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Title :   CRYSTAL STRUCTURE OF 3 RESIDUES TRUNCATED VERSION OF PROTEIN NMB1012 FROM NEISSERIA MENINGITIDES

Authors :   C. Chang, H. Li, J. Abdullah, A. Joachimiak, Midwest Center For Stru Genomics (Mcsg)

Date :   16 Oct 06 (Deposition) - 14 Nov 06 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.85

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Neisseria Meningitidis Mc58, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Chang, H. Li, J. Abdullah, A. Joachimiak
Crystal Structure Of 3 Residues Truncated Version Of Protei Nmb1012 From Neisseria Meningitides
To Be Published
PubMed: search

Molecule 1 - HYPOTHETICAL PROTEIN
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG7
	Expression System Strain	:	BL21(DE3) DERIVATIVES
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	NMB1012
	Organism Scientific	:	NEISSERIA MENINGITIDIS
	Organism Taxid	:	491
	Strain	:	SEROGROUP B

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 16)

No.	Name	Count	Type	Full Name
1	CIT	2	Ligand/Ion	CITRIC ACID
2	MSE	14	Mod. Amino Acid	SELENOMETHIONINE

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:67 , GLY A:91 , ARG A:95 , HOH A:234 , ARG D:67 , TYR D:68 , TYR D:90 , GLY D:91 , ARG D:95 , HOH D:507 , HOH D:511 , HOH D:517 , HOH D:538 , HOH D:539 , HOH D:571 , HOH D:606 , HOH D:611	BINDING SITE FOR RESIDUE CIT D 501
2	AC2	SOFTWARE	ARG B:67 , GLY B:91 , ARG B:95 , HOH B:236 , GLY C:91 , ARG C:95 , HOH C:506 , HOH C:508 , HOH C:510 , HOH C:512 , HOH C:516	BINDING SITE FOR RESIDUE CIT C 502

(no "SS Bond" information available for 2IS5)

(no "Cis Peptide Bond" information available for 2IS5)

(no "SAP(SNP)/Variant" information available for 2IS5)

(no "PROSITE Motif" information available for 2IS5)

(no "Exon" information available for 2IS5)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:160
 aligned with Q7DDI9_NEIMB | Q7DDI9 from UniProtKB/TrEMBL  Length:167

    Alignment length:163
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160   
         Q7DDI9_NEIMB     1 MSDKFNQFINRVLSHEGGYANHPKDPGGETNWGITKRTAQANGYNGSMRAMTREQAISIYRKAFWERYRADQMPEAVAFQFFDACVNHGYGNAARMLQRAAGVPDDGVIGAVSLKAINSLPENDLLLRFNAERLVFYTKLGTFTSFGKGWVRRVAQNLIHASA 163
               SCOP domains d2is5a_ A: Hypothetical    protein NMB1012                                                                                                                          SCOP domains
               CATH domains 2is5A00 A:1-163 Chitosa   nase, subunit A, domain 1                                                                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh..........---...ee..eehhhhhhh.........hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2is5 A   1 ASDKFNQFINRVLSHEGGYANHP---GGETNWGITKRTAQANGYNGSmRAmTREQAISIYRKAFWERYRADQmPEAVAFQFFDACVNHGYGNAARmLQRAAGVPDDGVIGAVSLKAINSLPENDLLLRFNAERLVFYTKLGTFTSFGKGWVRRVAQNLIHASA 163
                                    10        20  |   | 30        40       |50|       60        70  |     80        90     | 100       110       120       130       140       150       160   
                                                 23  27                   48-MSE                   73-MSE                 96-MSE                                                               
                                                                             51-MSE

Chain B from PDB  Type:PROTEIN  Length:150
 aligned with Q7DDI9_NEIMB | Q7DDI9 from UniProtKB/TrEMBL  Length:167

    Alignment length:161
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161 
         Q7DDI9_NEIMB     2 SDKFNQFINRVLSHEGGYANHPKDPGGETNWGITKRTAQANGYNGSMRAMTREQAISIYRKAFWERYRADQMPEAVAFQFFDACVNHGYGNAARMLQRAAGVPDDGVIGAVSLKAINSLPENDLLLRFNAERLVFYTKLGTFTSFGKGWVRRVAQNLIHAS 162
               SCOP domains d2is5b_ B: Hypothet i    cal protein NMB1012                                                                                                                      SCOP domains
               CATH domains 2is5B00 B:2-162 Chi t    osanase, subunit A, domain 1                                                                                                             CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhh.......-.----...ee..eehhhhhhh.........hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhh..hhhhhhhhhhhhhhhhhhh.------hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2is5 B   2 SDKFNQFINRVLSHEGGYA-H----GGETNWGITKRTAQANGYNGSmRAmTREQAISIYRKAFWERYRADQmPEAVAFQFFDACVNHGYGNAARmLQRAAGVPDDGVIGAVSLKAINSLPENDLLLRFNAERLVFYTKL------GKGWVRRVAQNLIHAS 162
                                    11        |-|    |  31        41      | 51        61        71 |      81        91    |  101       111       121       131        |-     | 151       161 
                                             20 |   27                   48-MSE                   73-MSE                 96-MSE                                     140    147               
                                               22                           51-MSE

Chain C from PDB  Type:PROTEIN  Length:134
 aligned with Q7DDI9_NEIMB | Q7DDI9 from UniProtKB/TrEMBL  Length:167

    Alignment length:163
                             1                                                                                                                                                                 
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159   
         Q7DDI9_NEIMB     - -MSDKFNQFINRVLSHEGGYANHPKDPGGETNWGITKRTAQANGYNGSMRAMTREQAISIYRKAFWERYRADQMPEAVAFQFFDACVNHGYGNAARMLQRAAGVPDDGVIGAVSLKAINSLPENDLLLRFNAERLVFYTKLGTFTSFGKGWVRRVAQNLIHAS 162
               SCOP domains d2is5c_ C: Hyp                   othetical pr       otein NMB1012                                                                                                   SCOP domains
               CATH domains 2is5C00 C:0-16                   2 Chitosanas       e, subunit A, domain 1                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhh-------------------..hhhhhhhh..-------hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....---hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2is5 C   0 NASDKFNQFINRVL-------------------GITKRTAQANGY-------TREQAISIYRKAFWERYRADQmPEAVAFQFFDACVNHGYGNAARmLQRAAGVPDDGVIGAVSLKAINSLPENDLLLRFNAERLVFYTKLGTF---GKGWVRRVAQNLIHAS 162
                                     9   |     -         -   |    39    |    -  |     59        69   |    79        89      | 99       109       119       129       139   |   149       159   
                                        13                  33         44      52                   73-MSE                 96-MSE                                        143 147

Chain D from PDB  Type:PROTEIN  Length:147
 aligned with Q7DDI9_NEIMB | Q7DDI9 from UniProtKB/TrEMBL  Length:167

    Alignment length:162
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162  
         Q7DDI9_NEIMB     3 DKFNQFINRVLSHEGGYANHPKDPGGETNWGITKRTAQANGYNGSMRAMTREQAISIYRKAFWERYRADQMPEAVAFQFFDACVNHGYGNAARMLQRAAGVPDDGVIGAVSLKAINSLPENDLLLRFNAERLVFYTKLGTFTSFGKGWVRRVAQNLIHASAD 164
               SCOP domains d2is5d_ D: Hypoth  e     tical protein NMB1012                                                                                                                     SCOP domains
               CATH domains 2is5D00 D:3-164 C  h     itosanase, subunit A, domain 1                                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhh......--.-----..ee..eehhhhhhh.........hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.--------hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2is5 D   3 DKFNQFINRVLSHEGGY--H-----GETNWGITKRTAQANGYNGSmRAmTREQAISIYRKAFWERYRADQmPEAVAFQFFDACVNHGYGNAARmLQRAAGVPDDGVIGAVSLKAINSLPENDLLLRFNAERLVFYTKL--------GWVRRVAQNLIHASAD 164
                                    12      | 22     |  32        42     |  52        62        72|       82        92   |   102       112       122       132       | -      |152       162  
                                           19 22    28                  48-MSE                   73-MSE                 96-MSE                                     140      149               
                                                                           51-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Lysozyme-like (1361)

Superfamily: Lysozyme-like (1361)

Family: NMB1012-like (4)

Protein domain: Hypothetical protein NMB1012 (2)

Neisseria meningitidis [TaxId: 487] (2)

1a	d2is5a_	A:
1b	d2is5b_	B:
1c	d2is5c_	C:
1d	d2is5d_	D:

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Up-down Bundle (3216)

Topology: Chitosanase, subunit A; domain 1 (6)

Homologous Superfamily: Chitosanase, subunit A, domain 1 (6)

Neisseria meningitidis serogroup b. Organism_taxid: 491. Strain: serogroup b. (1)

1a	2is5B00	B:2-162
1b	2is5D00	D:3-164
1c	2is5A00	A:1-163
1d	2is5C00	C:0-162

(no "Pfam Domain" information available for 2IS5)

Asymmetric/Biological Unit(hide GO term definitions)

(no "Gene Ontology" information available for 2IS5)

Asymmetric/Biological Unit
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