2HI8 - JenaLib

Asymmetric Unit (20, 20)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	NAG X:2 , THR X:134 , GLU X:137 , LYS X:138 , ASN X:141 , HOH X:1256	BINDING SITE FOR RESIDUE NAG X 1
02	AC2	SOFTWARE	NAG X:1	BINDING SITE FOR RESIDUE NAG X 2
03	AC3	SOFTWARE	TRP X:299 , SER X:333 , SER X:336 , CYS X:341 , ASN X:360 , HOH X:1318	BINDING SITE FOR RESIDUE BR X 1001
04	AC4	SOFTWARE	LYS X:249 , HOH X:1306	BINDING SITE FOR RESIDUE BR X 1002
05	AC5	SOFTWARE	LEU X:225 , HOH X:1310 , HOH X:1406	BINDING SITE FOR RESIDUE BR X 1003
06	AC6	SOFTWARE	ARG X:236 , ASN X:241 , ARG X:242	BINDING SITE FOR RESIDUE BR X 1004
07	AC7	SOFTWARE	HOH X:1090 , HOH X:1116 , HOH X:1211 , HOH X:1286	BINDING SITE FOR RESIDUE BR X 1005
08	AC8	SOFTWARE	CYS P:1 , TRP X:179 , TRP X:180 , TYR X:340	BINDING SITE FOR RESIDUE BR X 1006
09	AC9	SOFTWARE	THR X:219 , LYS X:253 , HOH X:1154	BINDING SITE FOR RESIDUE BR X 1007
10	BC1	SOFTWARE	ARG X:224 , ASP X:368	BINDING SITE FOR RESIDUE BR X 1008
11	BC2	SOFTWARE	PRO X:202 , ASP X:203 , HIS X:204	BINDING SITE FOR RESIDUE BR X 1009
12	BC3	SOFTWARE	GLN X:262 , GLY X:263 , HIS X:337 , HOH X:1195 , HOH X:1340	BINDING SITE FOR RESIDUE BR X 1010
13	BC4	SOFTWARE	ALA X:283 , PHE X:284 , HOH X:1335	BINDING SITE FOR RESIDUE BR X 1011
14	BC5	SOFTWARE	ASN X:212 , PRO X:354 , HOH X:1114 , HOH X:1370	BINDING SITE FOR RESIDUE BR X 1012
15	BC6	SOFTWARE	SER X:196 , THR X:197 , HIS X:200 , ARG X:201 , HOH X:1228	BINDING SITE FOR RESIDUE BR X 1013
16	BC7	SOFTWARE	LEU X:239 , HIS X:240 , ARG X:242 , HOH X:1188	BINDING SITE FOR RESIDUE BR X 1014
17	BC8	SOFTWARE	GLU X:314	BINDING SITE FOR RESIDUE BR X 1015
18	BC9	SOFTWARE	GLU X:130 , ASN X:293 , GLY X:296 , ALA X:298 , GLU X:300 , HOH X:1048	BINDING SITE FOR RESIDUE CA X 1016
19	CC1	SOFTWARE	ASN X:259 , ILE X:260 , ASP X:273 , PHE X:275 , HOH X:1024 , HOH X:1027	BINDING SITE FOR RESIDUE CA X 1017
20	CC2	SOFTWARE	TRP X:299 , SER X:333 , SER X:336 , CYS X:341 , ASN X:360 , HOH X:1318	BINDING SITE FOR RESIDUE CL X 1018

SS Bonds (3, 3)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (13, 13)

Asymmetric/Biological Unit (13, 13)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_016053	S	155	P	SUMF1_HUMAN	Disease (MSD)	137852850	X	S	155	P
02	UniProt	VAR_019051	A	177	P	SUMF1_HUMAN	Disease (MSD)	---	X	A	177	P
03	UniProt	VAR_042602	W	179	S	SUMF1_HUMAN	Disease (MSD)	757323641	X	W	179	S
04	UniProt	VAR_016054	C	218	Y	SUMF1_HUMAN	Disease (MSD)	137852854	X	C	218	Y
05	UniProt	VAR_019052	R	224	W	SUMF1_HUMAN	Disease (MSD)	759888604	X	R	224	W
06	UniProt	VAR_019053	N	259	I	SUMF1_HUMAN	Disease (MSD)	764215221	X	N	259	I
07	UniProt	VAR_019054	P	266	L	SUMF1_HUMAN	Disease (MSD)	763243827	X	P	266	L
08	UniProt	VAR_016055	A	279	V	SUMF1_HUMAN	Disease (MSD)	137852849	X	A	279	V
09	UniProt	VAR_016056	C	336	R	SUMF1_HUMAN	Disease (MSD)	137852848	X	S	336	R
10	UniProt	VAR_016057	R	345	C	SUMF1_HUMAN	Disease (MSD)	137852852	X	R	345	C
11	UniProt	VAR_016058	A	348	P	SUMF1_HUMAN	Disease (MSD)	137852853	X	A	348	P
12	UniProt	VAR_016059	R	349	Q	SUMF1_HUMAN	Disease (MSD)	137852847	X	R	349	Q
13	UniProt	VAR_016060	R	349	W	SUMF1_HUMAN	Disease (MSD)	137852846	X	R	349	W

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

PROSITE Motifs (0, 0)

Exons (9, 9)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain P from PDB  Type:PROTEIN  Length:5
 aligned with ARSA_HUMAN | P15289 from UniProtKB/Swiss-Prot  Length:507

    Alignment length:5
           ARSA_HUMAN    69 CTPSR  73
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..... Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                 2hi8 P   1 CTPSR   5

Chain X from PDB  Type:PROTEIN  Length:274
 aligned with SUMF1_HUMAN | Q8NBK3 from UniProtKB/Swiss-Prot  Length:374

    Alignment length:286
                                    95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365      
          SUMF1_HUMAN    86 LAHSKMVPIPAGVFTMGTDDPQIKQDGEAPARRVTIDAFYMDAYEVSNTEFEKFVNSTGYLTEAEKFGDSFVFEGMLSEQVKTNIQQAVAAAPWWLPVKGANWRHPEGPDSTILHRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLHNRLFPWGNKLQPKGQHYANIWQGEFPVTNTGEDGFQGTAPVDAFPPNGYGLYNIVGNAWEWTSDWWTVHHSVEETLNPKGPPSGKDRVKKGGSYMCHRSYCYRYRCAARSQNTPDSSASNLGFRCAADRLP 371
               SCOP domains d2hi8x_ X: automated matches                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 2hi8X00 X:86-371 paralog of FGE (formylglycine-generating enzyme)                                                                                                                                                                                                                              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee..eeeee......hhhhh....eeeee..eeee....hhhhhhhhhhhhh..hhhhhhheeeee.hhh------------.....eeeee.........................hhhhhhhhhhhh.....hhhhhhhhhhh.............hhhhh...........................................eeeeeee.........ee..........eeee...................eee........ee...ee.... Sec.struct. author
             SAPs(SNPs) (1) ---------------------------------------------------------------------P---------------------P-S--------------------------------------Y-----W----------------------------------I------L------------V--------------------------------------------------------R--------C--PQ---------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------W---------------------- SAPs(SNPs) (2)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1.1a Exon 1.2  PDB: X:91-148 UniProt: 91-148                   Exon 1.3  PDB: X:149-162 Exon 1.4  PDB: X:175-201    ----------------------------------------Exon 1.6  PDB: X:242-280               Exon 1.7  PDB: X:281-318              Exon 1.8            Exon 1.9d  PDB: X:339-371         Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------------------------------------------------------------Exon 1.5  PDB: X:201-242 UniProt: 201-242 --------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 2hi8 X  86 LAHSKMVPIPAGVFTMGTDDPQIKQDGEAPARRVTIDAFYMDAYEVSNTEFEKFVNSTGYLTEAEKFGDSFVFEGML------------AAAPWWLPVKGANWRHPEGPDSTILHRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLHNRLFPWGNKLQPKGQHYANIWQGEFPVTNTGEDGFQGTAPVDAFPPNGYGLYNIVGNAWEWTSDWWTVHHSVEETLNPKGPPSGKDRVKKGGSYMSHRSYCYRYRCAARSQNTPDSSASNLGFRCAADRLP 371
                                    95       105       115       125       135       145       155      |  -       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365      
                                                                                                      162          175

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (1, 1)

Pfam Domains (0, 0)

Gene Ontology (19, 23)

Asymmetric/Biological Unit(hide GO term definitions)

Chain P (ARSA_HUMAN | P15289)

molecular function
	GO:0004065	arylsulfatase activity	Catalysis of the reaction: a phenol sulfate + H2O = a phenol + sulfate.
	GO:0005509	calcium ion binding	Interacting selectively and non-covalently with calcium ions (Ca2+).
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0004098	cerebroside-sulfatase activity	Catalysis of the reaction: a cerebroside 3-sulfate + H2O = a cerebroside + sulfate.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0008484	sulfuric ester hydrolase activity	Catalysis of the reaction: RSO-R' + H2O = RSOOH + R'H. This reaction is the hydrolysis of any sulfuric ester bond, any ester formed from sulfuric acid, O=SO(OH)2.
biological process
	GO:0006687	glycosphingolipid metabolic process	The chemical reactions and pathways involving glycosphingolipids, any compound with residues of sphingoid and at least one monosaccharide.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0043687	post-translational protein modification	The process of covalently altering one or more amino acids in a protein after the protein has been completely translated and released from the ribosome.
cellular component
	GO:0005788	endoplasmic reticulum lumen	The volume enclosed by the membranes of the endoplasmic reticulum.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0043202	lysosomal lumen	The volume enclosed within the lysosomal membrane.
	GO:0005764	lysosome	A small lytic vacuole that has cell cycle-independent morphology and is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions.

Chain X (SUMF1_HUMAN | Q8NBK3)

molecular function
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0042803	protein homodimerization activity	Interacting selectively and non-covalently with an identical protein to form a homodimer.
biological process
	GO:0006687	glycosphingolipid metabolic process	The chemical reactions and pathways involving glycosphingolipids, any compound with residues of sphingoid and at least one monosaccharide.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0043687	post-translational protein modification	The process of covalently altering one or more amino acids in a protein after the protein has been completely translated and released from the ribosome.
cellular component
	GO:0005783	endoplasmic reticulum	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
	GO:0005788	endoplasmic reticulum lumen	The volume enclosed by the membranes of the endoplasmic reticulum.

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	2hi8
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	ARSA_HUMAN \| P15289
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	SUMF1_HUMAN \| Q8NBK3
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	272200
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 20)

Sites (20, 20)