2NZY - JenaLib

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Title :   CRYSTAL STRUCTURE OF ALPHA1,3-FUCOSYLTRANSFERASE WITH GDP-FUCOSE

Authors :   H. Y. Sun, T. P. Ko

Date :   27 Nov 06 (Deposition) - 23 Jan 07 (Release) - 05 Jul 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.05

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C  (2x)

Keywords :   Alpha1, 3-Fucosyltransferase, Fucosyltransferase, Fuct, Gt 10, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. Y. Sun, S. W. Lin, T. P. Ko, J. F. Pan, C. L. Liu, C. N. Lin, A. H. Wang, C. H. Lin
Structure And Mechanism Of Helicobacter Pylori Fucosyltransferase. A Basis For Lipopolysaccharide Variatio And Inhibitor Design.
J. Biol. Chem. V. 282 9973 2007
PubMed-ID: 17251184 | Reference-DOI: 10.1074/JBC.M610285200

Molecule 1 - ALPHA1,3-FUCOSYLTRANSFERASE
	Chains	:	A, B, C
	EC Number	:	2.4.1.152
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET21B
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	C-TERMINCAL TRUNCATED DOMAIN
	Gene	:	AF008596
	Organism Scientific	:	HELICOBACTER PYLORI
	Organism Taxid	:	210
	Strain	:	NCTC 11639

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (2x)	:			C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 8)

No.	Name	Count	Type	Full Name
1	FUC	3	Ligand/Ion	ALPHA-L-FUCOSE
2	GDP	3	Ligand/Ion	GUANOSINE-5'-DIPHOSPHATE
3	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 1 (3, 5)

No.	Name	Count	Type	Full Name
1	FUC	2	Ligand/Ion	ALPHA-L-FUCOSE
2	GDP	2	Ligand/Ion	GUANOSINE-5'-DIPHOSPHATE
3	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 2 (3, 6)

No.	Name	Count	Type	Full Name
1	FUC	2	Ligand/Ion	ALPHA-L-FUCOSE
2	GDP	2	Ligand/Ion	GUANOSINE-5'-DIPHOSPHATE
3	SO4	2	Ligand/Ion	SULFATE ION

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY A:94 , LEU A:124 , ASN A:240 , TYR A:246 , THR A:248 , GLU A:249 , LYS A:250 , GDP A:3001	BINDING SITE FOR RESIDUE FUC A 4001
2	AC2	SOFTWARE	GLY B:94 , LEU B:124 , ASN B:240 , TYR B:246 , THR B:248 , GLU B:249 , LYS B:250 , GDP B:3002	BINDING SITE FOR RESIDUE FUC B 4002
3	AC3	SOFTWARE	GLY C:94 , LEU C:124 , ASN C:240 , TYR C:246 , THR C:248 , GLU C:249 , LYS C:250 , GDP C:3003	BINDING SITE FOR RESIDUE FUC C 4003
4	AC4	SOFTWARE	HIS B:300 , LYS B:301 , ASN B:302 , ALA B:303 , HOH B:4222	BINDING SITE FOR RESIDUE SO4 B 2001
5	AC5	SOFTWARE	HIS C:300 , LYS C:301 , ASN C:302 , ALA C:303 , HOH C:4096	BINDING SITE FOR RESIDUE SO4 C 2002
6	AC6	SOFTWARE	VAL A:186 , ALA A:187 , SER A:188 , ASN A:189 , ARG A:195 , ASN A:221 , VAL A:222 , LYS A:223 , LYS A:225 , ASN A:240 , GLU A:249 , LYS A:250 , FUC A:4001 , HOH A:4043 , HOH A:4391	BINDING SITE FOR RESIDUE GDP A 3001
7	AC7	SOFTWARE	VAL B:186 , ALA B:187 , SER B:188 , ASN B:189 , ARG B:195 , GLY B:211 , GLY B:212 , ASN B:221 , VAL B:222 , LYS B:223 , LYS B:225 , ASN B:240 , GLU B:249 , LYS B:250 , FUC B:4002 , HOH B:4137 , HOH B:4148 , HOH B:4149	BINDING SITE FOR RESIDUE GDP B 3002
8	AC8	SOFTWARE	VAL C:186 , ALA C:187 , SER C:188 , ASN C:189 , ARG C:195 , GLY C:212 , ASN C:221 , VAL C:222 , LYS C:223 , LYS C:225 , ASN C:240 , GLU C:249 , LYS C:250 , FUC C:4003 , HOH C:4085 , HOH C:4187	BINDING SITE FOR RESIDUE GDP C 3003

(no "SS Bond" information available for 2NZY)

(no "Cis Peptide Bond" information available for 2NZY)

(no "SAP(SNP)/Variant" information available for 2NZY)

(no "PROSITE Motif" information available for 2NZY)

(no "Exon" information available for 2NZY)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:343
 aligned with FUCT_HELPX | O30511 from UniProtKB/Swiss-Prot  Length:478

    Alignment length:352
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350  
           FUCT_HELPX     1 MFQPLLDAYVESASIEKMASKSPPPLKIAVANWWGDEEIKEFKNSVLYFILSQRYTITLHQNPNEFSDLVFGNPLGSARKILSYQNAKRVFYTGENESPNFNLFDYAIGFDELDFNDRYLRMPLYYDRLHHKAESVNDTTAPYKLKDNSLYALKKPSHCFKEKHPNLCAVVNDESDPLKRGFASFVASNPNAPIRNAFYDALNSIEPVTGGGSVRNTLGYNVKNKNEFLSQYKFNLCFENTQGYGYVTEKIIDAYFSHTIPIYWGSPSVAKDFNPKSFVNVHDFKNFDEAIDYIKYLHTHKNAYLDMLYENPLNTLDGKAYFYQNLSFKKILAFFKTILENDTIYHDNPFIF 352
               SCOP domains d2nzya_ A: Alpha1,3-fucosyltransferase FucT                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh...........eeeee.....hhhhhhhhhhhhhhhhhhh..eeeee........ee....---------......eee.............eeee.....hhh.eee.hhhhhhhhhhhhhh............hhhhh.....hhhhhhhhhhhhhh........eeeee......hhhhhhhhhhhhh...eee.............hhhhhhh.eeeeeee.........hhhhhhhhhh..eeeee...hhhhhhhhhhhee.hhh.hhhhhhhhhhhhhhhhhhhhhhhh....eee..eeehhhhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2nzy A   1 MFQPLLDAYVESASIEKMASKSPPPLKIAVANWWGDEEIKEFKNSVLYFILSQRYTITLHQNPNEFSDLVFGNP---------YQNAKRVFYTGENESPNFNLFDYAIGFDELDFNDRYLRMPLYYDRLHHKAESVNDTTAPYKLKDNSLYALKKPSHCFKEKHPNLCAVVNDESDPLKRGFASFVASNPNAPIRNAFYDALNSIEPVTGGGSVRNTLGYNVKNKNEFLSQYKFNLCFENTQGYGYVTEKIIDAYFSHTIPIYWGSPSVAKDFNPKSFVNVHDFKNFDEAIDYIKYLHTHKNAYLDMLYENPLNTLDGKAYFYQNLSFKKILAFFKTILENDTIYHDNPFIF 352
                                    10        20        30        40        50        60        70   |     -   |    90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350  
                                                                                                    74        84

Chain B from PDB  Type:PROTEIN  Length:338
 aligned with FUCT_HELPX | O30511 from UniProtKB/Swiss-Prot  Length:478

    Alignment length:348
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340        
           FUCT_HELPX     1 MFQPLLDAYVESASIEKMASKSPPPLKIAVANWWGDEEIKEFKNSVLYFILSQRYTITLHQNPNEFSDLVFGNPLGSARKILSYQNAKRVFYTGENESPNFNLFDYAIGFDELDFNDRYLRMPLYYDRLHHKAESVNDTTAPYKLKDNSLYALKKPSHCFKEKHPNLCAVVNDESDPLKRGFASFVASNPNAPIRNAFYDALNSIEPVTGGGSVRNTLGYNVKNKNEFLSQYKFNLCFENTQGYGYVTEKIIDAYFSHTIPIYWGSPSVAKDFNPKSFVNVHDFKNFDEAIDYIKYLHTHKNAYLDMLYENPLNTLDGKAYFYQNLSFKKILAFFKTILENDTIYHDN 348
               SCOP domains d2nzyb_ B: Alpha1,3-fucosyltransferase FucT                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhh...........eeeeee....hhhhhhhhhhhhhhhhhh...eeeee........eeee..----------....eeee.............eeee.....hhh.eee.hhhhhhhhhhhhhh............hhhhh.....hhhhhhhhhhhhhh........eeeee......hhhhhhhhhhhhh....ee.............hhhhhhhheeeeeee.........hhhhhhhhhh..eeeee...hhhhh.hhhhhee.hhh.hhhhhhhhhhhhhhhhhhhhhhhh....eee..eeehhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2nzy B   1 MFQPLLDAYVESASIEKMASKSPPPLKIAVANWWGDEEIKEFKNSVLYFILSQRYTITLHQNPNEFSDLVFGNP----------QNAKRVFYTGENESPNFNLFDYAIGFDELDFNDRYLRMPLYYDRLHHKAESVNDTTAPYKLKDNSLYALKKPSHCFKEKHPNLCAVVNDESDPLKRGFASFVASNPNAPIRNAFYDALNSIEPVTGGGSVRNTLGYNVKNKNEFLSQYKFNLCFENTQGYGYVTEKIIDAYFSHTIPIYWGSPSVAKDFNPKSFVNVHDFKNFDEAIDYIKYLHTHKNAYLDMLYENPLNTLDGKAYFYQNLSFKKILAFFKTILENDTIYHDN 348
                                    10        20        30        40        50        60        70   |     -    |   90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340        
                                                                                                    74         85

Chain C from PDB  Type:PROTEIN  Length:351
 aligned with FUCT_HELPX | O30511 from UniProtKB/Swiss-Prot  Length:478

    Alignment length:351
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350 
           FUCT_HELPX     1 MFQPLLDAYVESASIEKMASKSPPPLKIAVANWWGDEEIKEFKNSVLYFILSQRYTITLHQNPNEFSDLVFGNPLGSARKILSYQNAKRVFYTGENESPNFNLFDYAIGFDELDFNDRYLRMPLYYDRLHHKAESVNDTTAPYKLKDNSLYALKKPSHCFKEKHPNLCAVVNDESDPLKRGFASFVASNPNAPIRNAFYDALNSIEPVTGGGSVRNTLGYNVKNKNEFLSQYKFNLCFENTQGYGYVTEKIIDAYFSHTIPIYWGSPSVAKDFNPKSFVNVHDFKNFDEAIDYIKYLHTHKNAYLDMLYENPLNTLDGKAYFYQNLSFKKILAFFKTILENDTIYHDNPFI 351
               SCOP domains d2nzyc_ C: Alpha1,3-fucosyltransferase FucT                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh...........eeeee.....hhhhhhhhhhhhhhhhhhh..eeeee........eeee..hhhhhhhhh....eeeee.............eeee.....hhh.eee.hhhhhhhhhhhhhh............hhhhhh....hhhhhhhhhhhhhh........eeeee......hhhhhhhhhhhhhhh..ee.............hhhhhhhheeeeeee.........hhhhhhhhhh..eeeee...hhhhhhhhhhhee.hhh.hhhhhhhhhhhhhhhhhhhhhhhhh...eee..eeehhhhhhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2nzy C   1 MFQPLLDAYVESASIEKMASKSPPPLKIAVANWWGDEEIKEFKNSVLYFILSQRYTITLHQNPNEFSDLVFGNPLGSARKILSYQNAKRVFYTGENESPNFNLFDYAIGFDELDFNDRYLRMPLYYDRLHHKAESVNDTTAPYKLKDNSLYALKKPSHCFKEKHPNLCAVVNDESDPLKRGFASFVASNPNAPIRNAFYDALNSIEPVTGGGSVRNTLGYNVKNKNEFLSQYKFNLCFENTQGYGYVTEKIIDAYFSHTIPIYWGSPSVAKDFNPKSFVNVHDFKNFDEAIDYIKYLHTHKNAYLDMLYENPLNTLDGKAYFYQNLSFKKILAFFKTILENDTIYHDNPFI 351
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: UDP-Glycosyltransferase/glycogen phosphorylase (296)

Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase (296)

Family: FucT-like (3)

Protein domain: Alpha1,3-fucosyltransferase FucT (3)

Helicobacter pylori [TaxId: 210] (3)

1a	d2nzya_	A:
1b	d2nzyb_	B:
1c	d2nzyc_	C:

(no "CATH Domain" information available for 2NZY)

(no "Pfam Domain" information available for 2NZY)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C (FUCT_HELPX | O30511)

molecular function
	GO:0008417	fucosyltransferase activity	Catalysis of the transfer of a fucosyl group to an acceptor molecule, typically another carbohydrate or a lipid.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016757	transferase activity, transferring glycosyl groups	Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor).
biological process
	GO:0036065	fucosylation	The covalent attachment of a fucosyl group to an acceptor molecule.
	GO:0006486	protein glycosylation	A protein modification process that results in the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid, e.g. the addition of glycan chains to proteins.
cellular component
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Asymmetric Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2nzy)

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	2nzy
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	2.4.1.152
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UniProtKB/Swiss-Prot
	FUCT_HELPX \| O30511	:	2nzw 2nzx

2nzw	THE SAME PROTEIN COMPLEXED WITH GDP.
2nzx	THE SAME PROTEIN COMPLEXED WITH GDP.

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 8)

Sites (8, 8)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

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Exons (0, 0)

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