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| Title | CRYSTAL STRUCTURE OF SOYBEAN LIPOXYGENASE-D | |
| Keywords | IRON, DIOXYGENASE, METAL-BINDING, OXIDOREDUCTASE, OXYLIPIN BIOSYNTHESIS, SOYBEAN LIPOXYGENASE-D, FATTY ACID BIOSYNTHESIS, LIPID SYNTHESIS | |
| Experiment | X-ray diffraction | |
| Number of Models | 1 |
| Database | ID code | Status | Coordinate files | ||
| Header | Asymmetric unit | Biological unit | |||
| PDB | 2IUK | released | available | available | Quaternary Structure Server |
| Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
|---|---|---|---|---|---|---|
| 1 | Protein | SEED LIPOXYGENASE | A | 835 | 6649 | 0 |
| 2 | Protein | SEED LIPOXYGENASE | B | 835 | 6649 | 0 |
| 3 | Ligand | SEED LIPOXYGENASE | A | 1 | 0 | 1 |
| 4 | Ligand | SEED LIPOXYGENASE | B | 1 | 0 | 1 |
| 5 | Water | 234 | 0 | 234 | ||
| total | 1906 | 13298 | 236 |
| Unit 1 | GLY8 GLN9 LYS10 ILE11 LYS12 GLY13 THR14 VAL15 VAL16 LEU17 MET18 PRO19 LYS20 ASN21 VAL22 LEU23 ASP24 PHE25 ASN26 ALA27 ILE28 THR29 SER30 ILE31 VAL54 ILE55 ASP56 THR57 ALA58 THR59 SER60 PHE61 LEU62 GLY63 ARG64 ASN65 ILE66 SER67 MET68 GLN69 LEU70 ILE71 SER72 ALA73 THR74 GLN75 THR76 ASP77 GLY78 SER79 GLY80 ASN81 GLY82 LYS83 VAL84 GLY85 LYS86 GLU87 VAL88 TYR89 LEU90 GLU91 LYS92 HIS93 LEU94 PRO95 THR96 LEU97 PRO98 THR99 LEU100 GLY101 ALA102 ARG103 GLN104 ASP105 ALA106 PHE107 SER108 ILE109 PHE110 PHE111 GLU112 TRP113 ASP114 ALA115 SER116 PHE117 GLY118 ILE119 PRO120 GLY121 ALA122 PHE123 TYR124 ILE125 LYS126 ASN127 PHE128 MET129 THR130 ASP131 GLU132 PHE133 PHE134 LEU135 VAL136 SER137 VAL138 LYS139 LEU140 GLU141 ASP142 ILE143 PRO144 ASN145 HIS146 GLY147 THR148 ILE149 GLU150 PHE151 VAL152 CYS153 ASN154 SER155 TRP156 VAL157 TYR158 ASN159 PHE160 ARG161 SER162 TYR163 LYS164 LYS165 ASN166 ARG167 ILE168 PHE169 PHE170 VAL171 ASN172 ASP173 THR174 TYR175 LEU176 PRO177 SER178 ALA179 THR180 PRO181 ALA182 PRO183 LEU184 LEU185 LYS186 TYR187 ARG188 LYS189 GLU190 GLU191 PHE192 GLU193 VAL194 LEU195 ARG196 GLY197 ASP198 GLY199 THR200 GLY201 LYS202 ARG203 LYS204 ASP205 PHE206 ASP207 ARG208 ILE209 TYR210 ASP211 TYR212 ASP213 VAL214 TYR215 ASN216 ASP217 LEU218 GLY219 ASN220 PRO221 ASP222 GLY223 GLY224 ASP225 PRO226 ARG227 PRO228 ILE229 LEU230 GLY231 GLY232 CYS233 SER234 ILE235 TYR236 PRO237 TYR238 PRO239 LEU240 ARG241 VAL242 ARG243 THR244 GLY245 ARG246 GLU247 ARG248 THR249 ARG250 THR251 ASP252 PRO253 ASN254 SER255 GLU256 LYS257 PRO258 GLY259 GLU260 VAL261 TYR262 VAL263 PRO264 ARG265 ASP266 GLU267 ASN268 PHE269 GLY270 HIS271 LEU272 LYS273 SER274 SER275 ASP276 PHE277 LEU278 THR279 TYR280 GLY281 ILE282 LYS283 SER284 LEU285 SER286 HIS287 ASP288 VAL289 ILE290 PRO291 LEU292 PHE293 LYS294 SER295 ALA296 ILE297 PHE298 GLN299 LEU300 ARG301 VAL302 THR303 SER304 SER305 GLU306 PHE307 GLU308 SER309 PHE310 GLU311 ASP312 VAL313 ARG314 SER315 LEU316 TYR317 GLU318 GLY319 GLY320 ILE321 LYS322 LEU323 PRO324 THR325 ASP326 ILE327 LEU328 SER329 GLN330 ILE331 SER332 PRO333 LEU334 PRO335 ALA336 LEU337 LYS338 GLU339 ILE340 PHE341 ARG342 THR343 ASP344 GLY345 GLU346 ASN347 VAL348 LEU349 GLN350 PHE351 PRO352 PRO353 PRO354 HIS355 VAL356 ALA357 LYS358 VAL359 SER360 LYS361 SER362 GLY363 VAL364 MET365 THR366 ASP367 GLU368 GLU369 PHE370 ALA371 ARG372 GLU373 VAL374 ILE375 ALA376 GLY377 VAL378 ASN379 PRO380 ASN381 VAL382 ILE383 ARG384 ARG385 LEU386 GLN387 GLU388 PHE389 PRO390 PRO391 LYS392 SER393 THR394 LEU395 ASP396 PRO397 THR398 LEU399 TYR400 GLY401 ASP402 GLN403 THR404 SER405 THR406 ILE407 THR408 LYS409 GLU410 GLN411 LEU412 GLU413 ILE414 ASN415 MET416 GLY417 GLY418 VAL419 THR420 VAL421 GLU422 GLU423 ALA424 LEU425 SER426 THR427 GLN428 ARG429 LEU430 PHE431 ILE432 LEU433 ASP434 TYR435 GLN436 ASP437 ALA438 PHE439 ILE440 PRO441 TYR442 LEU443 THR444 ARG445 ILE446 ASN447 SER448 LEU449 PRO450 THR451 ALA452 LYS453 ALA454 TYR455 ALA456 THR457 ARG458 THR459 ILE460 LEU461 PHE462 LEU463 LYS464 ASP465 ASP466 GLY467 THR468 LEU469 LYS470 PRO471 LEU472 ALA473 ILE474 GLU475 LEU476 SER477 LYS478 PRO479 HIS480 PRO481 ASP482 GLY483 ASP484 ASN485 LEU486 GLY487 PRO488 GLU489 SER490 ILE491 VAL492 VAL493 LEU494 PRO495 ALA496 THR497 GLU498 GLY499 VAL500 ASP501 SER502 THR503 ILE504 TRP505 LEU506 LEU507 ALA508 LYS509 ALA510 HIS511 VAL512 ILE513 VAL514 ASN515 ASP516 SER517 GLY518 TYR519 HIS520 GLN521 LEU522 VAL523 SER524 HIS525 TRP526 LEU527 ASN528 THR529 HIS530 ALA531 VAL532 MET533 GLU534 PRO535 PHE536 ALA537 ILE538 ALA539 THR540 ASN541 ARG542 HIS543 LEU544 SER545 VAL546 LEU547 HIS548 PRO549 ILE550 TYR551 LYS552 LEU553 LEU554 TYR555 PRO556 HIS557 TYR558 ARG559 ASP560 THR561 ILE562 ASN563 ILE564 ASN565 GLY566 LEU567 ALA568 ARG569 GLN570 SER571 LEU572 ILE573 ASN574 ALA575 ASP576 GLY577 ILE578 ILE579 GLU580 LYS581 SER582 PHE583 LEU584 PRO585 GLY586 LYS587 TYR588 SER589 ILE590 GLU591 MET592 SER593 SER594 SER595 VAL596 TYR597 LYS598 ASN599 TRP600 VAL601 PHE602 THR603 HIS604 GLN605 ALA606 LEU607 PRO608 ALA609 ASP610 LEU611 VAL612 LYS613 ARG614 GLY615 LEU616 ALA617 ILE618 GLU619 ASP620 PRO621 SER622 ALA623 PRO624 HIS625 GLY626 LEU627 ARG628 LEU629 VAL630 ILE631 GLU632 ASP633 TYR634 PRO635 TYR636 ALA637 VAL638 ASP639 GLY640 LEU641 GLU642 ILE643 TRP644 ASP645 ALA646 ILE647 LYS648 THR649 TRP650 VAL651 HIS652 GLU653 TYR654 VAL655 SER656 LEU657 TYR658 TYR659 PRO660 THR661 ASP662 ALA663 ALA664 VAL665 GLN666 GLN667 ASP668 THR669 GLU670 LEU671 GLN672 ALA673 TRP674 TRP675 LYS676 GLU677 ALA678 VAL679 GLU680 LYS681 GLY682 HIS683 GLY684 ASP685 LEU686 LYS687 GLU688 LYS689 PRO690 TRP691 TRP692 PRO693 LYS694 LYS695 GLN696 THR697 THR698 GLU699 ASP700 LEU701 ILE702 GLN703 SER704 CYS705 SER706 ILE707 ILE708 VAL709 TRP710 THR711 ALA712 SER713 ALA714 LEU715 HIS716 ALA717 ALA718 VAL719 ASN720 PHE721 GLY722 GLN723 TYR724 PRO725 TYR726 GLY727 GLY728 LEU729 ILE730 LEU731 ASN732 ARG733 PRO734 THR735 LEU736 ALA737 ARG738 ARG739 PHE740 ILE741 PRO742 ALA743 GLU744 GLY745 THR746 PRO747 GLU748 TYR749 ASP750 GLU751 MET752 VAL753 LYS754 ASN755 PRO756 GLN757 LYS758 ALA759 TYR760 LEU761 ARG762 THR763 ILE764 THR765 PRO766 LYS767 PHE768 GLU769 THR770 LEU771 ILE772 ASP773 LEU774 SER775 VAL776 ILE777 GLU778 ILE779 LEU780 SER781 ARG782 HIS783 ALA784 SER785 ASP786 GLU787 ILE788 TYR789 LEU790 GLY791 GLU792 ARG793 GLU794 THR795 PRO796 ASN797 TRP798 THR799 THR800 ASP801 LYS802 LYS803 ALA804 LEU805 GLU806 ALA807 PHE808 LYS809 ARG810 PHE811 GLY812 SER813 LYS814 LEU815 THR816 GLY817 ILE818 GLU819 GLY820 LYS821 ILE822 ASN823 ALA824 ARG825 ASN826 SER827 ASP828 PRO829 SER830 LEU831 ARG832 ASN833 ARG834 THR835 GLY836 PRO837 VAL838 GLN839 LEU840 PRO841 TYR842 THR843 LEU844 LEU845 HIS846 ARG847 SER848 SER849 GLU850 GLU851 GLY852 LEU853 THR854 PHE855 LYS856 GLY857 ILE858 PRO859 ASN860 SER861 ILE862 SER863 ILE864 |
| Unit 2 | GLY1008 GLN1009 LYS1010 ILE1011 LYS1012 GLY1013 THR1014 VAL1015 VAL1016 LEU1017 MET1018 PRO1019 LYS1020 ASN1021 VAL1022 LEU1023 ASP1024 PHE1025 ASN1026 ALA1027 ILE1028 THR1029 SER1030 ILE1031 VAL1054 ILE1055 ASP1056 THR1057 ALA1058 THR1059 SER1060 PHE1061 LEU1062 GLY1063 ARG1064 ASN1065 ILE1066 SER1067 MET1068 GLN1069 LEU1070 ILE1071 SER1072 ALA1073 THR1074 GLN1075 THR1076 ASP1077 GLY1078 SER1079 GLY1080 ASN1081 GLY1082 LYS1083 VAL1084 GLY1085 LYS1086 GLU1087 VAL1088 TYR1089 LEU1090 GLU1091 LYS1092 HIS1093 LEU1094 PRO1095 THR1096 LEU1097 PRO1098 THR1099 LEU1100 GLY1101 ALA1102 ARG1103 GLN1104 ASP1105 ALA1106 PHE1107 SER1108 ILE1109 PHE1110 PHE1111 GLU1112 TRP1113 ASP1114 ALA1115 SER1116 PHE1117 GLY1118 ILE1119 PRO1120 GLY1121 ALA1122 PHE1123 TYR1124 ILE1125 LYS1126 ASN1127 PHE1128 MET1129 THR1130 ASP1131 GLU1132 PHE1133 PHE1134 LEU1135 VAL1136 SER1137 VAL1138 LYS1139 LEU1140 GLU1141 ASP1142 ILE1143 PRO1144 ASN1145 HIS1146 GLY1147 THR1148 ILE1149 GLU1150 PHE1151 VAL1152 CYS1153 ASN1154 SER1155 TRP1156 VAL1157 TYR1158 ASN1159 PHE1160 ARG1161 SER1162 TYR1163 LYS1164 LYS1165 ASN1166 ARG1167 ILE1168 PHE1169 PHE1170 VAL1171 ASN1172 ASP1173 THR1174 TYR1175 LEU1176 PRO1177 SER1178 ALA1179 THR1180 PRO1181 ALA1182 PRO1183 LEU1184 LEU1185 LYS1186 TYR1187 ARG1188 LYS1189 GLU1190 GLU1191 PHE1192 GLU1193 VAL1194 LEU1195 ARG1196 GLY1197 ASP1198 GLY1199 THR1200 GLY1201 LYS1202 ARG1203 LYS1204 ASP1205 PHE1206 ASP1207 ARG1208 ILE1209 TYR1210 ASP1211 TYR1212 ASP1213 VAL1214 TYR1215 ASN1216 ASP1217 LEU1218 GLY1219 ASN1220 PRO1221 ASP1222 GLY1223 GLY1224 ASP1225 PRO1226 ARG1227 PRO1228 ILE1229 LEU1230 GLY1231 GLY1232 CYS1233 SER1234 ILE1235 TYR1236 PRO1237 TYR1238 PRO1239 LEU1240 ARG1241 VAL1242 ARG1243 THR1244 GLY1245 ARG1246 GLU1247 ARG1248 THR1249 ARG1250 THR1251 ASP1252 PRO1253 ASN1254 SER1255 GLU1256 LYS1257 PRO1258 GLY1259 GLU1260 VAL1261 TYR1262 VAL1263 PRO1264 ARG1265 ASP1266 GLU1267 ASN1268 PHE1269 GLY1270 HIS1271 LEU1272 LYS1273 SER1274 SER1275 ASP1276 PHE1277 LEU1278 THR1279 TYR1280 GLY1281 ILE1282 LYS1283 SER1284 LEU1285 SER1286 HIS1287 ASP1288 VAL1289 ILE1290 PRO1291 LEU1292 PHE1293 LYS1294 SER1295 ALA1296 ILE1297 PHE1298 GLN1299 LEU1300 ARG1301 VAL1302 THR1303 SER1304 SER1305 GLU1306 PHE1307 GLU1308 SER1309 PHE1310 GLU1311 ASP1312 VAL1313 ARG1314 SER1315 LEU1316 TYR1317 GLU1318 GLY1319 GLY1320 ILE1321 LYS1322 LEU1323 PRO1324 THR1325 ASP1326 ILE1327 LEU1328 SER1329 GLN1330 ILE1331 SER1332 PRO1333 LEU1334 PRO1335 ALA1336 LEU1337 LYS1338 GLU1339 ILE1340 PHE1341 ARG1342 THR1343 ASP1344 GLY1345 GLU1346 ASN1347 VAL1348 LEU1349 GLN1350 PHE1351 PRO1352 PRO1353 PRO1354 HIS1355 VAL1356 ALA1357 LYS1358 VAL1359 SER1360 LYS1361 SER1362 GLY1363 VAL1364 MET1365 THR1366 ASP1367 GLU1368 GLU1369 PHE1370 ALA1371 ARG1372 GLU1373 VAL1374 ILE1375 ALA1376 GLY1377 VAL1378 ASN1379 PRO1380 ASN1381 VAL1382 ILE1383 ARG1384 ARG1385 LEU1386 GLN1387 GLU1388 PHE1389 PRO1390 PRO1391 LYS1392 SER1393 THR1394 LEU1395 ASP1396 PRO1397 THR1398 LEU1399 TYR1400 GLY1401 ASP1402 GLN1403 THR1404 SER1405 THR1406 ILE1407 THR1408 LYS1409 GLU1410 GLN1411 LEU1412 GLU1413 ILE1414 ASN1415 MET1416 GLY1417 GLY1418 VAL1419 THR1420 VAL1421 GLU1422 GLU1423 ALA1424 LEU1425 SER1426 THR1427 GLN1428 ARG1429 LEU1430 PHE1431 ILE1432 LEU1433 ASP1434 TYR1435 GLN1436 ASP1437 ALA1438 PHE1439 ILE1440 PRO1441 TYR1442 LEU1443 THR1444 ARG1445 ILE1446 ASN1447 SER1448 LEU1449 PRO1450 THR1451 ALA1452 LYS1453 ALA1454 TYR1455 ALA1456 THR1457 ARG1458 THR1459 ILE1460 LEU1461 PHE1462 LEU1463 LYS1464 ASP1465 ASP1466 GLY1467 THR1468 LEU1469 LYS1470 PRO1471 LEU1472 ALA1473 ILE1474 GLU1475 LEU1476 SER1477 LYS1478 PRO1479 HIS1480 PRO1481 ASP1482 GLY1483 ASP1484 ASN1485 LEU1486 GLY1487 PRO1488 GLU1489 SER1490 ILE1491 VAL1492 VAL1493 LEU1494 PRO1495 ALA1496 THR1497 GLU1498 GLY1499 VAL1500 ASP1501 SER1502 THR1503 ILE1504 TRP1505 LEU1506 LEU1507 ALA1508 LYS1509 ALA1510 HIS1511 VAL1512 ILE1513 VAL1514 ASN1515 ASP1516 SER1517 GLY1518 TYR1519 HIS1520 GLN1521 LEU1522 VAL1523 SER1524 HIS1525 TRP1526 LEU1527 ASN1528 THR1529 HIS1530 ALA1531 VAL1532 MET1533 GLU1534 PRO1535 PHE1536 ALA1537 ILE1538 ALA1539 THR1540 ASN1541 ARG1542 HIS1543 LEU1544 SER1545 VAL1546 LEU1547 HIS1548 PRO1549 ILE1550 TYR1551 LYS1552 LEU1553 LEU1554 TYR1555 PRO1556 HIS1557 TYR1558 ARG1559 ASP1560 THR1561 ILE1562 ASN1563 ILE1564 ASN1565 GLY1566 LEU1567 ALA1568 ARG1569 GLN1570 SER1571 LEU1572 ILE1573 ASN1574 ALA1575 ASP1576 GLY1577 ILE1578 ILE1579 GLU1580 LYS1581 SER1582 PHE1583 LEU1584 PRO1585 GLY1586 LYS1587 TYR1588 SER1589 ILE1590 GLU1591 MET1592 SER1593 SER1594 SER1595 VAL1596 TYR1597 LYS1598 ASN1599 TRP1600 VAL1601 PHE1602 THR1603 HIS1604 GLN1605 ALA1606 LEU1607 PRO1608 ALA1609 ASP1610 LEU1611 VAL1612 LYS1613 ARG1614 GLY1615 LEU1616 ALA1617 ILE1618 GLU1619 ASP1620 PRO1621 SER1622 ALA1623 PRO1624 HIS1625 GLY1626 LEU1627 ARG1628 LEU1629 VAL1630 ILE1631 GLU1632 ASP1633 TYR1634 PRO1635 TYR1636 ALA1637 VAL1638 ASP1639 GLY1640 LEU1641 GLU1642 ILE1643 TRP1644 ASP1645 ALA1646 ILE1647 LYS1648 THR1649 TRP1650 VAL1651 HIS1652 GLU1653 TYR1654 VAL1655 SER1656 LEU1657 TYR1658 TYR1659 PRO1660 THR1661 ASP1662 ALA1663 ALA1664 VAL1665 GLN1666 GLN1667 ASP1668 THR1669 GLU1670 LEU1671 GLN1672 ALA1673 TRP1674 TRP1675 LYS1676 GLU1677 ALA1678 VAL1679 GLU1680 LYS1681 GLY1682 HIS1683 GLY1684 ASP1685 LEU1686 LYS1687 GLU1688 LYS1689 PRO1690 TRP1691 TRP1692 PRO1693 LYS1694 LYS1695 GLN1696 THR1697 THR1698 GLU1699 ASP1700 LEU1701 ILE1702 GLN1703 SER1704 CYS1705 SER1706 ILE1707 ILE1708 VAL1709 TRP1710 THR1711 ALA1712 SER1713 ALA1714 LEU1715 HIS1716 ALA1717 ALA1718 VAL1719 ASN1720 PHE1721 GLY1722 GLN1723 TYR1724 PRO1725 TYR1726 GLY1727 GLY1728 LEU1729 ILE1730 LEU1731 ASN1732 ARG1733 PRO1734 THR1735 LEU1736 ALA1737 ARG1738 ARG1739 PHE1740 ILE1741 PRO1742 ALA1743 GLU1744 GLY1745 THR1746 PRO1747 GLU1748 TYR1749 ASP1750 GLU1751 MET1752 VAL1753 LYS1754 ASN1755 PRO1756 GLN1757 LYS1758 ALA1759 TYR1760 LEU1761 ARG1762 THR1763 ILE1764 THR1765 PRO1766 LYS1767 PHE1768 GLU1769 THR1770 LEU1771 ILE1772 ASP1773 LEU1774 SER1775 VAL1776 ILE1777 GLU1778 ILE1779 LEU1780 SER1781 ARG1782 HIS1783 ALA1784 SER1785 ASP1786 GLU1787 ILE1788 TYR1789 LEU1790 GLY1791 GLU1792 ARG1793 GLU1794 THR1795 PRO1796 ASN1797 TRP1798 THR1799 THR1800 ASP1801 LYS1802 LYS1803 ALA1804 LEU1805 GLU1806 ALA1807 PHE1808 LYS1809 ARG1810 PHE1811 GLY1812 SER1813 LYS1814 LEU1815 THR1816 GLY1817 ILE1818 GLU1819 GLY1820 LYS1821 ILE1822 ASN1823 ALA1824 ARG1825 ASN1826 SER1827 ASP1828 PRO1829 SER1830 LEU1831 ARG1832 ASN1833 ARG1834 THR1835 GLY1836 PRO1837 VAL1838 GLN1839 LEU1840 PRO1841 TYR1842 THR1843 LEU1844 LEU1845 HIS1846 ARG1847 SER1848 SER1849 GLU1850 GLU1851 GLY1852 LEU1853 THR1854 PHE1855 LYS1856 GLY1857 ILE1858 PRO1859 ASN1860 SER1861 ILE1862 SER1863 ILE1864 |
| Unit 3 | FE901 |
| Unit 4 | FE1901 |
| Perl script: | PDBscan.pl (15 Sep 2016) |
| Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |