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Title :   SOLUTION STRUCTURE OF HUMAN UBIQUITIN-LIKE DOMAIN OF HERPUD2_9_85, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) TARGET HT53A

Authors :   B. Wu, A. Yee, C. Fares, A. Lemak, A. Gutmanas, R. Doherty, A. Semesi, S. D Paganon, C. Arrowsmith, Northeast Structural Genomics Consorti (Nesg), Structural Genomics Consortium (Sgc)

Date :   06 Jan 09 (Deposition) - 10 Feb 09 (Release) - 23 May 12 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (20x)
NMR Structure *: A  (1x)

Keywords :   Ubl Domain, Membrane, Transmembrane, Unfolded Protein Response, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Ontario Centre For Structural Proteomics, Ocsp, Unknown Function, Protein Binding, Sgc (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. Doherty, B. Wu, C. Fares, A. Lemak, A. Gutmanas, A. Semesi, A. Yee, C. H. Arrowsmith, S. Dhe-Paganon
Structure Of Human Homocysteine-Inducible, Endoplasmic Reticulum Stress-Inducible, Ubiquitin-Like Domain Member 2 (Herpud2 Or Herp)
To Be Published
PubMed: search
(for further references see the PDB file header)

Compounds

Molecule 1 - HOMOCYSTEINE-RESPONSIVE ENDOPLASMIC RETICULUM-RESIDENT UBIQUITIN-LIKE DOMAIN MEMBER 2 PROTEIN
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	P15TV LIC
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	UBIQUITIN-LIKE DOMAIN, RESIDUES 9-85
	Gene	:	HERPUD2
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 1)

Exons (0, 0)

Sequences/Alignments

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:77
 aligned with HERP2_HUMAN | Q9BSE4 from UniProtKB/Swiss-Prot  Length:406

    Alignment length:77
                                    18        28        38        48        58        68        78       
           HERP2_HUMAN    9 PVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 85
               SCOP domains d2kdba_ A: automated matches                                                  SCOP domains
               CATH domains 2kdbA00 A:1-77                                                                CATH domains
               Pfam domains ------ubiquitin-2kdbA01 A:7-77                                                Pfam domains
         Sec.struct. author .eeeeee........eeeee....hhhhhhhhhhhhh..........eee..eee.....hhhhhh....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -UBIQUITIN_2  PDB: A:2-63 UniProt: 10-71                       -------------- PROSITE
                 Transcript ----------------------------------------------------------------------------- Transcript
                  2kdb A  1 PVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 77
                                    10        20        30        40        50        60        70

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Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (1, 1)

Pfam Domains (1, 1)

Gene Ontology (4, 4)

NMR Structure(hide GO term definitions)

Chain A (HERP2_HUMAN | Q9BSE4)

biological process
	GO:0006986	response to unfolded protein	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an unfolded protein stimulus.
	GO:0007283	spermatogenesis	The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis.
cellular component
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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