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(-) Description

Title :  CRYSTAL STRUCTURE OF A DUF1611 FAMILY PROTEIN (AVA_3511) FROM ANABAENA VARIABILIS ATCC 29413 AT 2.30 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  19 Dec 06  (Deposition) - 16 Jan 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Protein Of Unknown Function Duf1611 (Yp_324013. 1) From Anabaena Variabilis Atcc 29413 At 2. 30 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: YP_324013.1
    Mutation: YES
    Organism Scientific: ANABAENA VARIABILIS
    Organism Taxid: 240292
    Strain: ATCC 29413

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 36)

Asymmetric Unit (3, 36)
No.NameCountTypeFull Name
1MSE28Mod. Amino AcidSELENOMETHIONINE
2PG44Ligand/IonTETRAETHYLENE GLYCOL
3PO44Ligand/IonPHOSPHATE ION
Biological Unit 1 (3, 18)
No.NameCountTypeFull Name
1MSE14Mod. Amino AcidSELENOMETHIONINE
2PG42Ligand/IonTETRAETHYLENE GLYCOL
3PO42Ligand/IonPHOSPHATE ION
Biological Unit 2 (3, 18)
No.NameCountTypeFull Name
1MSE14Mod. Amino AcidSELENOMETHIONINE
2PG42Ligand/IonTETRAETHYLENE GLYCOL
3PO42Ligand/IonPHOSPHATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:162 , ILE A:163 , GLY A:164 , LYS A:165 , MSE A:166 , HOH A:362 , HOH A:378 , HOH A:414BINDING SITE FOR RESIDUE PO4 A 349
2AC2SOFTWAREALA C:162 , ILE C:163 , GLY C:164 , LYS C:165 , MSE C:166 , HOH C:358 , HOH C:370 , HOH C:372 , HOH C:394BINDING SITE FOR RESIDUE PO4 C 349
3AC3SOFTWAREALA B:162 , ILE B:163 , GLY B:164 , LYS B:165 , MSE B:166 , HOH B:352 , HOH B:370 , HOH B:372 , HOH B:462BINDING SITE FOR RESIDUE PO4 B 349
4AC4SOFTWAREALA D:162 , ILE D:163 , GLY D:164 , LYS D:165 , MSE D:166 , HOH D:353 , HOH D:365 , HOH D:382BINDING SITE FOR RESIDUE PO4 D 349
5AC5SOFTWAREGLU A:135 , PRO A:136 , ASN A:138 , LEU A:139 , ARG A:206 , PHE A:209 , THR B:111BINDING SITE FOR RESIDUE PG4 A 350
6AC6SOFTWAREGLU C:135 , PRO C:136 , LEU C:139 , ARG C:206BINDING SITE FOR RESIDUE PG4 C 350
7AC7SOFTWARETHR A:111 , GLU B:135 , PRO B:136 , ASN B:138 , LEU B:139 , ARG B:206 , HOH B:533BINDING SITE FOR RESIDUE PG4 B 350
8AC8SOFTWARETHR C:111 , GLU D:135 , PRO D:136 , ALA D:137 , ASN D:138 , LEU D:139 , ARG D:206 , PHE D:209BINDING SITE FOR RESIDUE PG4 D 350

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2OBN)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2OBN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2OBN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2OBN)

(-) Exons   (0, 0)

(no "Exon" information available for 2OBN)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:342
 aligned with Q3M7B8_ANAVT | Q3M7B8 from UniProtKB/TrEMBL  Length:348

    Alignment length:343
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345   
         Q3M7B8_ANAVT     6 NQRVAILLHEGTTGTIGKTGLALLRYSEAPIVAVIDRNCAGQSLREITGIKRDVPIVKSVEAALEYKPQVLVIGIAPKGGGIPDDYWIELKTALQAGMSLVNGLHTPLANIPDLNALLQPGQLIWDVRKEPANLDVASGAARTLPCRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLATGQTGVMLEGDGVALDAVRVDFAAGAVEQMVMRYGKNYDILHIEGQGSLLHPGSTATLPLIRGSQPTQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYETVASGGGAFGTVPVVGIALNTAHLDEYAAKEAIAHTIAETGLPCTDVVRFGADVLLDAVMQN 348
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2obnA01 A:6-134 NAD(P)-binding Rossmann-like Domain                                                                              2obnA02 A:135-348 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.........hhhhhhhhhhh...eeeee.hhhh..hhhhhhh......ee.hhhhhhhhh..eeee.....-...hhhhhhhhhhhhhh..eeee........hhhhhhhh.....eee............hhhhhh..eeeeeee.....hhhhhhhhhhhhhhhh...eeee..hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh....eeee............hhhhhhhhhh..eeeeeee...............hhhhhhhhhhhhhhh........eeeeeee....hhhhhhhhhhhhhhhhh..eehhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2obn A   6 NQRVAILLHEGTTGTIGKTGLALLRYSEAPIVAVIDRNCAGQSLREITGIYRYVPIVKSVEAALEYKPQVLVIGIAPK-GGIPDDYWIELKTALQAGmSLVNGLHTPLANIPDLNALLQPGQLIWDVRKEPANLDVASGAARTLPCRRVLTVGTDmAIGKmSTSLELHWAAKLRGWRSKFLATGQTGVmLEGDGVALDAVRVDFAAGAVEQmVmRYGKNYDILHIEGQGSLLHPGSTATLPLIRGSQPTQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYETVASGGGAFGTVPVVGIALNTAHLDEYAAKEAIAHTIAETGLPCTDVVRFGADVLLDAVmQN 348
                                    15        25        35        45        55        65        75       |85        95       105       115       125       135       145       155     | 165|      175       185       195       205       215 | |   225       235       245       255       265       275       285       295       305       315       325       335       345|  
                                                                                                        83 |               103-MSE                                                   161-MSE|                         194-MSE                217-MSE                                                                                                                          346-MSE
                                                                                                          85                                                                              166-MSE                                              219-MSE                                                                                                                             


Chain B from PDB  Type:PROTEIN  Length:343
 aligned with Q3M7B8_ANAVT | Q3M7B8 from UniProtKB/TrEMBL  Length:348

    Alignment length:343
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345   
         Q3M7B8_ANAVT     6 NQRVAILLHEGTTGTIGKTGLALLRYSEAPIVAVIDRNCAGQSLREITGIKRDVPIVKSVEAALEYKPQVLVIGIAPKGGGIPDDYWIELKTALQAGMSLVNGLHTPLANIPDLNALLQPGQLIWDVRKEPANLDVASGAARTLPCRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLATGQTGVMLEGDGVALDAVRVDFAAGAVEQMVMRYGKNYDILHIEGQGSLLHPGSTATLPLIRGSQPTQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYETVASGGGAFGTVPVVGIALNTAHLDEYAAKEAIAHTIAETGLPCTDVVRFGADVLLDAVMQN 348
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2obnB01 B:6-134 NAD(P)-binding Rossmann-like Domain                                                                              2obnB02 B:135-348 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.........hhhhhhhhhhh...eeeee.......hhhhhhh......ee.hhhhhhhhh..eeee...........hhhhhhhhhhhh..eeee........hhhhhh.......eee............hhhhhh..eeeeeee.....hhhhhhhhhhhhhhhh...eeee..hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh.eeee............hhhhhhhhhh..eeeeeee...............hhhhhhhhhhhhhhhhhh.....eeeeeee....hhhhhhhhhhhhhhhhh..eehhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2obn B   6 NQRVAILLHEGTTGTIGKTGLALLRYSEAPIVAVIDRNCAGQSLREITGIYRYVPIVKSVEAALEYKPQVLVIGIAPKGGGIPDDYWIELKTALQAGmSLVNGLHTPLANIPDLNALLQPGQLIWDVRKEPANLDVASGAARTLPCRRVLTVGTDmAIGKmSTSLELHWAAKLRGWRSKFLATGQTGVmLEGDGVALDAVRVDFAAGAVEQmVmRYGKNYDILHIEGQGSLLHPGSTATLPLIRGSQPTQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYETVASGGGAFGTVPVVGIALNTAHLDEYAAKEAIAHTIAETGLPCTDVVRFGADVLLDAVmQN 348
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155     | 165|      175       185       195       205       215 | |   225       235       245       255       265       275       285       295       305       315       325       335       345|  
                                                                                                                           103-MSE                                                   161-MSE|                         194-MSE                217-MSE                                                                                                                          346-MSE
                                                                                                                                                                                          166-MSE                                              219-MSE                                                                                                                             


Chain C from PDB  Type:PROTEIN  Length:345
 aligned with Q3M7B8_ANAVT | Q3M7B8 from UniProtKB/TrEMBL  Length:348

    Alignment length:346
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342      
         Q3M7B8_ANAVT     3 LPLNQRVAILLHEGTTGTIGKTGLALLRYSEAPIVAVIDRNCAGQSLREITGIKRDVPIVKSVEAALEYKPQVLVIGIAPKGGGIPDDYWIELKTALQAGMSLVNGLHTPLANIPDLNALLQPGQLIWDVRKEPANLDVASGAARTLPCRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLATGQTGVMLEGDGVALDAVRVDFAAGAVEQMVMRYGKNYDILHIEGQGSLLHPGSTATLPLIRGSQPTQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYETVASGGGAFGTVPVVGIALNTAHLDEYAAKEAIAHTIAETGLPCTDVVRFGADVLLDAVMQN 348
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2obnC01 C:3-134 NAD(P)-binding Rossmann-like Domain                                                                                 2obnC02 C:135-348 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee.........hhhhhhhhhhh...eeeee.......hhhhhhh......ee.hhhhhhhhh..eeee....-......hhhhhhhhhhhh..eeee........hhhhhh.......eee............hhhhhh..eeeeeee.....hhhhhhhhhhhhhhhh...eeee..hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh.eeee............hhhhhhhhhh..eeeeeee...............hhhhhhhhhhhhhhhhhh.....eeeeeee....hhhhhhhhhhhhhhhhh..eehhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2obn C   3 LPLNQRVAILLHEGTTGTIGKTGLALLRYSEAPIVAVIDRNCAGQSLREITGIYRYVPIVKSVEAALEYKPQVLVIGIAP-GGGIPDDYWIELKTALQAGmSLVNGLHTPLANIPDLNALLQPGQLIWDVRKEPANLDVASGAARTLPCRRVLTVGTDmAIGKmSTSLELHWAAKLRGWRSKFLATGQTGVmLEGDGVALDAVRVDFAAGAVEQmVmRYGKNYDILHIEGQGSLLHPGSTATLPLIRGSQPTQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYETVASGGGAFGTVPVVGIALNTAHLDEYAAKEAIAHTIAETGLPCTDVVRFGADVLLDAVmQN 348
                                    12        22        32        42        52        62        72        82 |      92       102|      112       122       132       142       152       162   |   172       182       192 |     202       212    | |222       232       242       252       262       272       282       292       302       312       322       332       342   |  
                                                                                                          82 |                103-MSE                                                   161-MSE|                         194-MSE                217-MSE                                                                                                                          346-MSE
                                                                                                            84                                                                               166-MSE                                              219-MSE                                                                                                                             


Chain D from PDB  Type:PROTEIN  Length:346
 aligned with Q3M7B8_ANAVT | Q3M7B8 from UniProtKB/TrEMBL  Length:348

    Alignment length:347
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       
         Q3M7B8_ANAVT     2 RLPLNQRVAILLHEGTTGTIGKTGLALLRYSEAPIVAVIDRNCAGQSLREITGIKRDVPIVKSVEAALEYKPQVLVIGIAPKGGGIPDDYWIELKTALQAGMSLVNGLHTPLANIPDLNALLQPGQLIWDVRKEPANLDVASGAARTLPCRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLATGQTGVMLEGDGVALDAVRVDFAAGAVEQMVMRYGKNYDILHIEGQGSLLHPGSTATLPLIRGSQPTQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYETVASGGGAFGTVPVVGIALNTAHLDEYAAKEAIAHTIAETGLPCTDVVRFGADVLLDAVMQN 348
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2obnD01 D:2-134 NAD(P)-binding Rossmann-like Domain                                                                                  2obnD02 D:135-348 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                 CATH domains
           Pfam domains (1) --------------------------------------DUF1611-2obnD01 D:40-342                                                                                                                                                                                                                                                                                       ------ Pfam domains (1)
           Pfam domains (2) --------------------------------------DUF1611-2obnD02 D:40-342                                                                                                                                                                                                                                                                                       ------ Pfam domains (2)
           Pfam domains (3) --------------------------------------DUF1611-2obnD03 D:40-342                                                                                                                                                                                                                                                                                       ------ Pfam domains (3)
           Pfam domains (4) --------------------------------------DUF1611-2obnD04 D:40-342                                                                                                                                                                                                                                                                                       ------ Pfam domains (4)
         Sec.struct. author .......eeee.........hhhhhhhhhhh...eeeee.......hhhhhhh......ee.hhhhhhhhh..eeee....-......hhhhhhhhhhhh..eeee........hhhhhhhh.....eee............hhhhhh..eeeeeee.....hhhhhhhhhhhhhhhhh..eeee..hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh....eeee............hhhhhhhhhh..eeeeeee...............hhhhhhhhhhhhhhhhhh.....eeeeeee....hhhhhhhhhhhhhhhhh..eehhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2obn D   2 RLPLNQRVAILLHEGTTGTIGKTGLALLRYSEAPIVAVIDRNCAGQSLREITGIYRYVPIVKSVEAALEYKPQVLVIGIAP-GGGIPDDYWIELKTALQAGmSLVNGLHTPLANIPDLNALLQPGQLIWDVRKEPANLDVASGAARTLPCRRVLTVGTDmAIGKmSTSLELHWAAKLRGWRSKFLATGQTGVmLEGDGVALDAVRVDFAAGAVEQmVmRYGKNYDILHIEGQGSLLHPGSTATLPLIRGSQPTQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYETVASGGGAFGTVPVVGIALNTAHLDEYAAKEAIAHTIAETGLPCTDVVRFGADVLLDAVmQN 348
                                    11        21        31        41        51        61        71        81| |     91       101 |     111       121       131       141       151       161    |  171       181       191  |    201       211     | 221       231       241       251       261       271       281       291       301       311       321       331       341    |  
                                                                                                           82 |                103-MSE                                                   161-MSE|                         194-MSE                217-MSE                                                                                                                          346-MSE
                                                                                                             84                                                                               166-MSE                                              219-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (2, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: P-loop_NTPase (1112)

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