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(-) Description

Title :  SPATIAL STRUCTURE OF HER2/ERBB2 DIMERIC TRANSMEMBRANE DOMAIN IN THE PRESENCE OF CYTOPLASMIC JUXTAMEMBRANE DOMAINS
 
Authors :  P. E. Bragin, K. S. Mineev, E. Bocharov, O. Bocharova, A. Arseniev
Date :  05 May 15  (Deposition) - 24 Feb 16  (Release) - 22 Mar 17  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (10x)
NMR Structure *:  A,B  (1x)
Keywords :  Her2, Erbb2, Tyrosine Kinase, Activation, Transmembrane, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  P. E. Bragin, K. S. Mineev, O. V. Bocharova, P. E. Volynsky, E. V. Bocharov, A. S. Arseniev
Her2 Transmembrane Domain Dimerization Coupled With Self-Association Of Membrane-Embedded Cytoplasmic Juxtamembrane Regions.
J. Mol. Biol. V. 428 52 2016
PubMed-ID: 26585403  |  Reference-DOI: 10.1016/J.JMB.2015.11.007

(-) Compounds

Molecule 1 - RECEPTOR TYROSINE-PROTEIN KINASE ERBB-2
    ChainsA, B
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPGEMEX-1
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentTRANSMEMBRANE DOMAIN (UNP RESIDUES 644-700)
    GeneERBB2, HER2, MLN19, NEU, NGL
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymMETASTATIC LYMPH NODE GENE 19 PROTEIN, MLN 19, PROTO- ONCOGENE NEU, PROTO-ONCOGENE C-ERBB-2, TYROSINE KINASE-TYPE CELL SURFACE RECEPTOR HER2, P185ERBB2

 Structural Features

(-) Chains, Units

  12
NMR Structure (10x)AB
NMR Structure * (1x)AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2N2A)

(-) Sites  (0, 0)

(no "Site" information available for 2N2A)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2N2A)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2N2A)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2N2A)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 2N2A)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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Chain A from PDB  Type:PROTEIN  Length:58
                                                                                          
               SCOP domains ---------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------- Transcript
                 2n2a A   1 AEQRASPLTSIISAVVGILLVVVLGVVFGILIKRRQQKIRKYTMRRLLQETELVEPLG  58
                                    10        20        30        40        50        

Chain B from PDB  Type:PROTEIN  Length:58
                                                                                          
               SCOP domains ---------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------- Transcript
                 2n2a B 101 AEQRASPLTSIISAVVGILLVVVLGVVFGILIKRRQQKIRKYTMRRLLQETELVEPLG 158
                                   110       120       130       140       150        

   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2N2A)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2N2A)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2N2A)

(-) Gene Ontology  (73, 73)

NMR Structure(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ERBB2_HUMAN | P046261mfg 1mfl 1mw4 1n8z 1ovc 1qr1 1s78 2a91 2jwa 2ks1 2l4k 3be1 3h3b 3mzw 3n85 3pp0 3rcd 3wlw 3wsq 4gfu 4hrl 4hrm 4hrn 4nnd 5k33 5kwg

(-) Related Entries Specified in the PDB File

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