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(-) Description

Title :  SOLUTION NMR STRUCTURE OF SALMONELLA TYPHIMURIUM LT2 SECRETED PROTEIN STM0082: NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET STR109
 
Authors :  A. Eletsky, D. Parish, G. Liu, D. Sukumaran, M. Jiang, K. Cunningham, L. R. Xiao, B. Rost, G. T. Montelione, T. Szyperski, Northeast Structur Genomics Consortium (Nesg)
Date :  31 Dec 06  (Deposition) - 06 Feb 07  (Release) - 13 Jul 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (20x)
NMR Structure *:  A,B  (1x)
Keywords :  Gft-Nmr, Homodimer, Psi-2, Alpha+Beta, Putative Secreted Protein, Structural Genomics, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Eletsky, D. Parish, G. Liu, D. Sukumaran, M. Jiang, K. Cunningham, L. Ma, R. Xiao, B. Rost, G. T. Montelione, T. Szyperski, Northeast Structural Genomics Consortium (Nesg)
Solution Nmr Structure Of Salmonella Typhimurium Lt2 Secreted Protein Stm0082: Northeast Structural Genomics Consortium Target Str109
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE SECRETED PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)+ MAGIC
    Expression System Taxid: 562
    Expression System Vector: PET21
    Expression System Vector Type: VECTOR
    Gene: STM0082
    Organism Scientific: SALMONELLA TYPHIMURIUM
    Organism Taxid: 99287
    Strain: LT2

 Structural Features

(-) Chains, Units

  12
NMR Structure (20x): AB
NMR Structure * (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2JNA)

(-) Sites  (0, 0)

(no "Site" information available for 2JNA)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2JNA)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2JNA)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2JNA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2JNA)

(-) Exons   (0, 0)

(no "Exon" information available for 2JNA)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:104
 aligned with Q7CR88_SALTY | Q7CR88 from UniProtKB/TrEMBL  Length:96

    Alignment length:104
                                                                                                                          96        
                                    10        20        30        40        50        60        70        80        90     |   -    
         Q7CR88_SALTY     1 MKKRIIAAALLATVASFSTLAAEQVSKQEISHFKLVKVGTINVSQSGGQISSPSDLREKLSELADAKGGKYYHIIAAREHGPNFEAVAEVYNDATK--------   -
               SCOP domains d2jnaa1 A:1-96 Hypothetical protein STM0082                                                     -------- SCOP domains
               CATH domains ------------------------2jnaA01 A:25-93 Flavin-binding protein dodecin                       ----------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........................hhhhhhhhh.eeeeeeeeeee.....hhhhhhhhhhhhhhhhh..eeeeeeeeee..eeeeeeeeee............ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------- Transcript
                 2jna A   1 MKKRIIAAALLATVASFSTLAAEQVSKQEISHFKLVKVGTINVSQSGGQISSPSDLREKLSELADAKGGKYYHIIAAREHGPNFEAVAEVYNDATKLEHHHHHH 104
                                    10        20        30        40        50        60        70        80        90       100    


Chain B from PDB  Type:PROTEIN  Length:104
 aligned with Q7CR88_SALTY | Q7CR88 from UniProtKB/TrEMBL  Length:96

    Alignment length:104
                                                                                                                          96        
                                    10        20        30        40        50        60        70        80        90     |   -    
         Q7CR88_SALTY     1 MKKRIIAAALLATVASFSTLAAEQVSKQEISHFKLVKVGTINVSQSGGQISSPSDLREKLSELADAKGGKYYHIIAAREHGPNFEAVAEVYNDATK--------   -
               SCOP domains d2jnab_ B: Hypothetical protein STM0082                                                                  SCOP domains
               CATH domains ------------------------2jnaB01 B:225-293 Flavin-binding protein dodecin                     ----------- CATH domains
           Pfam domains (1) ---------------------------------DUF1471-2jnaB01 B:234-292                                  ------------ Pfam domains (1)
           Pfam domains (2) ---------------------------------DUF1471-2jnaB02 B:234-292                                  ------------ Pfam domains (2)
         Sec.struct. author .........................hhhhhhhhh.eeeeeeeeeee.hhh.hhhhhhhhhhhhhhhhh..eeeeeeeee...eeeeeeeeee............ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------- Transcript
                 2jna B 201 MKKRIIAAALLATVASFSTLAAEQVSKQEISHFKLVKVGTINVSQSGGQISSPSDLREKLSELADAKGGKYYHIIAAREHGPNFEAVAEVYNDATKLEHHHHHH 304
                                   210       220       230       240       250       260       270       280       290       300
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

NMR Structure
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 2)

NMR Structure
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 2)

NMR Structure
(-)
Clan: no clan defined [family: DUF1471] (2)

(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
    (no "Gene Ontology" information available for 2JNA)

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 Related Entries

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        Q7CR88_SALTY | Q7CR88: 2ma8

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