2IUK - JenaLib

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Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF SOYBEAN LIPOXYGENASE-D

Authors :   B. Youn, G. E. Sellhorn, R. J. Mirchel, B. J. Gaffney, H. D. Grimes, C. Kang

Date :   05 Jun 06 (Deposition) - 11 Oct 06 (Release) - 28 Dec 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.40

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Iron, Dioxygenase, Metal-Binding, Oxidoreductase, Oxylipin Biosynthesis, Soybean Lipoxygenase-D, Fatty Acid Biosynthesis, Lipid Synthesis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   B. Youn, G. E. Sellhorn, R. J. Mirchel, B. J. Gaffney, H. D. Grimes, C. Kang
Crystal Structures Of Vegetative Soybean Lipoxygenase Vlx-B And Vlx-D, And Comparisons With Seed Isoforms Lox-1 And Lox-3.
Proteins V. 65 1008 2006
PubMed-ID: 17022084 | Reference-DOI: 10.1002/PROT.21182

Molecule 1 - SEED LIPOXYGENASE
	Chains	:	A, B
	EC Number	:	1.13.11.12
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Organism Common	:	SOYBEAN
	Organism Scientific	:	GLYCINE MAX
	Organism Taxid	:	3847
	Synonym	:	VEGETATIVE LIPOXYGENASE-D

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 2)

No.	Name	Count	Type	Full Name
1	FE	2	Ligand/Ion	FE (III) ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	FE	-1	Ligand/Ion	FE (III) ION

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	FE	-1	Ligand/Ion	FE (III) ION

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:525 , HIS A:530 , HIS A:716 , ASN A:720 , ILE A:864	BINDING SITE FOR RESIDUE FE A 901
2	AC2	SOFTWARE	HIS B:1525 , HIS B:1530 , HIS B:1716 , ASN B:1720 , ILE B:1864	BINDING SITE FOR RESIDUE FE B1901

(no "SS Bond" information available for 2IUK)

Asymmetric Unit

No.	Residues
1	Phe A:389	-	Pro A:390
2	Phe B:1389	-	Pro B:1390
3	Leu B:1449	-	Pro B:1450
4	Ala B:1623	-	Pro B:1624

(no "SAP(SNP)/Variant" information available for 2IUK)

Asymmetric Unit (4, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PLAT	PS50095	PLAT domain profile.	LOXX_SOYBN	44-171	2	A:54-171 B:1054-1171
2	LIPOXYGENASE_3	PS51393	Lipoxygenase iron-binding catalytic domain profile.	LOXX_SOYBN	174-864	2	A:174-864 B:1174-1864
3	LIPOXYGENASE_1	PS00711	Lipoxygenases iron-binding region signature 1.	LOXX_SOYBN	520-534	2	A:520-534 B:1520-1534
4	LIPOXYGENASE_2	PS00081	Lipoxygenases iron-binding region signature 2.	LOXX_SOYBN	547-557	2	A:547-557 B:1547-1557

Biological Unit 1 (4, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PLAT	PS50095	PLAT domain profile.	LOXX_SOYBN	44-171	1	A:54-171 -
2	LIPOXYGENASE_3	PS51393	Lipoxygenase iron-binding catalytic domain profile.	LOXX_SOYBN	174-864	1	A:174-864 -
3	LIPOXYGENASE_1	PS00711	Lipoxygenases iron-binding region signature 1.	LOXX_SOYBN	520-534	1	A:520-534 -
4	LIPOXYGENASE_2	PS00081	Lipoxygenases iron-binding region signature 2.	LOXX_SOYBN	547-557	1	A:547-557 -

Biological Unit 2 (4, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PLAT	PS50095	PLAT domain profile.	LOXX_SOYBN	44-171	1	- B:1054-1171
2	LIPOXYGENASE_3	PS51393	Lipoxygenase iron-binding catalytic domain profile.	LOXX_SOYBN	174-864	1	- B:1174-1864
3	LIPOXYGENASE_1	PS00711	Lipoxygenases iron-binding region signature 1.	LOXX_SOYBN	520-534	1	- B:1520-1534
4	LIPOXYGENASE_2	PS00081	Lipoxygenases iron-binding region signature 2.	LOXX_SOYBN	547-557	1	- B:1547-1557

(no "Exon" information available for 2IUK)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:835
 aligned with LOXX_SOYBN | P24095 from UniProtKB/Swiss-Prot  Length:864

    Alignment length:857
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757       767       777       787       797       807       817       827       837       847       857       
          LOXX_SOYBN      8 GQKIKGTVVLMPKNVLDFNAITSIGKGGVIDTATGILGQGVSLVGGVIDTATSFLGRNISMQLISATQTDGSGNGKVGKEVYLEKHLPTLPTLGARQDAFSIFFEWDASFGIPGAFYIKNFMTDEFFLVSVKLEDIPNHGTIEFVCNSWVYNFRSYKKNRIFFVNDTYLPSATPAPLLKYRKEELEVLRGDGTGKRKDFDRIYDYDVYNDLGNPDGGDPRPILGGSSIYPYPRRVRTGRERTRTDPNSEKPGEVYVPRDENFGHLKSSDFLTYGIKSLSHDVIPLFKSAIFQLRVTSSEFESFEDVRSLYEGGIKLPTDILSQISPLPALKEIFRTDGENVLQFPPPHVAKVSKSGWMTDEEFAREVIAGVNPNVIRRLQEFPPKSTLDPTLYGDQTSTITKEQLEINMGGVTVEEALSTQRLFILDYQDAFIPYLTRINSLPTAKAYATRTILFLKDDGTLKPLAIELSKPHPDGDNLGPESIVVLPATEGVDSTIWLLAKAHVIVNDSGYHQLVSHWLNTHAVMEPFAIATNRHLSVLHPIYKLLYPHYRDTININGLARQSLINADGIIEKSFLPGKYSIEMSSSVYKNWVFTDQALPADLVKRGLAIEDPSAPHGLRLVIEDYPYAVDGLEIWDAIKTWVHEYVSLYYPTDAAVQQDTELQAWWKEAVEKGHGDLKEKPWWPKMQTTEDLIQSCSIIVWTASALHAAVNFGQYPYGGLILNRPTLARRFIPAEGTPEYDEMVKNPQKAYLRTITPKFETLIDLSVIEILSRHASDEIYLGERETPNWTTDKKALEAFKRFGSKLTGIEGKINARNSDPSLRNRTGPVQLPYTLLHRSSEEGLTFKGIPNSISI  864
               SCOP domains d2iuka1 A:8-175 automate                      d matches                                                                                                                 d2iuka2 A:176-864 automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 2iukA01 A:8-175 Lipoxyge                      nase-1                                                                                                                    2iukA02 A:176-272 Lipoxygenase-1; Domain 2                                                       2iukA03 A:273-361 Lipoxygenase-1; Domain 3                                               2iukA04 A:362-497  [code=3.10.450.60, no name defined]                                                                                  2iukA05 A:498-863 Lipoxygenase-1; Domain 5                                                                                                                                                                                                                                                                                                                                    - CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeee.hhhhhhhhh..----------------------...hhhhh....eeeeeeeeeee.....eeeeeeee..eee..........eeeeeee........eeeeeeee.....eeeeeeeee.......eeeeeeeee..hhhh...eeee..........hhhhhhhhhhhhhhhhh..............ee.......hhhh................ee.....................hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhh.....ee.hhhhhhhhh...............ee................hhhhhhhhhhhh......ee..........hhhhhh......hhhhhhhhh...hhhhhhhh..eeeeehhhhhh.hhhhhhh.......eeeeeeee.....eeeeeeeeee..........eeeee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhh.hhhhhhhhhhhhhh..hhhhhhhhhhhhhh..eee.......eee....hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh.hhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhh......................... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------------------------------PLAT  PDB: A:54-171 UniProt: 44-171                                                                                             --LIPOXYGENASE_3  PDB: A:174-864 UniProt: 174-864                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LIPOXYGENASE_1 ------------LIPOXYGENAS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2iuk A    8 GQKIKGTVVLMPKNVLDFNAITSI----------------------VIDTATSFLGRNISMQLISATQTDGSGNGKVGKEVYLEKHLPTLPTLGARQDAFSIFFEWDASFGIPGAFYIKNFMTDEFFLVSVKLEDIPNHGTIEFVCNSWVYNFRSYKKNRIFFVNDTYLPSATPAPLLKYRKEEFEVLRGDGTGKRKDFDRIYDYDVYNDLGNPDGGDPRPILGGCSIYPYPLRVRTGRERTRTDPNSEKPGEVYVPRDENFGHLKSSDFLTYGIKSLSHDVIPLFKSAIFQLRVTSSEFESFEDVRSLYEGGIKLPTDILSQISPLPALKEIFRTDGENVLQFPPPHVAKVSKSGVMTDEEFAREVIAGVNPNVIRRLQEFPPKSTLDPTLYGDQTSTITKEQLEINMGGVTVEEALSTQRLFILDYQDAFIPYLTRINSLPTAKAYATRTILFLKDDGTLKPLAIELSKPHPDGDNLGPESIVVLPATEGVDSTIWLLAKAHVIVNDSGYHQLVSHWLNTHAVMEPFAIATNRHLSVLHPIYKLLYPHYRDTININGLARQSLINADGIIEKSFLPGKYSIEMSSSVYKNWVFTHQALPADLVKRGLAIEDPSAPHGLRLVIEDYPYAVDGLEIWDAIKTWVHEYVSLYYPTDAAVQQDTELQAWWKEAVEKGHGDLKEKPWWPKKQTTEDLIQSCSIIVWTASALHAAVNFGQYPYGGLILNRPTLARRFIPAEGTPEYDEMVKNPQKAYLRTITPKFETLIDLSVIEILSRHASDEIYLGERETPNWTTDKKALEAFKRFGSKLTGIEGKINARNSDPSLRNRTGPVQLPYTLLHRSSEEGLTFKGIPNSISI  864
                                    17        27   |     -         -      | 57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757       767       777       787       797       807       817       827       837       847       857       
                                                  31                     54

Chain B from PDB  Type:PROTEIN  Length:835
 aligned with LOXX_SOYBN | P24095 from UniProtKB/Swiss-Prot  Length:864

    Alignment length:857
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757       767       777       787       797       807       817       827       837       847       857       
          LOXX_SOYBN      8 GQKIKGTVVLMPKNVLDFNAITSIGKGGVIDTATGILGQGVSLVGGVIDTATSFLGRNISMQLISATQTDGSGNGKVGKEVYLEKHLPTLPTLGARQDAFSIFFEWDASFGIPGAFYIKNFMTDEFFLVSVKLEDIPNHGTIEFVCNSWVYNFRSYKKNRIFFVNDTYLPSATPAPLLKYRKEELEVLRGDGTGKRKDFDRIYDYDVYNDLGNPDGGDPRPILGGSSIYPYPRRVRTGRERTRTDPNSEKPGEVYVPRDENFGHLKSSDFLTYGIKSLSHDVIPLFKSAIFQLRVTSSEFESFEDVRSLYEGGIKLPTDILSQISPLPALKEIFRTDGENVLQFPPPHVAKVSKSGWMTDEEFAREVIAGVNPNVIRRLQEFPPKSTLDPTLYGDQTSTITKEQLEINMGGVTVEEALSTQRLFILDYQDAFIPYLTRINSLPTAKAYATRTILFLKDDGTLKPLAIELSKPHPDGDNLGPESIVVLPATEGVDSTIWLLAKAHVIVNDSGYHQLVSHWLNTHAVMEPFAIATNRHLSVLHPIYKLLYPHYRDTININGLARQSLINADGIIEKSFLPGKYSIEMSSSVYKNWVFTDQALPADLVKRGLAIEDPSAPHGLRLVIEDYPYAVDGLEIWDAIKTWVHEYVSLYYPTDAAVQQDTELQAWWKEAVEKGHGDLKEKPWWPKMQTTEDLIQSCSIIVWTASALHAAVNFGQYPYGGLILNRPTLARRFIPAEGTPEYDEMVKNPQKAYLRTITPKFETLIDLSVIEILSRHASDEIYLGERETPNWTTDKKALEAFKRFGSKLTGIEGKINARNSDPSLRNRTGPVQLPYTLLHRSSEEGLTFKGIPNSISI  864
               SCOP domains d2iukb1 B:1008-1175 auto                      mated matches                                                                                                             d2iukb2 B:1176-1864 automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains 2iukB01 B:1008-1175 Lipo                      xygenase-1                                                                                                                2iukB02 B:1176-1272 Lipoxygenase-1; Domain 2                                                     2iukB03 B:1273-1361 Lipoxygenase-1; Domain 3                                             2iukB04 B:1362-1497  [code=3.10.450.60, no name defined]                                                                                2iukB05 B:1498-1863 Lipoxygenase-1; Domain 5                                                                                                                                                                                                                                                                                                                                  - CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeee.hhh........----------------------............eeeeeee...............ee..eee..........eeeeeee........eeeeeeee.....eeeeeeeeeee...eeeeeeeeeee.hhhhh...eeee.....hhhhh...hhhhhhhhhhhhhh..............ee.......hhhh................ee.....................hhhhh.........hhhhhhhhhhhhhhhhhhhhh..........hhhhhhh.....ee.........................ee.........hhhhhh.hhhhhhhh..........ee..........hhhhhh......hhhhhhhhh...hhhhhhhhh.eeee.hhhhhhhhhhhhh........eeeeeeee.....eeeeeeeeeee........eeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhh.hhhhhhhhhhhhhh..hhhhhhhhhhhhhh..eee.......eee....hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh.hhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh............................. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------------------------------PLAT  PDB: B:1054-1171 UniProt: 44-171                                                                                          --LIPOXYGENASE_3  PDB: B:1174-1864 UniProt: 174-864                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LIPOXYGENASE_1 ------------LIPOXYGENAS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2iuk B 1008 GQKIKGTVVLMPKNVLDFNAITSI----------------------VIDTATSFLGRNISMQLISATQTDGSGNGKVGKEVYLEKHLPTLPTLGARQDAFSIFFEWDASFGIPGAFYIKNFMTDEFFLVSVKLEDIPNHGTIEFVCNSWVYNFRSYKKNRIFFVNDTYLPSATPAPLLKYRKEEFEVLRGDGTGKRKDFDRIYDYDVYNDLGNPDGGDPRPILGGCSIYPYPLRVRTGRERTRTDPNSEKPGEVYVPRDENFGHLKSSDFLTYGIKSLSHDVIPLFKSAIFQLRVTSSEFESFEDVRSLYEGGIKLPTDILSQISPLPALKEIFRTDGENVLQFPPPHVAKVSKSGVMTDEEFAREVIAGVNPNVIRRLQEFPPKSTLDPTLYGDQTSTITKEQLEINMGGVTVEEALSTQRLFILDYQDAFIPYLTRINSLPTAKAYATRTILFLKDDGTLKPLAIELSKPHPDGDNLGPESIVVLPATEGVDSTIWLLAKAHVIVNDSGYHQLVSHWLNTHAVMEPFAIATNRHLSVLHPIYKLLYPHYRDTININGLARQSLINADGIIEKSFLPGKYSIEMSSSVYKNWVFTHQALPADLVKRGLAIEDPSAPHGLRLVIEDYPYAVDGLEIWDAIKTWVHEYVSLYYPTDAAVQQDTELQAWWKEAVEKGHGDLKEKPWWPKKQTTEDLIQSCSIIVWTASALHAAVNFGQYPYGGLILNRPTLARRFIPAEGTPEYDEMVKNPQKAYLRTITPKFETLIDLSVIEILSRHASDEIYLGERETPNWTTDKKALEAFKRFGSKLTGIEGKINARNSDPSLRNRTGPVQLPYTLLHRSSEEGLTFKGIPNSISI 1864
                                  1017      1027   |     -         -      1057      1067      1077      1087      1097      1107      1117      1127      1137      1147      1157      1167      1177      1187      1197      1207      1217      1227      1237      1247      1257      1267      1277      1287      1297      1307      1317      1327      1337      1347      1357      1367      1377      1387      1397      1407      1417      1427      1437      1447      1457      1467      1477      1487      1497      1507      1517      1527      1537      1547      1557      1567      1577      1587      1597      1607      1617      1627      1637      1647      1657      1667      1677      1687      1697      1707      1717      1727      1737      1747      1757      1767      1777      1787      1797      1807      1817      1827      1837      1847      1857       
                                                1031                   1054

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: Lipoxigenase (27)

Superfamily: Lipoxigenase (27)

Family: Plant lipoxigenases (25)

Protein domain: automated matches (2)

Soybean (Glycine max) [TaxId: 3847] (2)

1a	d2iuka2	A:176-864
1b	d2iukb2	B:1176-1864

Class: All beta proteins (24004)

Fold: Lipase/lipooxygenase domain (PLAT/LH2 domain) (47)

Superfamily: Lipase/lipooxygenase domain (PLAT/LH2 domain) (47)

Family: automated matches (8)

Protein domain: automated matches (8)

Soybean (Glycine max) [TaxId: 3847] (2)

2a	d2iuka1	A:8-175
2b	d2iukb1	B:1008-1175

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Roll (3276)

Topology: Nuclear Transport Factor 2; Chain: A, (517)

Homologous Superfamily: [code=3.10.450.60, no name defined] (26)

Soybean (Glycine max) (24)

1a	2iukA04	A:362-497
1b	2iukB04	B:1362-1497

Class: Few Secondary Structures (1120)

Architecture: Irregular (1120)

Topology: Lipoxygenase-1; domain 2 (24)

Homologous Superfamily: Lipoxygenase-1; Domain 2 (24)

Soybean (Glycine max) (24)

2a	2iukA02	A:176-272
2b	2iukB02	B:1176-1272

Topology: Lipoxygenase-1; domain 3 (24)

Homologous Superfamily: Lipoxygenase-1; Domain 3 (24)

Soybean (Glycine max) (24)

3a	2iukA03	A:273-361
3b	2iukB03	B:1273-1361

Class: Mainly Alpha (13335)

Architecture: Up-down Bundle (3216)

Topology: Lipoxygenase-1; domain 5 (26)

Homologous Superfamily: Lipoxygenase-1; Domain 5 (26)

Soybean (Glycine max) (24)

4a	2iukA05	A:498-863
4b	2iukB05	B:1498-1863

Class: Mainly Beta (13760)

Architecture: Sandwich (5577)

Topology: Lipoxygenase-1 (46)

Homologous Superfamily: Lipoxygenase-1 (44)

Soybean (Glycine max) (24)

5a	2iukA01	A:8-175
5b	2iukB01	B:1008-1175

(no "Pfam Domain" information available for 2IUK)

Asymmetric Unit(hide GO term definitions)

Chain A,B (LOXX_SOYBN | P24095)

molecular function
	GO:0051213	dioxygenase activity	Catalysis of an oxidation-reduction (redox) reaction in which both atoms of oxygen from one molecule of O2 are incorporated into the (reduced) product(s) of the reaction. The two atoms of oxygen may be distributed between two different products.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor.
biological process
	GO:0006633	fatty acid biosynthetic process	The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.
	GO:0006631	fatty acid metabolic process	The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis.
	GO:0006629	lipid metabolic process	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0031408	oxylipin biosynthetic process	The chemical reactions and pathways resulting in the formation of any oxylipin, any of a group of biologically active compounds formed by oxidative metabolism of polyunsaturated fatty acids.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Asymmetric Unit
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	Sites
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	Cis Peptide Bonds
		Ala B:1623 - Pro B:1624	[ RasMol ]
		Leu B:1449 - Pro B:1450	[ RasMol ]
		Phe A:389 - Pro A:390	[ RasMol ]
		Phe B:1389 - Pro B:1390	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
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	2iuk
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		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
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	LOXX_SOYBN \| P24095
		Comparative Protein Structure Models	:	ModBase
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		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

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	1.13.11.12
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

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	(no 'MIM ID' available)
		Disease Information	:	OMIM

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		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
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	LOXX_SOYBN \| P24095
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

(no "Entries Sharing at Least One Protein Chain" available for 2IUK)

(no "Related Entries Specified in the PDB File" available for 2IUK)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 2)

Sites (2, 2)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (4, 8)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (2, 4)

CATH Domains (5, 10)

Pfam Domains (0, 0)

Gene Ontology (10, 10)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File