
Family
:
AA_kinase
(20)
Azotobacter vinelandii (strain DJ / ATCC BAA-1303)
(1)
1a
AA_kinase-2ogxA01
A:40-249
1b
AA_kinase-2ogxB01
B:37-247
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Asymmetric Unit 1
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