2GVC - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF FLAVIN-CONTAINING MONOOXYGENASE (FMO)FROM S.POMBE AND SUBSTRATE (METHIMAZOLE) COMPLEX

Authors :   S. Eswaramoorthy, S. Swaminathan, S. K. Burley, New York Sgx Resear For Structural Genomics (Nysgxrc)

Date :   02 May 06 (Deposition) - 06 Jun 06 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.22

Chains :   Asym. Unit : A,B,D,E
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: D,E  (1x)

Keywords :   Fmo, Fad, Methimazole, Oxygenase, Psi, Structural Genomics, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Eswaramoorthy, J. B. Bonanno, S. K. Burley, S. Swaminathan
Mechanism Of Action Of A Flavin-Containing Monooxygenase.
Proc. Natl. Acad. Sci. Usa V. 103 9832 2006
PubMed-ID: 16777962 | Reference-DOI: 10.1073/PNAS.0602398103

Molecule 1 - MONOOXYGENASE
	Chains	:	A, B, D, E
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Organism Common	:	FISSION YEAST
	Organism Scientific	:	SCHIZOSACCHAROMYCES POMBE
	Organism Taxid	:	4896

		1	2	3	4
Asymmetric Unit	:	A	B	D	E
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			D	E

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 32)

No.	Name	Count	Type	Full Name
1	FAD	4	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
2	GOL	4	Ligand/Ion	GLYCEROL
3	MMZ	4	Ligand/Ion	1-METHYL-1,3-DIHYDRO-2H-IMIDAZOLE-2-THIONE
4	MSE	16	Mod. Amino Acid	SELENOMETHIONINE
5	PEO	4	Ligand/Ion	HYDROGEN PEROXIDE

Biological Unit 1 (5, 16)

No.	Name	Count	Type	Full Name
1	FAD	2	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
2	GOL	2	Ligand/Ion	GLYCEROL
3	MMZ	2	Ligand/Ion	1-METHYL-1,3-DIHYDRO-2H-IMIDAZOLE-2-THIONE
4	MSE	8	Mod. Amino Acid	SELENOMETHIONINE
5	PEO	2	Ligand/Ion	HYDROGEN PEROXIDE

Biological Unit 2 (5, 16)

No.	Name	Count	Type	Full Name
1	FAD	2	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
2	GOL	2	Ligand/Ion	GLYCEROL
3	MMZ	2	Ligand/Ion	1-METHYL-1,3-DIHYDRO-2H-IMIDAZOLE-2-THIONE
4	MSE	8	Mod. Amino Acid	SELENOMETHIONINE
5	PEO	2	Ligand/Ion	HYDROGEN PEROXIDE

Asymmetric Unit (16, 16)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASN A:91 , VAL A:340 , FAD A:500 , MMZ A:501 , HOH A:518	BINDING SITE FOR RESIDUE PEO A 503
02	AC2	SOFTWARE	ASN B:91 , VAL B:340 , FAD B:500 , MMZ B:501	BINDING SITE FOR RESIDUE PEO B 503
03	AC3	SOFTWARE	ASN D:91 , VAL D:340 , FAD D:500 , MMZ D:501	BINDING SITE FOR RESIDUE PEO D 503
04	AC4	SOFTWARE	ASN E:91 , VAL E:340 , FAD E:500 , MMZ E:501	BINDING SITE FOR RESIDUE PEO E 503
05	AC5	SOFTWARE	GLY A:13 , GLY A:15 , PRO A:16 , SER A:17 , GLU A:38 , ARG A:39 , ARG A:40 , GLY A:45 , VAL A:46 , TRP A:47 , PRO A:83 , LEU A:84 , LEU A:88 , THR A:90 , ASN A:91 , THR A:92 , THR A:136 , ASP A:137 , VAL A:138 , CYS A:172 , ASN A:173 , GLY A:174 , TYR A:176 , PRO A:342 , PHE A:343 , MMZ A:501 , PEO A:503 , HOH A:504 , HOH A:512 , HOH A:513 , HOH A:524 , HOH A:528 , HOH A:534 , HOH A:545 , HOH A:564 , HOH A:570 , HOH A:623 , HOH A:640	BINDING SITE FOR RESIDUE FAD A 500
06	AC6	SOFTWARE	GLY B:13 , GLY B:15 , PRO B:16 , SER B:17 , PHE B:37 , GLU B:38 , ARG B:39 , ARG B:40 , GLY B:45 , VAL B:46 , TRP B:47 , PRO B:83 , LEU B:84 , THR B:90 , ASN B:91 , THR B:92 , THR B:136 , ASP B:137 , VAL B:138 , CYS B:172 , ASN B:173 , GLY B:174 , TYR B:176 , PHE B:296 , PRO B:342 , PHE B:343 , MMZ B:501 , PEO B:503 , HOH B:505 , HOH B:506 , HOH B:513 , HOH B:522 , HOH B:523 , HOH B:524 , HOH B:530 , HOH B:566 , HOH B:570 , HOH B:581 , HOH B:583 , HOH B:592	BINDING SITE FOR RESIDUE FAD B 500
07	AC7	SOFTWARE	GLY D:13 , GLY D:15 , PRO D:16 , SER D:17 , GLU D:38 , ARG D:39 , ARG D:40 , GLY D:45 , VAL D:46 , TRP D:47 , PRO D:83 , LEU D:84 , LEU D:88 , THR D:90 , ASN D:91 , THR D:92 , THR D:136 , ASP D:137 , VAL D:138 , CYS D:172 , ASN D:173 , GLY D:174 , TYR D:176 , PHE D:296 , PRO D:342 , PHE D:343 , MMZ D:501 , PEO D:503 , HOH D:504 , HOH D:508 , HOH D:509 , HOH D:516 , HOH D:521 , HOH D:538 , HOH D:539 , HOH D:550 , HOH D:554 , HOH D:588 , HOH D:591 , HOH D:598	BINDING SITE FOR RESIDUE FAD D 500
08	AC8	SOFTWARE	GLY E:13 , GLY E:15 , PRO E:16 , SER E:17 , PHE E:37 , GLU E:38 , ARG E:39 , ARG E:40 , GLY E:45 , VAL E:46 , TRP E:47 , PRO E:83 , LEU E:84 , THR E:90 , ASN E:91 , THR E:92 , THR E:136 , ASP E:137 , VAL E:138 , CYS E:172 , ASN E:173 , GLY E:174 , TYR E:176 , PHE E:296 , PRO E:342 , PHE E:343 , MMZ E:501 , PEO E:503 , HOH E:504 , HOH E:515 , HOH E:519 , HOH E:521 , HOH E:573 , HOH E:574 , HOH E:579 , HOH E:580 , HOH E:591 , HOH E:624 , HOH E:636	BINDING SITE FOR RESIDUE FAD E 500
09	AC9	SOFTWARE	TYR A:176 , FAD A:500 , PEO A:503	BINDING SITE FOR RESIDUE MMZ A 501
10	BC1	SOFTWARE	TYR B:176 , FAD B:500 , PEO B:503 , HOH B:545	BINDING SITE FOR RESIDUE MMZ B 501
11	BC2	SOFTWARE	TYR D:176 , FAD D:500 , PEO D:503	BINDING SITE FOR RESIDUE MMZ D 501
12	BC3	SOFTWARE	TYR E:176 , FAD E:500 , PEO E:503 , HOH E:564	BINDING SITE FOR RESIDUE MMZ E 501
13	BC4	SOFTWARE	TYR A:49 , SER A:51 , ARG A:86 , GLU A:206 , HOH A:508 , HOH A:509 , HOH A:551 , ASN B:48 , HOH B:616	BINDING SITE FOR RESIDUE GOL A 502
14	BC5	SOFTWARE	ASN A:48 , TYR B:49 , SER B:51 , ARG B:86 , GLU B:206 , HOH B:507 , HOH B:529	BINDING SITE FOR RESIDUE GOL B 502
15	BC6	SOFTWARE	TYR D:49 , SER D:51 , ARG D:86 , GLU D:206 , HOH D:506 , HOH D:517 , HOH D:608 , ASN E:48 , HOH E:528	BINDING SITE FOR RESIDUE GOL D 502
16	BC7	SOFTWARE	ASN D:48 , HOH D:621 , TYR E:49 , SER E:51 , ARG E:86 , GLU E:206 , HOH E:505 , HOH E:514 , HOH E:541 , HOH E:619	BINDING SITE FOR RESIDUE GOL E 502

(no "SS Bond" information available for 2GVC)

Asymmetric Unit

No.	Residues
1	Val A:59	-	Pro A:60
2	His A:237	-	Pro A:238
3	Tyr A:392	-	Pro A:393
4	Thr A:410	-	Pro A:411
5	Val B:59	-	Pro B:60
6	His B:237	-	Pro B:238
7	Tyr B:392	-	Pro B:393
8	Thr B:410	-	Pro B:411
9	Val D:59	-	Pro D:60
10	His D:237	-	Pro D:238
11	Tyr D:392	-	Pro D:393
12	Thr D:410	-	Pro D:411
13	Val E:59	-	Pro E:60
14	His E:237	-	Pro E:238
15	Tyr E:392	-	Pro E:393
16	Thr E:410	-	Pro E:411

(no "SAP(SNP)/Variant" information available for 2GVC)

(no "PROSITE Motif" information available for 2GVC)

(no "Exon" information available for 2GVC)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:442
 aligned with FMO1_SCHPO | Q9HFE4 from UniProtKB/Swiss-Prot  Length:447

    Alignment length:442
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442  
           FMO1_SCHPO     3 LPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDIQNESLQQVPEITKFDPTTREIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVPFPTSQAQAAFLARVWSGRLKLPSKEEQLKWQDELMFSLSGANNMYHSLDYPKDATYINKLHDWCKQATPVLEEEFPSPYWGEKERSIRENMWSIRAKFFGIE 444
               SCOP domains d2gvca1 A:3-180,A:288-444 Flavin-dependent monoxygenase SPBP16F5.08c                                                                                                              d2gvca2 A:181-287 Flavin-dependent monoxygenase SPBP16F5.08c                                               d2gvca1 A:3-180,A:288-444 Flavin-dependent monoxygenase SPBP16F5.08c                                                                                          SCOP domains
               CATH domains 2gvcA01 A:3-182,A:288-444  [code=3.50.50.60, no name defined]                                                                                                                       2gvcA02 A:183-287  [code=3.50.50.60, no name defined]                                                    2gvcA01 A:3-182,A:288-444  [code=3.50.50.60, no name defined]                                                                                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee..hhhhhhhhhhhhh.....eeeee......hhhhh......................eee..eeee.................................hhhhhhhhhhhhhhhhhh.ee..eeeeeeeee..eeeeeeee......eeeeee.eeee......ee......hhhhhhhhh...eee.hhh.hhhhhh...eeee..hhhhhhhhhhhh......eeee...........eeee..eeeee....eeee....eee...eeee...ee....hhhhhh.................eehhhee.....eee.......hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh.hhhhh.....hhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gvc A   3 LPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLYRDLQTNTPIELmGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDIQNESLQQVPEITKFDPTTREIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVPFPTSQAQAAFLARVWSGRLKLPSKEEQLKWQDELmFSLSGANNmYHSLDYPKDATYINKLHDWCKQATPVLEEEFPSPYWGEKERSIRENmWSIRAKFFGIE 444
                                    12        22        32        42        52        62        72        82        92    |  102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372    |  382   |   392       402       412       422       432|      442  
                                                                                                                         97-MSE                                                                                                                                                                                                                                                                                 377-MSE  386-MSE                                        433-MSE

Chain B from PDB  Type:PROTEIN  Length:442
 aligned with FMO1_SCHPO | Q9HFE4 from UniProtKB/Swiss-Prot  Length:447

    Alignment length:442
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442  
           FMO1_SCHPO     3 LPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDIQNESLQQVPEITKFDPTTREIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVPFPTSQAQAAFLARVWSGRLKLPSKEEQLKWQDELMFSLSGANNMYHSLDYPKDATYINKLHDWCKQATPVLEEEFPSPYWGEKERSIRENMWSIRAKFFGIE 444
               SCOP domains d2gvcb1 B:3-180,B:288-444 Flavin-dependent monoxygenase SPBP16F5.08c                                                                                                              d2gvcb2 B:181-287 Flavin-dependent monoxygenase SPBP16F5.08c                                               d2gvcb1 B:3-180,B:288-444 Flavin-dependent monoxygenase SPBP16F5.08c                                                                                          SCOP domains
               CATH domains 2gvcB01 B:3-182,B:288-444  [code=3.50.50.60, no name defined]                                                                                                                       2gvcB02 B:183-287  [code=3.50.50.60, no name defined]                                                    2gvcB01 B:3-182,B:288-444  [code=3.50.50.60, no name defined]                                                                                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee..hhhhhhhhhhhhhh....eeeee......hhhhh......................eee..eeee.................................hhhhhhhhhhhhhhhhhh.ee..eeeeeeeee..eeeeeeee......eeeeee.eeee......ee......hhhhhhhhh...eee.hhh.hhhhhh...eeee..hhhhhhhhhhhh......eeee...........eeee..eeee......eee....ee....eeee...ee....hhhhhh.................eehhhee.....eee.......hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh..hhhhh.....hhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gvc B   3 LPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLYRDLQTNTPIELmGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDIQNESLQQVPEITKFDPTTREIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVPFPTSQAQAAFLARVWSGRLKLPSKEEQLKWQDELmFSLSGANNmYHSLDYPKDATYINKLHDWCKQATPVLEEEFPSPYWGEKERSIRENmWSIRAKFFGIE 444
                                    12        22        32        42        52        62        72        82        92    |  102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372    |  382   |   392       402       412       422       432|      442  
                                                                                                                         97-MSE                                                                                                                                                                                                                                                                                 377-MSE  386-MSE                                        433-MSE

Chain D from PDB  Type:PROTEIN  Length:442
 aligned with FMO1_SCHPO | Q9HFE4 from UniProtKB/Swiss-Prot  Length:447

    Alignment length:442
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442  
           FMO1_SCHPO     3 LPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDIQNESLQQVPEITKFDPTTREIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVPFPTSQAQAAFLARVWSGRLKLPSKEEQLKWQDELMFSLSGANNMYHSLDYPKDATYINKLHDWCKQATPVLEEEFPSPYWGEKERSIRENMWSIRAKFFGIE 444
               SCOP domains d2gvcd1 D:3-180,D:288-444 Flavin-dependent monoxygenase SPBP16F5.08c                                                                                                              d2gvcd2 D:181-287 Flavin-dependent monoxygenase SPBP16F5.08c                                               d2gvcd1 D:3-180,D:288-444 Flavin-dependent monoxygenase SPBP16F5.08c                                                                                          SCOP domains
               CATH domains 2gvcD01 D:3-182,D:288-444  [code=3.50.50.60, no name defined]                                                                                                                       2gvcD02 D:183-287  [code=3.50.50.60, no name defined]                                                    2gvcD01 D:3-182,D:288-444  [code=3.50.50.60, no name defined]                                                                                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee..hhhhhhhhhhhhhh....eeeee......hhhhh......................eee..eeee.................................hhhhhhhhhhhhhhhhhh.ee..eeeeeeeee..eeeeeeee......eeeeee.eeee......ee......hhhhhhhhh...eee.hhh.hhhhhh...eeee..hhhhhhhhhhhh......eeee...........eeee..eeeee....eeee....eee...eeee...ee....hhhhhh.................eehhhee.....eee.......hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh.hhhhh.....hhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gvc D   3 LPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLYRDLQTNTPIELmGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDIQNESLQQVPEITKFDPTTREIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVPFPTSQAQAAFLARVWSGRLKLPSKEEQLKWQDELmFSLSGANNmYHSLDYPKDATYINKLHDWCKQATPVLEEEFPSPYWGEKERSIRENmWSIRAKFFGIE 444
                                    12        22        32        42        52        62        72        82        92    |  102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372    |  382   |   392       402       412       422       432|      442  
                                                                                                                         97-MSE                                                                                                                                                                                                                                                                                 377-MSE  386-MSE                                        433-MSE

Chain E from PDB  Type:PROTEIN  Length:442
 aligned with FMO1_SCHPO | Q9HFE4 from UniProtKB/Swiss-Prot  Length:447

    Alignment length:442
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442  
           FMO1_SCHPO     3 LPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDIQNESLQQVPEITKFDPTTREIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVPFPTSQAQAAFLARVWSGRLKLPSKEEQLKWQDELMFSLSGANNMYHSLDYPKDATYINKLHDWCKQATPVLEEEFPSPYWGEKERSIRENMWSIRAKFFGIE 444
               SCOP domains d2gvce1 E:3-180,E:288-444 Flavin-dependent monoxygenase SPBP16F5.08c                                                                                                              d2gvce2 E:181-287 Flavin-dependent monoxygenase SPBP16F5.08c                                               d2gvce1 E:3-180,E:288-444 Flavin-dependent monoxygenase SPBP16F5.08c                                                                                          SCOP domains
               CATH domains 2gvcE01 E:3-182,E:288-444  [code=3.50.50.60, no name defined]                                                                                                                       2gvcE02 E:183-287  [code=3.50.50.60, no name defined]                                                    2gvcE01 E:3-182,E:288-444  [code=3.50.50.60, no name defined]                                                                                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee..hhhhhhhhhhhhhh....eeeee......hhhhh......................eee..eeee.................................hhhhhhhhhhhhhhhhhh.ee..eeeeeeeee..eeeeeeee......eeeeee.eeee......ee......hhhhhhhhh...eee.hhh.hhhhhh...eeee..hhhhhhhhhhhh......eeee...........eeee..eeeee....eeee....ee....eeee...ee....hhhhhh.................eehhhee.....eee.......hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh.hhhhh.....hhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gvc E   3 LPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLYRDLQTNTPIELmGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDIQNESLQQVPEITKFDPTTREIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVPFPTSQAQAAFLARVWSGRLKLPSKEEQLKWQDELmFSLSGANNmYHSLDYPKDATYINKLHDWCKQATPVLEEEFPSPYWGEKERSIRENmWSIRAKFFGIE 444
                                    12        22        32        42        52        62        72        82        92    |  102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372    |  382   |   392       402       412       422       432|      442  
                                                                                                                         97-MSE                                                                                                                                                                                                                                                                                 377-MSE  386-MSE                                        433-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: FAD/NAD(P)-binding domain (331)

Superfamily: FAD/NAD(P)-binding domain (331)

Family: FAD/NAD-linked reductases, N-terminal and central domains (92)

Protein domain: Flavin-dependent monoxygenase SPBP16F5.08c (3)

Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896] (3)

1a	d2gvca1	A:3-180,A:288-444
1b	d2gvce1	E:3-180,E:288-444
1c	d2gvce2	E:181-287
1d	d2gvca2	A:181-287
1e	d2gvcb1	B:3-180,B:288-444
1f	d2gvcb2	B:181-287
1g	d2gvcd1	D:3-180,D:288-444
1h	d2gvcd2	D:181-287

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(bba) Sandwich (528)

Topology: FAD/NAD(P)-binding domain (373)

Homologous Superfamily: [code=3.50.50.60, no name defined] (373)

Fission yeast (Schizosaccharomyces pombe) (3)

1a	2gvcA02	A:183-287
1b	2gvcA01	A:3-182,A:288-444
1c	2gvcB01	B:3-182,B:288-444
1d	2gvcD01	D:3-182,D:288-444
1e	2gvcE01	E:3-182,E:288-444
1f	2gvcB02	B:183-287
1g	2gvcD02	D:183-287
1h	2gvcE02	E:183-287

(no "Pfam Domain" information available for 2GVC)

Asymmetric Unit(hide GO term definitions)

Chain A,B,D,E (FMO1_SCHPO | Q9HFE4)

molecular function
	GO:0004499	N,N-dimethylaniline monooxygenase activity	Catalysis of the reaction: N,N-dimethylaniline + NADPH + H+ + O2 = N,N-dimethylaniline N-oxide + NADP+ + H2O.
	GO:0050661	NADP binding	Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH.
	GO:0050660	flavin adenine dinucleotide binding	Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
	GO:0004497	monooxygenase activity	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0006457	protein folding	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
cellular component
	GO:0005789	endoplasmic reticulum membrane	The lipid bilayer surrounding the endoplasmic reticulum.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

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	Cis Peptide Bonds
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		Val A:59 - Pro A:60	[ RasMol ]
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		Val E:59 - Pro E:60	[ RasMol ]

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	2gvc
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	FMO1_SCHPO \| Q9HFE4
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	FMO1_SCHPO \| Q9HFE4
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UniProtKB/Swiss-Prot
	FMO1_SCHPO \| Q9HFE4	:	1vqw 2gv8

1vqw	WILD TYPE STRUCTURE OF FMO
2gv8	PROTEIN (FMO) - COFACTOR (NADPH) COMPLEX RELATED ID: NYSGXRC-T1729 RELATED DB: TARGETDB

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 32)

Sites (16, 16)

SS Bonds (0, 0)

Cis Peptide Bonds (16, 16)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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SCOP Domains (1, 8)

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