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(-) Description

Title :  SOLUTION NMR STRUCTURE OF HUMAN NFATC2IP UBIQUITIN-LIKE DOMAIN, NFATC2IP_244_338, NESG TARGET HT65A/OCSP TARGET HS00387_244_338/SGC-TORONTO
 
Authors :  B. Wu, A. Yee, S. Houliston, R. Doherty, A. Semesi, S. Dhe-Paganon, C. H. Arrowsmith, Northeast Structural Genomics Consortium (Ne Ontario Centre For Structural Proteomics (Ocsp)
Date :  03 Dec 10  (Deposition) - 22 Dec 10  (Release) - 22 Feb 12  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Ubiquitin-Like Domain, Structural Genomics, Psi-Biology, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Ontario Centre For Structural Proteomics, Ocsp, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Doherty, B. Wu, A. Yee, A. Lemak, S. Houliston, C. Fares, S. Srisalam C. Bulter, A. M. Edwards, J. Weigelt, S. Dhe-Paganon, C. H. Arrowsmith
Human Nfatc2Ip Ubiquitin-Like Domains
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - NFATC2-INTERACTING PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector: P15TV LIC
    Fragment: SEQUENCE DATABASE RESIDUES 244-338
    Gene: NFATC2IP, NIP45
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: 45 KDA NF-AT-INTERACTING PROTEIN, 45 KDA NFAT-INTERACTING PROTEIN, NUCLEAR FACTOR OF ACTIVATED T-CELLS, CYTOPLASMIC 2- INTERACTING PROTEIN

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2L76)

(-) Sites  (0, 0)

(no "Site" information available for 2L76)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2L76)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2L76)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2L76)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2L76)

(-) Exons   (3, 3)

NMR Structure (3, 3)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1bENST000003208051bENSE00001222380chr16:28962315-28962719405NF2IP_HUMAN1-1291290--
1.2ENST000003208052ENSE00001596297chr16:28963453-2896352573NF2IP_HUMAN130-154250--
1.3ENST000003208053ENSE00001730472chr16:28965886-28966003118NF2IP_HUMAN154-193400--
1.4ENST000003208054ENSE00001686663chr16:28967299-2896737981NF2IP_HUMAN193-220280--
1.5ENST000003208055ENSE00001799531chr16:28967472-28967658187NF2IP_HUMAN220-282631A:244-28239
1.6ENST000003208056ENSE00001698347chr16:28970038-28970182145NF2IP_HUMAN283-331491A:283-33149
1.7ENST000003208057ENSE00001222324chr16:28970312-28970421110NF2IP_HUMAN331-367371A:331-3388
1.8bENST000003208058bENSE00001222368chr16:28975026-289784183393NF2IP_HUMAN368-419520--

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:95
 aligned with NF2IP_HUMAN | Q8NCF5 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:95
                                   253       263       273       283       293       303       313       323       333     
          NF2IP_HUMAN   244 QGQEDEVVLVEGPTLPETPRLFPLKIRCRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVLTSS 338
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeeeee....eeeeee.....hhhhhhhhhhhhh.hhh.eeeee..ee.....hhhhhh.....eeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.5  PDB: A:244-282 [INCOMPLETE]  Exon 1.6  PDB: A:283-331 UniProt: 283-331        ------- Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------------------------------Exon 1.7 Transcript 1 (2)
                 2l76 A 244 QGQEDEVVLVEGPTLPETPRLFPLKIRCRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVLTSS 338
                                   253       263       273       283       293       303       313       323       333
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2L76)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2L76)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2L76)

(-) Gene Ontology  (6, 6)

NMR Structure(hide GO term definitions)
Chain A   (NF2IP_HUMAN | Q8NCF5)
molecular function
    GO:0031386    protein tag    A molecular function exhibited by a protein that is covalently attached (AKA tagged or conjugated) to another protein where it acts as a marker, recognized by the cellular apparatus to target the tagged protein for some cellular process such as modification, sequestration, transport or degradation.
biological process
    GO:0001816    cytokine production    The appearance of a cytokine due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.
    GO:0045944    positive regulation of transcription from RNA polymerase II promoter    Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0016925    protein sumoylation    The process in which a SUMO protein (small ubiquitin-related modifier) is conjugated to a target protein via an isopeptide bond between the carboxyl terminus of SUMO with an epsilon-amino group of a lysine residue of the target protein.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NF2IP_HUMAN | Q8NCF5: 2jxx 3rd2

(-) Related Entries Specified in the PDB File

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