2JXX - JenaLib

Title :   NMR SOLUTION STRUCTURE OF UBIQUITIN-LIKE DOMAIN OF NFATC2IP. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET HR5627

Authors :   R. S. Doherty, S. Dhe-Paganon, C. Fares, A. Lemak, C. Butler, S. Srisailam, M. Karra, A. Yee, A. M. Edwards, J. Weigelt, C. H. Arrowsmith, Northeast Structural Genomics Consortium (Nesg), Structural Genomics Consortium (Sgc)

Date :   30 Nov 07 (Deposition) - 11 Dec 07 (Release) - 24 Feb 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (20x)

Keywords :   Nuclear Factor Of Activated T-Cells, Cytoplasmic 2- Interacting Protein, Ubiquitin Like Homologue, Nfat Complex, Alternative Splicing, Coiled Coil, Methylation, Nucleus, Phosphoprotein, Polymorphism, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Structural Genomics Consortium, Sgc, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. S. Doherty, S. Dhe-Paganon, C. Fares, A. Lemak, C. Butler, S. Srisailam, M. Karra, A. Yee, J. Weigelt, A. M. Edwards, C. H. Arrowsmith
Solution Structure Of Ubiquitin-Like Domain Of Nfatc2Ip.
To Be Published
PubMed: search
(for further references see the PDB file header)

Compounds

Molecule 1 - NFATC2-INTERACTING PROTEIN
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET28-MHL
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	UBIQUITIN-LIKE DOMAIN: RESIDUES 342-419
	Gene	:	NFATC2IP, NIP45
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	NUCLEAR FACTOR OF ACTIVATED T-CELLS, CYTOPLASMIC 2-INTERACTING PROTEIN, 45 KDA NFAT-INTERACTING PROTEIN, 45 KDA NF-AT-INTERACTING PROTEIN

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 1)

Exons (2, 2)

Sequences/Alignments

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:PROTEIN  Length:78
 aligned with NF2IP_HUMAN | Q8NCF5 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:78
                                   351       361       371       381       391       401       411        
          NF2IP_HUMAN   342 TETSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVWG 419
               SCOP domains d2jxxa_ A: automated matches                                                   SCOP domains
               CATH domains 2jxxA00 A:20-97                                                                CATH domains
               Pfam domains ------Rad60-SLD-2jxxA01 A:26-96                                              - Pfam domains
         Sec.struct. author .....eeeeeeee.....eeeeeee...hhhhhhhhhhhhh.......eeee..ee.....hhhhhh....eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------UBIQUITIN_2  PDB: A:26-95 UniProt: 348-417                            -- PROSITE
               Transcript 1 Exon 1.7  PDB: A:20-45    Exon 1.8b  PDB: A:46-97 UniProt: 368-419             Transcript 1
                 2jxx A  20 TETSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVWG  97
                                    29        39        49        59        69        79        89

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Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (1, 1)

Pfam Domains (1, 1)

Gene Ontology (6, 6)

NMR Structure(hide GO term definitions)

Chain A (NF2IP_HUMAN | Q8NCF5)

molecular function
	GO:0031386	protein tag	A molecular function exhibited by a protein that is covalently attached (AKA tagged or conjugated) to another protein where it acts as a marker, recognized by the cellular apparatus to target the tagged protein for some cellular process such as modification, sequestration, transport or degradation.
biological process
	GO:0001816	cytokine production	The appearance of a cytokine due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.
	GO:0045944	positive regulation of transcription from RNA polymerase II promoter	Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
	GO:0016925	protein sumoylation	The process in which a SUMO protein (small ubiquitin-related modifier) is conjugated to a target protein via an isopeptide bond between the carboxyl terminus of SUMO with an epsilon-amino group of a lysine residue of the target protein.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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