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(-) Description

Title :  CRYSTAL STRUCTURE OF TONB IN COMPLEX WITH FHUA, E. COLI OUTER MEMBRANE RECEPTOR FOR FERRICHROME
 
Authors :  P. D. Pawelek, M. Allaire, J. W. Coulton
Date :  25 Apr 06  (Deposition) - 13 Jun 06  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.30
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Keywords :  Beta Barrel, Outer Membrane, Heterocomplex, Inter-Protein Beta Sheet, Protein-Protein, Metal Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  P. D. Pawelek, N. Croteau, C. Ng-Thow-Hing, C. M. Khursigara, N. Moiseeva, M. Allaire, J. W. Coulton
Structure Of Tonb In Complex With Fhua, E. Coli Outer Membrane Receptor.
Science V. 312 1399 2006
PubMed-ID: 16741125  |  Reference-DOI: 10.1126/SCIENCE.1128057
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - FERRICHROME-IRON RECEPTOR
    ChainsA, B
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainAW740
    Expression System Taxid562
    GeneFHUA
    Organism ScientificESCHERICHIA COLI
    Organism Taxid562
    SynonymFERRIC HYDROXAMATE UPTAKE, FERRIC HYDROXAMATE RECEPTOR
 
Molecule 2 - PROTEIN TONB
    ChainsC, D
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainER2566
    Expression System Taxid562
    GeneTONB
    Organism ScientificESCHERICHIA COLI
    Organism Taxid562

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)A C 
Biological Unit 2 (1x) B D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (10, 29)

Asymmetric Unit (10, 29)
No.NameCountTypeFull Name
1DAO2Ligand/IonLAURIC ACID
2DPO2Ligand/IonDIPHOSPHATE
3EAP2Ligand/Ion2-AMINO-VINYL-PHOSPHATE
4FCI2Ligand/IonFERRICROCIN-IRON
5FTT8Ligand/Ion3-HYDROXY-TETRADECANOIC ACID
6GCN4Ligand/Ion3-DEOXY-D-GLUCOSAMINE
7GMH2Ligand/IonL-GLYCERO-D-MANNO-HEPTOPYRANOSE
8KDO4Ligand/Ion3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID
9MYR1Ligand/IonMYRISTIC ACID
10PO42Ligand/IonPHOSPHATE ION
Biological Unit 1 (9, 14)
No.NameCountTypeFull Name
1DAO1Ligand/IonLAURIC ACID
2DPO1Ligand/IonDIPHOSPHATE
3EAP1Ligand/Ion2-AMINO-VINYL-PHOSPHATE
4FCI1Ligand/IonFERRICROCIN-IRON
5FTT4Ligand/Ion3-HYDROXY-TETRADECANOIC ACID
6GCN2Ligand/Ion3-DEOXY-D-GLUCOSAMINE
7GMH1Ligand/IonL-GLYCERO-D-MANNO-HEPTOPYRANOSE
8KDO2Ligand/Ion3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID
9MYR-1Ligand/IonMYRISTIC ACID
10PO41Ligand/IonPHOSPHATE ION
Biological Unit 2 (10, 15)
No.NameCountTypeFull Name
1DAO1Ligand/IonLAURIC ACID
2DPO1Ligand/IonDIPHOSPHATE
3EAP1Ligand/Ion2-AMINO-VINYL-PHOSPHATE
4FCI1Ligand/IonFERRICROCIN-IRON
5FTT4Ligand/Ion3-HYDROXY-TETRADECANOIC ACID
6GCN2Ligand/Ion3-DEOXY-D-GLUCOSAMINE
7GMH1Ligand/IonL-GLYCERO-D-MANNO-HEPTOPYRANOSE
8KDO2Ligand/Ion3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID
9MYR1Ligand/IonMYRISTIC ACID
10PO41Ligand/IonPHOSPHATE ION

(-) Sites  (29, 29)

Asymmetric Unit (29, 29)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREFTT A:900 , FTT A:901 , FTT A:902 , DPO A:910 , GCN A:921 , KDO A:971BINDING SITE FOR RESIDUE GCN A 920
02AC2SOFTWAREFTT A:902 , FTT A:903 , GCN A:920 , PO4 A:950 , KDO A:970BINDING SITE FOR RESIDUE GCN A 921
03AC3SOFTWAREGLN A:353 , ARG A:384 , ASP A:386 , GCN A:921 , PO4 A:950 , GMH A:960 , KDO A:971BINDING SITE FOR RESIDUE KDO A 970
04AC4SOFTWAREARG A:384 , GCN A:920 , GMH A:960 , KDO A:970 , EAP A:980 , LYS B:481BINDING SITE FOR RESIDUE KDO A 971
05AC5SOFTWAREARG A:474 , KDO A:970 , KDO A:971 , EAP A:980BINDING SITE FOR RESIDUE GMH A 960
06AC6SOFTWAREFTT B:900 , FTT B:901 , FTT B:902 , DPO B:910 , GCN B:921BINDING SITE FOR RESIDUE GCN B 920
07AC7SOFTWAREFTT B:902 , FTT B:903 , GCN B:920 , PO4 B:950 , KDO B:970BINDING SITE FOR RESIDUE GCN B 921
08AC8SOFTWAREGLN B:353 , ARG B:384 , ASP B:386 , GCN B:921 , PO4 B:950 , GMH B:960 , KDO B:971BINDING SITE FOR RESIDUE KDO B 970
09AC9SOFTWARELYS A:481 , ASP A:483 , DPO B:910 , GMH B:960 , KDO B:970 , EAP B:980BINDING SITE FOR RESIDUE KDO B 971
10BC1SOFTWAREARG B:474 , KDO B:970 , KDO B:971 , EAP B:980BINDING SITE FOR RESIDUE GMH B 960
11BC2SOFTWAREGLU A:304 , LYS A:351 , FTT A:903 , GCN A:921 , KDO A:970BINDING SITE FOR RESIDUE PO4 A 950
12BC3SOFTWAREGLU B:304 , LYS B:351 , FTT B:903 , GCN B:921 , KDO B:970BINDING SITE FOR RESIDUE PO4 B 950
13BC4SOFTWAREPHE A:380 , ARG A:382 , FTT A:901 , FTT A:902 , DPO A:910 , GCN A:920 , DAO A:930 , FTT B:900 , FTT B:901 , DPO B:910BINDING SITE FOR RESIDUE FTT A 900
14BC5SOFTWAREFTT A:900 , GCN A:920 , DAO A:930 , LYS B:441 , FTT B:900BINDING SITE FOR RESIDUE FTT A 901
15BC6SOFTWARETYR A:284 , LEU A:300 , PHE A:302 , GLN A:353 , ARG A:382 , FTT A:900 , GCN A:920 , GCN A:921 , DAO A:930BINDING SITE FOR RESIDUE FTT A 902
16BC7SOFTWAREGLU A:304 , GCN A:921 , PO4 A:950BINDING SITE FOR RESIDUE FTT A 903
17BC8SOFTWAREFTT A:900 , FTT A:901 , TYR B:284 , GLN B:298 , PHE B:380 , ARG B:382 , FTT B:901 , FTT B:902 , DPO B:910 , GCN B:920 , DAO B:930BINDING SITE FOR RESIDUE FTT B 900
18BC9SOFTWAREPHE A:380 , LYS A:441 , THR A:443 , FTT A:900 , FTT B:900 , FTT B:902 , FTT B:903 , GCN B:920 , DAO B:930BINDING SITE FOR RESIDUE FTT B 901
19CC1SOFTWARETYR B:284 , LEU B:300 , PHE B:302 , GLN B:353 , ARG B:382 , FTT B:900 , FTT B:901 , FTT B:903 , GCN B:920 , GCN B:921 , DAO B:930BINDING SITE FOR RESIDUE FTT B 902
20CC2SOFTWAREPHE B:302 , FTT B:901 , FTT B:902 , GCN B:921 , MYR B:940 , PO4 B:950BINDING SITE FOR RESIDUE FTT B 903
21CC3SOFTWARELYS A:439 , FTT A:900 , GCN A:920 , DPO B:910BINDING SITE FOR RESIDUE DPO A 910
22CC4SOFTWAREFTT A:900 , DPO A:910 , LYS B:439 , FTT B:900 , GCN B:920 , KDO B:971BINDING SITE FOR RESIDUE DPO B 910
23CC5SOFTWARETYR A:284 , ARG A:382 , FTT A:900 , FTT A:901 , FTT A:902BINDING SITE FOR RESIDUE DAO A 930
24CC6SOFTWAREPHE B:355 , ARG B:382 , FTT B:900 , FTT B:901 , FTT B:902BINDING SITE FOR RESIDUE DAO B 930
25CC7SOFTWAREGLU B:304 , FTT B:903BINDING SITE FOR RESIDUE MYR B 940
26CC8SOFTWAREGMH A:960 , KDO A:971BINDING SITE FOR RESIDUE EAP A 980
27CC9SOFTWARELYS A:481 , GMH B:960 , KDO B:971BINDING SITE FOR RESIDUE EAP B 980
28DC1SOFTWAREARG A:81 , GLY A:99 , GLN A:100 , PHE A:115 , TYR A:116 , TYR A:244 , TRP A:246 , PHE A:391BINDING SITE FOR RESIDUE FCI A 1050
29DC2SOFTWAREARG B:81 , GLY B:99 , GLN B:100 , PHE B:115 , TYR B:116 , TYR B:244 , TRP B:246 , TYR B:313 , PHE B:391BINDING SITE FOR RESIDUE FCI B 1050

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:318 -A:329
2A:703 -A:709
3B:318 -B:329
4B:703 -B:709

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Lys C:197 -Pro C:198
2Lys D:197 -Pro D:198

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 2)

Asymmetric Unit (1, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_TONB_ECOLI_006 *V176ITONB_ECOLI  ---  ---C/DV176I
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (1, 1)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_TONB_ECOLI_006 *V176ITONB_ECOLI  ---  ---CV176I
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (1, 1)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_TONB_ECOLI_006 *V176ITONB_ECOLI  ---  ---DV176I
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 2)

Asymmetric Unit (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TONB_DEPENDENT_REC_2PS01156 TonB-dependent receptor proteins signature 2.FHUA_ECOLI730-747
 
  2A:708-725
B:708-725
Biological Unit 1 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TONB_DEPENDENT_REC_2PS01156 TonB-dependent receptor proteins signature 2.FHUA_ECOLI730-747
 
  1A:708-725
-
Biological Unit 2 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TONB_DEPENDENT_REC_2PS01156 TonB-dependent receptor proteins signature 2.FHUA_ECOLI730-747
 
  1-
B:708-725

(-) Exons   (0, 0)

(no "Exon" information available for 2GRX)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:702
 aligned with FHUA_ECOLI | P06971 from UniProtKB/Swiss-Prot  Length:747

    Alignment length:707
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       
           FHUA_ECOLI    41 TITVTAAPAPQESAWGPAATIAARQSATGTKTDTPIQKVPQSISVVTAEEMALHQPKSVKEALSYTPGVSVGTRGASNTYDHLIIRGFAAEGQSQNNYLNGLKLQGNFYNDAVIDPYMLERAEIMRGPVSVLYGKSSPGGLLNMVSKRPTTEPLKEVQFKAGTDSLFQTGFDFSDSLDDDGVYSYRLTGLARSANAQQKGSEEQRYAIAPAFTWRPDDKTNFTFLSYFQNEPETGYYGWLPKEGTVEPLPNGKRLPTDFNEGAKNNTYSRNEKMVGYSFDHEFNDTFTVRQNLRFAENKTSQNSVYGYGVCSDPANAYSKQCAALAPADKGHYLARKYVVDDEKLQNFSVDTQLQSKFATGDIDHTLLTGVDFMRMRNDINAWFGYDDSVPLLNLYNPVNTDFDFNAKDPANSGPYRILNKQKQTGVYVQDQAQWDKVLVTLGGRYDWADQESLNRVAGTTDKRDDKQFTWRGGVNYLFDNGVTPYFSYSESFEPSSQVGKDGNIFAPSKGKQYEVGVKYVPEDRPIVVTGAVYNLTKTNNLMADPEGSFFSVEGGEIRARGVEIEAKAALSASVNVVGSYTYTDAEYTTDTTYKGNTPAQVPKHMASLWADYTFFDGPLSGLTLGTGGRYTGSSYGDPANSFKVGSYTVVDALVRYDLARVGMAGSNVALHVNNLFDREYVASCFNTYGCFWGAERQVVATATFRF 747
               SCOP domains -----------d2grxa1 A:19-725 Ferric hydroxamate uptake receptor FhuA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains 2grxA01 A:8-160 Ferric Hydroxamate Uptake Protein; Chain A, domain 1                                                                                     2grxA02 A:161-725  [code=2.40.170.20, no name defined]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee..................ee.......ee.hhh....eeeehhhhh................ee.............ee...........eee..ee...........hhh.eeeeee....hhhhhh.......eeeee.......eeeeeeeee...eeeeeeeeeee.......eeeeeeeeeeee......eeeeeeeeeeeee.....eeeeeeeeeeeeeee................................eeeeeeeeeeeeeeee....eeeeeeeeeeeeeeeeee........hhhhh........hhhhhh.......eeeeeeeeeeeeeeeeeeee....eeeeeeeeeeeeeeeeeeeeeee..........-----............eeee.eeeeeeeeeeeeeeeeee..eeeeeeeeeee..eeeee.....eeee..eeeeeeeeeee......eeeeeeeeeee..............eeeeeeeeeeee......eeeeeeeeeeeeeeeeee.......eeeeeeeeeeeeeeeeee.....eeeeeeeeeeeeeeee..............eeeeeeeeee.........eeeeeeeee..ee.......ee..eeeeeeeeeee.hhhh....eeeeeee.......eeee.....eee....eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TONB_DEPENDENT_REC PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2grx A   8 TITVTAAPAPQESAWGPAATIAARQSATGTKTDTPIQKVPQSISVVTAEEMALHQPKSVKEALSYTPGVSVGTRGASNTYDHLIIRGFAAEGQSQNNYLNGLKLQGNFYNDAVIDPYMLERAEIMRGPVSVLYGKSSPGGLLNMVSKRPTTEPLKEVQFKAGTDSLFQTGFDFSDSLDDDGVYSYRLTGLARSANAQQKGSEEQRYAIAPAFTWRPDDKTNFTFLSYFQNEPETGYYGWLPKEGTVEPLPNGKRLPTDFNEGAKNNTYSRNEKMVGYSFDHEFNDTFTVRQNLRFAENKTSQNSVYGYGVCSDPANAYSKQCAALAPADKGHYLARKYVVDDEKLQNFSVDTQLQSKFATGDIDHTLLTGVDFMRMRNDINAWFGYDDSVPLLNL-----TDFDFNAKDPANSGPYRILNKQKQTGVYVQDQAQWDKVLVTLGGRYDWADQESLNRVAGTTDKRDDKQFTWRGGVNYLFDNGVTPYFSYSESFEPSSQVGKDGNIFAPSKGKQYEVGVKYVPEDRPIVVTGAVYNLTKTNNLMADPEGSFFSVEGGEIRARGVEIEAKAALSASVNVVGSYTYTDAEYTTDTTYKGNTPAQVPKHMASLWADYTFFDGPLSGLTLGTGGRYTGSSYGDPANSFKVGSYTVVDALVRYDLARVGMAGSNVALHVNNLFDREYVASCFNTYGCFWGAERQVVATATFRF 725
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397    |    -|      428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678       688       698       708       718       
                                                                                                                                                                                                                                                                                                                                                                                                                                    402   419                                                                                                                                                                                                                                                                                                                  

Chain B from PDB  Type:PROTEIN  Length:691
 aligned with FHUA_ECOLI | P06971 from UniProtKB/Swiss-Prot  Length:747

    Alignment length:696
                                    61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741      
           FHUA_ECOLI    52 ESAWGPAATIAARQSATGTKTDTPIQKVPQSISVVTAEEMALHQPKSVKEALSYTPGVSVGTRGASNTYDHLIIRGFAAEGQSQNNYLNGLKLQGNFYNDAVIDPYMLERAEIMRGPVSVLYGKSSPGGLLNMVSKRPTTEPLKEVQFKAGTDSLFQTGFDFSDSLDDDGVYSYRLTGLARSANAQQKGSEEQRYAIAPAFTWRPDDKTNFTFLSYFQNEPETGYYGWLPKEGTVEPLPNGKRLPTDFNEGAKNNTYSRNEKMVGYSFDHEFNDTFTVRQNLRFAENKTSQNSVYGYGVCSDPANAYSKQCAALAPADKGHYLARKYVVDDEKLQNFSVDTQLQSKFATGDIDHTLLTGVDFMRMRNDINAWFGYDDSVPLLNLYNPVNTDFDFNAKDPANSGPYRILNKQKQTGVYVQDQAQWDKVLVTLGGRYDWADQESLNRVAGTTDKRDDKQFTWRGGVNYLFDNGVTPYFSYSESFEPSSQVGKDGNIFAPSKGKQYEVGVKYVPEDRPIVVTGAVYNLTKTNNLMADPEGSFFSVEGGEIRARGVEIEAKAALSASVNVVGSYTYTDAEYTTDTTYKGNTPAQVPKHMASLWADYTFFDGPLSGLTLGTGGRYTGSSYGDPANSFKVGSYTVVDALVRYDLARVGMAGSNVALHVNNLFDREYVASCFNTYGCFWGAERQVVATATFRF 747
               SCOP domains d2grxb1 B:19-725 Ferric hydroxamate uptake receptor FhuA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains 2grxB01 B:19-160 Ferric Hydroxamate Uptake Protein; Chain A, domain 1                                                                         2grxB02 B:161-725  [code=2.40.170.20, no name defined]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .............ee.......ee.hhh....eeeehhhhh................ee.............ee...........eee..ee...........hhh.eeeeee....hhhhhh.......eeeee.......eeeeeeeee...eeeeeeeeeee.......eeeeeeeeeeee......eeeeeeeeeeeee.....eeeeeeeeeeeeeee................................eeeeeeeeeeeeeeee....eeeeeeeeeeeeeeeeee........hhhhh........hhhhhh.......eeeeeeeeeeeeeeeeeeee....eeeeeeeeeeeeeeeeeeeeeee..........-----............eeee.eeeeeeeeeeeeeeeeee..eeeeeeeeeee..eeeee.....eeee..eeeeeeeeeee......eeeeeeeeeee..............eeeeeeeeeeee......eeeeeeeeeeeeeeeeee.......eeeeeeeeeeeeeeeeee.....eeeeeeeeeeeeeeee..............eeeeeeeeee.........eeeeeeeee..ee.......ee..eeeeeeeeeee.hhhh....eeeeeee.......eeee.....eee....eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TONB_DEPENDENT_REC PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2grx B  19 ESAWGPAATIAARQSATGTKTDTPIQKVPQSISVVTAEEMALHQPKSVKEALSYTPGVSVGTRGASNTYDHLIIRGFAAEGQSQNNYLNGLKLQGNFYNDAVIDPYMLERAEIMRGPVSVLYGKSSPGGLLNMVSKRPTTEPLKEVQFKAGTDSLFQTGFDFSDSLDDDGVYSYRLTGLARSANAQQKGSEEQRYAIAPAFTWRPDDKTNFTFLSYFQNEPETGYYGWLPKEGTVEPLPNGKRLPTDFNEGAKNNTYSRNEKMVGYSFDHEFNDTFTVRQNLRFAENKTSQNSVYGYGVCSDPANAYSKQCAALAPADKGHYLARKYVVDDEKLQNFSVDTQLQSKFATGDIDHTLLTGVDFMRMRNDINAWFGYDDSVPLLNL-----TDFDFNAKDPANSGPYRILNKQKQTGVYVQDQAQWDKVLVTLGGRYDWADQESLNRVAGTTDKRDDKQFTWRGGVNYLFDNGVTPYFSYSESFEPSSQVGKDGNIFAPSKGKQYEVGVKYVPEDRPIVVTGAVYNLTKTNNLMADPEGSFFSVEGGEIRARGVEIEAKAALSASVNVVGSYTYTDAEYTTDTTYKGNTPAQVPKHMASLWADYTFFDGPLSGLTLGTGGRYTGSSYGDPANSFKVGSYTVVDALVRYDLARVGMAGSNVALHVNNLFDREYVASCFNTYGCFWGAERQVVATATFRF 725
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398   |   419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719      
                                                                                                                                                                                                                                                                                                                                                                                                                         402   419                                                                                                                                                                                                                                                                                                                  

Chain C from PDB  Type:PROTEIN  Length:78
 aligned with TONB_ECOLI | P02929 from UniProtKB/Swiss-Prot  Length:239

    Alignment length:78
                                   167       177       187       197       207       217       227        
           TONB_ECOLI   158 RNQPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMRRWRYEPGKPGSGIVVNILFKINGT 235
               SCOP domains d2grxc1 C:158-235 TonB                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhhhh..eee.eeee.......eeeee........hhhhhhhhh.............ee..eee..... Sec.struct. author
                 SAPs(SNPs) ------------------I----------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------ Transcript
                 2grx C 158 RNQPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMRRWRYEPGKPGSGIVVNILFKINGT 235
                                   167       177       187       197       207       217       227        

Chain D from PDB  Type:PROTEIN  Length:78
 aligned with TONB_ECOLI | P02929 from UniProtKB/Swiss-Prot  Length:239

    Alignment length:78
                                   167       177       187       197       207       217       227        
           TONB_ECOLI   158 RNQPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMRRWRYEPGKPGSGIVVNILFKINGT 235
               SCOP domains d2grxd1 D:158-235 TonB                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhhhh..eee.eeee.......eeeee........hhhhhhhhh.............ee..eee..... Sec.struct. author
                 SAPs(SNPs) ------------------I----------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------ Transcript
                 2grx D 158 RNQPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMRRWRYEPGKPGSGIVVNILFKINGT 235
                                   167       177       187       197       207       217       227        

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric Unit

(-) CATH Domains  (2, 4)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2GRX)

(-) Gene Ontology  (24, 29)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (FHUA_ECOLI | P06971)
molecular function
    GO:0048037    cofactor binding    Interacting selectively and non-covalently with a cofactor, a substance that is required for the activity of an enzyme or other protein. Cofactors may be inorganic, such as the metal atoms zinc, iron, and copper in certain forms, or organic, in which case they are referred to as coenzymes. Cofactors may either be bound tightly to active sites or bind loosely with the substrate.
    GO:0005506    iron ion binding    Interacting selectively and non-covalently with iron (Fe) ions.
    GO:0004872    receptor activity    Combining with an extracellular or intracellular messenger to initiate a change in cell activity.
    GO:0015344    siderophore uptake transmembrane transporter activity    Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: siderophore-iron(ferrioxamine)(out) + H+(out) = siderophore-iron(ferrioxamine)(in) + H+(in).
    GO:0015643    toxic substance binding    Interacting selectively and non-covalently with a toxic substance, a poisonous substance that causes damage to biological systems.
    GO:0046790    virion binding    Interacting selectively and non-covalently with a virion, either by binding to components of the capsid or the viral envelope.
biological process
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0055072    iron ion homeostasis    Any process involved in the maintenance of an internal steady state of iron ions within an organism or cell.
    GO:0044718    siderophore transmembrane transport    The directed movement of siderophores, low molecular weight Fe(III)-chelating substances, from one side of a membrane to the other, by means of some agent such as a transporter or pore.
    GO:0015891    siderophore transport    The directed movement of siderophores, low molecular weight Fe(III)-chelating substances, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0009279    cell outer membrane    A lipid bilayer that forms the outermost membrane of the cell envelope; enriched in polysaccharide and protein; the outer leaflet of the membrane contains specific lipopolysaccharide structures.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Chain C,D   (TONB_ECOLI | P02929)
molecular function
    GO:0031992    energy transducer activity    The biological transducer activity that accepts energy and converts it to another form, often by transfer to another molecule within the cell.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0015343    siderophore transmembrane transporter activity    Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: siderophore-iron(out) + H+(out) = siderophore-iron(in) + H+(in).
biological process
    GO:0043213    bacteriocin transport    The directed movement of a bacteriocin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Bacteriocins are a group of antibiotics produced by bacteria and are encoded by a group of naturally occurring plasmids, e.g. Col E1. Bacteriocins are toxic to bacteria closely related to the bacteriocin producing strain.
    GO:0015889    cobalamin transport    The directed movement of cobalamin (vitamin B12), a water-soluble vitamin characterized by possession of a corrin nucleus containing a cobalt atom, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0042914    colicin transport    The directed movement of a colicin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Colicins are a group of antibiotics produced by E. coli and related species that are encoded by a group of naturally occurring plasmids, e.g. Col E1.
    GO:0015031    protein transport    The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0044718    siderophore transmembrane transport    The directed movement of siderophores, low molecular weight Fe(III)-chelating substances, from one side of a membrane to the other, by means of some agent such as a transporter or pore.
    GO:0015891    siderophore transport    The directed movement of siderophores, low molecular weight Fe(III)-chelating substances, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0031233    intrinsic component of external side of plasma membrane    The component of a plasma membrane consisting of gene products and protein complexes that penetrate the external side of the plasma membrane only, either directly or via some covalently attached hydrophobic anchor.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0030288    outer membrane-bounded periplasmic space    The region between the inner (cytoplasmic or plasma) membrane and outer membrane of organisms with two membranes such as Gram negative bacteria. These periplasmic spaces are relatively thick and contain a thin peptidoglycan layer (PGL), also referred to as a thin cell wall.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FHUA_ECOLI | P069711by3 1by5 1fcp 1fi1 1qff 1qfg 1qjq 1qkc 2fcp 4cu4
        TONB_ECOLI | P029291ihr 1qxx 1u07 1xx3 2gsk

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 2GRX)