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2OBN
Asym. Unit
Info
Asym.Unit (224 KB)
Biol.Unit 1 (110 KB)
Biol.Unit 2 (109 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A DUF1611 FAMILY PROTEIN (AVA_3511) FROM ANABAENA VARIABILIS ATCC 29413 AT 2.30 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
19 Dec 06 (Deposition) - 16 Jan 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Protein Of Unknown Function Duf1611 (Yp_324013. 1) From Anabaena Variabilis Atcc 29413 At 2. 30 A Resolution
To Be Published
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Hetero Components
(3, 36)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1aa: SELENOMETHIONINE (MSEaa)
1ab: SELENOMETHIONINE (MSEab)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
1s: SELENOMETHIONINE (MSEs)
1t: SELENOMETHIONINE (MSEt)
1u: SELENOMETHIONINE (MSEu)
1v: SELENOMETHIONINE (MSEv)
1w: SELENOMETHIONINE (MSEw)
1x: SELENOMETHIONINE (MSEx)
1y: SELENOMETHIONINE (MSEy)
1z: SELENOMETHIONINE (MSEz)
2a: TETRAETHYLENE GLYCOL (PG4a)
2b: TETRAETHYLENE GLYCOL (PG4b)
2c: TETRAETHYLENE GLYCOL (PG4c)
2d: TETRAETHYLENE GLYCOL (PG4d)
3a: PHOSPHATE ION (PO4a)
3b: PHOSPHATE ION (PO4b)
3c: PHOSPHATE ION (PO4c)
3d: PHOSPHATE ION (PO4d)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MSE
28
Mod. Amino Acid
SELENOMETHIONINE
2
PG4
4
Ligand/Ion
TETRAETHYLENE GLYCOL
3
PO4
4
Ligand/Ion
PHOSPHATE ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:162 , ILE A:163 , GLY A:164 , LYS A:165 , MSE A:166 , HOH A:362 , HOH A:378 , HOH A:414
BINDING SITE FOR RESIDUE PO4 A 349
2
AC2
SOFTWARE
ALA C:162 , ILE C:163 , GLY C:164 , LYS C:165 , MSE C:166 , HOH C:358 , HOH C:370 , HOH C:372 , HOH C:394
BINDING SITE FOR RESIDUE PO4 C 349
3
AC3
SOFTWARE
ALA B:162 , ILE B:163 , GLY B:164 , LYS B:165 , MSE B:166 , HOH B:352 , HOH B:370 , HOH B:372 , HOH B:462
BINDING SITE FOR RESIDUE PO4 B 349
4
AC4
SOFTWARE
ALA D:162 , ILE D:163 , GLY D:164 , LYS D:165 , MSE D:166 , HOH D:353 , HOH D:365 , HOH D:382
BINDING SITE FOR RESIDUE PO4 D 349
5
AC5
SOFTWARE
GLU A:135 , PRO A:136 , ASN A:138 , LEU A:139 , ARG A:206 , PHE A:209 , THR B:111
BINDING SITE FOR RESIDUE PG4 A 350
6
AC6
SOFTWARE
GLU C:135 , PRO C:136 , LEU C:139 , ARG C:206
BINDING SITE FOR RESIDUE PG4 C 350
7
AC7
SOFTWARE
THR A:111 , GLU B:135 , PRO B:136 , ASN B:138 , LEU B:139 , ARG B:206 , HOH B:533
BINDING SITE FOR RESIDUE PG4 B 350
8
AC8
SOFTWARE
THR C:111 , GLU D:135 , PRO D:136 , ALA D:137 , ASN D:138 , LEU D:139 , ARG D:206 , PHE D:209
BINDING SITE FOR RESIDUE PG4 D 350
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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;
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_2obnD01 (D:2-134)
1b: CATH_2obnC01 (C:3-134)
1c: CATH_2obnB01 (B:6-134)
1d: CATH_2obnA01 (A:6-134)
2a: CATH_2obnA02 (A:135-348)
2b: CATH_2obnB02 (B:135-348)
2c: CATH_2obnC02 (C:135-348)
2d: CATH_2obnD02 (D:135-348)
View:
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Anabaena variabilis atcc 29413. Organism_taxid: 240292. Strain: atcc 29413.
(1)
1a
2obnD01
D:2-134
1b
2obnC01
C:3-134
1c
2obnB01
B:6-134
1d
2obnA01
A:6-134
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Anabaena variabilis atcc 29413. Organism_taxid: 240292. Strain: atcc 29413.
(1)
2a
2obnA02
A:135-348
2b
2obnB02
B:135-348
2c
2obnC02
C:135-348
2d
2obnD02
D:135-348
[
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_DUF1611_2obnD01 (D:40-342)
1b: PFAM_DUF1611_2obnD02 (D:40-342)
1c: PFAM_DUF1611_2obnD03 (D:40-342)
1d: PFAM_DUF1611_2obnD04 (D:40-342)
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Clan
:
P-loop_NTPase
(1112)
Family
:
DUF1611
(1)
Anabaena variabilis (strain ATCC 29413 / PCC 7937)
(1)
1a
DUF1611-2obnD01
D:40-342
1b
DUF1611-2obnD02
D:40-342
1c
DUF1611-2obnD03
D:40-342
1d
DUF1611-2obnD04
D:40-342
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (224 KB)
Header - Asym.Unit
Biol.Unit 1 (110 KB)
Header - Biol.Unit 1
Biol.Unit 2 (109 KB)
Header - Biol.Unit 2
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