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(-) Description

Title :  CR1 SUSHI DOMAINS 1 AND 2
 
Authors :  H. J. Park, M. J. Guariento, M. Maciejewski, R. Hauart, W. Tham, A. F. Cow C. Q. Schmidt, H. Martens, K. M. Liszewski, D. Hourcade, P. N. Barlow, J. P. Atkinson
Date :  27 Aug 13  (Deposition) - 13 Nov 13  (Release) - 22 Jan 14  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Cr1, Pfrh4, Malaria, Ccp, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  H. J. Park, M. Guariento, M. Maciejewski, R. Hauhart, W. H. Tham, A. F. Cowman, C. Q. Schmidt, H. D. Mertens, M. K. Liszewski, D. E. Hourcade, P. N. Barlow, J. P. Atkinson
Using Mutagenesis And Structural Biology To Map The Binding Site For The Plasmodium Falciparum Merozoite Protein Pfrh4 On The Human Immune Adherence Receptor.
J. Biol. Chem. V. 289 450 2014
PubMed-ID: 24214979  |  Reference-DOI: 10.1074/JBC.M113.520346

(-) Compounds

Molecule 1 - COMPLEMENT RECEPTOR TYPE 1
    ChainsA
    EngineeredYES
    Expression SystemKOMAGATAELLA PASTORIS
    Expression System CommonPICHIA PASTORIS
    Expression System PlasmidPPICZAB
    Expression System Taxid4922
    Expression System Vector TypePLASMID
    FragmentSUSHI DOMAINS 1 AND 2(UNP RESIDUES 41-163)
    GeneCR1, C3BR
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymC3B/C4B RECEPTOR

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x)A
NMR Structure * (1x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2MCZ)

(-) Sites  (0, 0)

(no "Site" information available for 2MCZ)

(-) SS Bonds  (4, 4)

NMR Structure
No.Residues
1A:2 -A:45
2A:32 -A:58
3A:63 -A:104
4A:90 -A:120

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2MCZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2MCZ)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SUSHIPS50923 Sushi/CCP/SCR domain profile.CR1_HUMAN41-101
102-163
164-234
295-355
236-293
356-418
419-489
491-551
552-613
614-684
745-805
686-743
806-868
869-939
941-1001
1002-1063
1064-1134
1195-1255
1136-1193
1256-1318
1319-1389
1394-1454
1455-1516
1517-1587
1648-1708
1589-1646
1709-1771
1772-1842
1846-1906
1907-1967
  1-
A:61-122
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
NMR Structure * (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SUSHIPS50923 Sushi/CCP/SCR domain profile.CR1_HUMAN41-101
102-163
164-234
295-355
236-293
356-418
419-489
491-551
552-613
614-684
745-805
686-743
806-868
869-939
941-1001
1002-1063
1064-1134
1195-1255
1136-1193
1256-1318
1319-1389
1394-1454
1455-1516
1517-1587
1648-1708
1589-1646
1709-1771
1772-1842
1846-1906
1907-1967
  1-
A:61-122
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-

(-) Exons   (4, 4)

NMR Structure (4, 4)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1cENST000003670511cENSE00001443318chr1:207669502-207669733232CR1_HUMAN1-41410--
1.2ENST000003670512ENSE00001653333chr1:207679249-207679428180CR1_HUMAN41-101611A:1-6060
1.3aENST000003670513aENSE00001772738chr1:207680059-207680158100CR1_HUMAN101-134341A:60-9334
1.4ENST000003670514ENSE00001701427chr1:207684914-20768499986CR1_HUMAN134-163301A:93-12230
1.13ENST0000036705113ENSE00001593267chr1:207715527-207715925399CR1_HUMAN163-2961341A:122-1221
1.14ENST0000036705114ENSE00001772916chr1:207718653-207718829177CR1_HUMAN296-355600--
1.15ENST0000036705115ENSE00001593844chr1:207718921-207719023103CR1_HUMAN355-389350--
1.16ENST0000036705116ENSE00001643243chr1:207720616-20772070186CR1_HUMAN389-418300--
1.17ENST0000036705117ENSE00001776048chr1:207724080-207724298219CR1_HUMAN418-491740--
1.18ENST0000036705118ENSE00001675948chr1:207725309-207725488180CR1_HUMAN491-551610--
1.19aENST0000036705119aENSE00001659431chr1:207726097-207726196100CR1_HUMAN551-584340--
1.20ENST0000036705120ENSE00001770091chr1:207731883-20773196886CR1_HUMAN584-613300--
1.22ENST0000036705122ENSE00001741034chr1:207734084-207734482399CR1_HUMAN613-7461340--
1.23ENST0000036705123ENSE00001636982chr1:207737209-207737385177CR1_HUMAN746-805600--
1.24ENST0000036705124ENSE00001679418chr1:207737477-207737579103CR1_HUMAN805-839350--
1.25ENST0000036705125ENSE00001664101chr1:207739183-20773926886CR1_HUMAN839-868300--
1.26ENST0000036705126ENSE00001760896chr1:207741169-207741387219CR1_HUMAN868-941740--
1.27ENST0000036705127ENSE00001615740chr1:207742404-207742583180CR1_HUMAN941-1001610--
1.28aENST0000036705128aENSE00001766771chr1:207743192-207743291100CR1_HUMAN1001-1034340--
1.29ENST0000036705129ENSE00001735040chr1:207748940-20774902586CR1_HUMAN1034-1063300--
1.30ENST0000036705130ENSE00001745761chr1:207751150-207751548399CR1_HUMAN1063-11961340--
1.31ENST0000036705131ENSE00001674858chr1:207753585-207753761177CR1_HUMAN1196-1255600--
1.32ENST0000036705132ENSE00001628329chr1:207753856-207753958103CR1_HUMAN1255-1289350--
1.33ENST0000036705133ENSE00001800449chr1:207755263-20775534886CR1_HUMAN1289-1318300--
1.34ENST0000036705134ENSE00001649667chr1:207757994-207758221228CR1_HUMAN1318-1394770--
1.35ENST0000036705135ENSE00001443342chr1:207760731-207760910180CR1_HUMAN1394-1454610--
1.36ENST0000036705136ENSE00001443341chr1:207762020-207762119100CR1_HUMAN1454-1487340--
1.37ENST0000036705137ENSE00001443339chr1:207780596-20778068186CR1_HUMAN1487-1516300--
1.38bENST0000036705138bENSE00001443338chr1:207782635-207783033399CR1_HUMAN1516-16491340--
1.39ENST0000036705139ENSE00001665886chr1:207785022-207785198177CR1_HUMAN1649-1708600--
1.40ENST0000036705140ENSE00001722915chr1:207785284-207785386103CR1_HUMAN1708-1742350--
1.41ENST0000036705141ENSE00001687254chr1:207787749-20778783486CR1_HUMAN1742-1771300--
1.42ENST0000036705142ENSE00001650414chr1:207789920-207790147228CR1_HUMAN1771-1847770--
1.43ENST0000036705143ENSE00001443333chr1:207791416-207791592177CR1_HUMAN1847-1906600--
1.44ENST0000036705144ENSE00001443332chr1:207793225-207793410186CR1_HUMAN1906-1968630--
1.45ENST0000036705145ENSE00001648710chr1:207795318-20779534124CR1_HUMAN1968-197690--
1.46ENST0000036705146ENSE00001443330chr1:207796338-20779641376CR1_HUMAN1976-2001260--
1.47aENST0000036705147aENSE00001443329chr1:207803862-207803966105CR1_HUMAN2001-2036360--
1.48cENST0000036705148cENSE00001443328chr1:207812742-2078139921251CR1_HUMAN2036-203940--

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:122
 aligned with CR1_HUMAN | P17927 from UniProtKB/Swiss-Prot  Length:2039

    Alignment length:122
                                    51        61        71        81        91       101       111       121       131       141       151       161  
            CR1_HUMAN    42 QCNAPEWLPFARPTNLTDEFEFPIGTYLNYECRPGYSGRPFSIICLKNSVWTGAKDRCRRKSCRNPPDPVNGMVHVIKGIQFGSQIKYSCTKGYRLIGSSSATCIISGDTVIWDNETPICDR 163
               SCOP domains d2mcza1 A:1-60 automated matches                            d2mcza2 A:61-122 automated matches                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eee............eee.eee..........eeeee..ee.....................eeee.......eeeeee...........eeeeeee..eeee......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE SUSHI  PDB: - UniProt: 41-101                               SUSHI  PDB: A:61-122 UniProt: 102-163                          PROSITE
           Transcript 1 (1) Exon 1.2  PDB: A:1-60 UniProt: 41-101 [INCOMPLETE]          -------------------------------------------------------------1 Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------Exon 1.3a  PDB: A:60-93           ----------------------------- Transcript 1 (2)
           Transcript 1 (3) --------------------------------------------------------------------------------------------Exon 1.4  PDB: A:93-122        Transcript 1 (3)
                 2mcz A   1 QCNAPEWLPFARPTQLTDEFEFPIGTYLNYECRPGYSGRPFSIICLKNSVWTGAKDRCRRKSCRNPPDPVNGMVHVIKGIQFGSQIKYSCTKGYRLIGSSSATCIISGDTVIWDQETPICDR 122
                                    10        20        30        40        50        60        70        80        90       100       110       120  

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

NMR Structure

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2MCZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2MCZ)

(-) Gene Ontology  (22, 22)

NMR Structure(hide GO term definitions)
Chain A   (CR1_HUMAN | P17927)
molecular function
    GO:0001851    complement component C3b binding    Interacting selectively and non-covalently with the C3b product of the complement cascade.
    GO:0004877    complement component C3b receptor activity    Combining with the C3b product of the complement cascade and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.
    GO:0001855    complement component C4b binding    Interacting selectively and non-covalently with the C4b product of the classical complement cascade.
    GO:0001861    complement component C4b receptor activity    Combining with the C4b product of the classical complement cascade and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.
    GO:0001618    virus receptor activity    Combining with a virus component and mediating entry of the virus into the cell.
biological process
    GO:0006958    complement activation, classical pathway    Any process involved in the activation of any of the steps of the classical pathway of the complement cascade which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes.
    GO:0002430    complement receptor mediated signaling pathway    A series of molecular signals generated as a consequence of a component of the complement pathway binding to a complement receptor. Such components include both whole complement proteins and fragments of complement proteins generated through the activity of the complement pathway.
    GO:0002376    immune system process    Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
    GO:0045087    innate immune response    Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
    GO:0045957    negative regulation of complement activation, alternative pathway    Any process that stops, prevents, or reduces the frequency, rate or extent of complement activation by the alternative pathway.
    GO:0045959    negative regulation of complement activation, classical pathway    Any process that stops, prevents, or reduces the frequency, rate or extent of complement activation by the classical pathway.
    GO:1900004    negative regulation of serine-type endopeptidase activity    Any process that stops, prevents or reduces the frequency, rate or extent of serine-type endopeptidase activity.
    GO:1900005    positive regulation of serine-type endopeptidase activity    Any process that activates or increases the frequency, rate or extent of serine-type endopeptidase activity.
    GO:0030449    regulation of complement activation    Any process that modulates the frequency, rate or extent of complement activation.
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
    GO:0009986    cell surface    The external part of the cell wall and/or plasma membrane.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005887    integral component of plasma membrane    The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CR1_HUMAN | P179271gkg 1gkn 1gop 1ppq 2mcy 2q7z 5fo9

(-) Related Entries Specified in the PDB File

2mcy