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2GVC
Biol. Unit 1
Info
Asym.Unit (305 KB)
Biol.Unit 1 (151 KB)
Biol.Unit 2 (153 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF FLAVIN-CONTAINING MONOOXYGENASE (FMO)FROM S.POMBE AND SUBSTRATE (METHIMAZOLE) COMPLEX
Authors
:
S. Eswaramoorthy, S. Swaminathan, S. K. Burley, New York Sgx Resear For Structural Genomics (Nysgxrc)
Date
:
02 May 06 (Deposition) - 06 Jun 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.22
Chains
:
Asym. Unit : A,B,D,E
Biol. Unit 1: A,B (1x)
Biol. Unit 2: D,E (1x)
Keywords
:
Fmo, Fad, Methimazole, Oxygenase, Psi, Structural Genomics, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Eswaramoorthy, J. B. Bonanno, S. K. Burley, S. Swaminathan
Mechanism Of Action Of A Flavin-Containing Monooxygenase.
Proc. Natl. Acad. Sci. Usa V. 103 9832 2006
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Hetero Components
(5, 16)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
1c: FLAVIN-ADENINE DINUCLEOTIDE (FADc)
1d: FLAVIN-ADENINE DINUCLEOTIDE (FADd)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
3a: 1-METHYL-1,3-DIHYDRO-2H-IMIDAZOLE-... (MMZa)
3b: 1-METHYL-1,3-DIHYDRO-2H-IMIDAZOLE-... (MMZb)
3c: 1-METHYL-1,3-DIHYDRO-2H-IMIDAZOLE-... (MMZc)
3d: 1-METHYL-1,3-DIHYDRO-2H-IMIDAZOLE-... (MMZd)
4a: SELENOMETHIONINE (MSEa)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
4i: SELENOMETHIONINE (MSEi)
4j: SELENOMETHIONINE (MSEj)
4k: SELENOMETHIONINE (MSEk)
4l: SELENOMETHIONINE (MSEl)
4m: SELENOMETHIONINE (MSEm)
4n: SELENOMETHIONINE (MSEn)
4o: SELENOMETHIONINE (MSEo)
4p: SELENOMETHIONINE (MSEp)
5a: HYDROGEN PEROXIDE (PEOa)
5b: HYDROGEN PEROXIDE (PEOb)
5c: HYDROGEN PEROXIDE (PEOc)
5d: HYDROGEN PEROXIDE (PEOd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
GOL
2
Ligand/Ion
GLYCEROL
3
MMZ
2
Ligand/Ion
1-METHYL-1,3-DIHYDRO-2H-IMIDAZOLE-2-THIONE
4
MSE
8
Mod. Amino Acid
SELENOMETHIONINE
5
PEO
2
Ligand/Ion
HYDROGEN PEROXIDE
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC5 (SOFTWARE)
4: AC6 (SOFTWARE)
5: AC9 (SOFTWARE)
6: BC1 (SOFTWARE)
7: BC4 (SOFTWARE)
8: BC5 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:91 , VAL A:340 , FAD A:500 , MMZ A:501 , HOH A:518
BINDING SITE FOR RESIDUE PEO A 503
2
AC2
SOFTWARE
ASN B:91 , VAL B:340 , FAD B:500 , MMZ B:501
BINDING SITE FOR RESIDUE PEO B 503
3
AC5
SOFTWARE
GLY A:13 , GLY A:15 , PRO A:16 , SER A:17 , GLU A:38 , ARG A:39 , ARG A:40 , GLY A:45 , VAL A:46 , TRP A:47 , PRO A:83 , LEU A:84 , LEU A:88 , THR A:90 , ASN A:91 , THR A:92 , THR A:136 , ASP A:137 , VAL A:138 , CYS A:172 , ASN A:173 , GLY A:174 , TYR A:176 , PRO A:342 , PHE A:343 , MMZ A:501 , PEO A:503 , HOH A:504 , HOH A:512 , HOH A:513 , HOH A:524 , HOH A:528 , HOH A:534 , HOH A:545 , HOH A:564 , HOH A:570 , HOH A:623 , HOH A:640
BINDING SITE FOR RESIDUE FAD A 500
4
AC6
SOFTWARE
GLY B:13 , GLY B:15 , PRO B:16 , SER B:17 , PHE B:37 , GLU B:38 , ARG B:39 , ARG B:40 , GLY B:45 , VAL B:46 , TRP B:47 , PRO B:83 , LEU B:84 , THR B:90 , ASN B:91 , THR B:92 , THR B:136 , ASP B:137 , VAL B:138 , CYS B:172 , ASN B:173 , GLY B:174 , TYR B:176 , PHE B:296 , PRO B:342 , PHE B:343 , MMZ B:501 , PEO B:503 , HOH B:505 , HOH B:506 , HOH B:513 , HOH B:522 , HOH B:523 , HOH B:524 , HOH B:530 , HOH B:566 , HOH B:570 , HOH B:581 , HOH B:583 , HOH B:592
BINDING SITE FOR RESIDUE FAD B 500
5
AC9
SOFTWARE
TYR A:176 , FAD A:500 , PEO A:503
BINDING SITE FOR RESIDUE MMZ A 501
6
BC1
SOFTWARE
TYR B:176 , FAD B:500 , PEO B:503 , HOH B:545
BINDING SITE FOR RESIDUE MMZ B 501
7
BC4
SOFTWARE
TYR A:49 , SER A:51 , ARG A:86 , GLU A:206 , HOH A:508 , HOH A:509 , HOH A:551 , ASN B:48 , HOH B:616
BINDING SITE FOR RESIDUE GOL A 502
8
BC5
SOFTWARE
ASN A:48 , TYR B:49 , SER B:51 , ARG B:86 , GLU B:206 , HOH B:507 , HOH B:529
BINDING SITE FOR RESIDUE GOL B 502
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d2gvca1 (A:3-180,A:288-444)
1b: SCOP_d2gvce1 (E:3-180,E:288-444)
1c: SCOP_d2gvce2 (E:181-287)
1d: SCOP_d2gvca2 (A:181-287)
1e: SCOP_d2gvcb1 (B:3-180,B:288-444)
1f: SCOP_d2gvcb2 (B:181-287)
1g: SCOP_d2gvcd1 (D:3-180,D:288-444)
1h: SCOP_d2gvcd2 (D:181-287)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
FAD/NAD(P)-binding domain
(331)
Superfamily
:
FAD/NAD(P)-binding domain
(331)
Family
:
FAD/NAD-linked reductases, N-terminal and central domains
(92)
Protein domain
:
Flavin-dependent monoxygenase SPBP16F5.08c
(3)
Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
(3)
1a
d2gvca1
A:3-180,A:288-444
1b
d2gvce1
E:3-180,E:288-444
1c
d2gvce2
E:181-287
1d
d2gvca2
A:181-287
1e
d2gvcb1
B:3-180,B:288-444
1f
d2gvcb2
B:181-287
1g
d2gvcd1
D:3-180,D:288-444
1h
d2gvcd2
D:181-287
[
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_2gvcA02 (A:183-287)
1b: CATH_2gvcA01 (A:3-182,A:288-444)
1c: CATH_2gvcB01 (B:3-182,B:288-444)
1d: CATH_2gvcD01 (D:3-182,D:288-444)
1e: CATH_2gvcE01 (E:3-182,E:288-444)
1f: CATH_2gvcB02 (B:183-287)
1g: CATH_2gvcD02 (D:183-287)
1h: CATH_2gvcE02 (E:183-287)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
FAD/NAD(P)-binding domain
(373)
Homologous Superfamily
:
[code=3.50.50.60, no name defined]
(373)
Fission yeast (Schizosaccharomyces pombe)
(3)
1a
2gvcA02
A:183-287
1b
2gvcA01
A:3-182,A:288-444
1c
2gvcB01
B:3-182,B:288-444
1d
2gvcD01
D:3-182,D:288-444
1e
2gvcE01
E:3-182,E:288-444
1f
2gvcB02
B:183-287
1g
2gvcD02
D:183-287
1h
2gvcE02
E:183-287
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Pfam Domains
(0, 0)
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