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(-) Description

Title :  CRYSTAL STRUCTURE OF ECTROMELIA VIRUS EVM1 CHEMOKINE BINDING PROTEIN
 
Authors :  P. L. Arnold, D. H. Fremont
Date :  24 Apr 06  (Deposition) - 09 May 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Viral Protein, Chemokine Binding Protein, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. L. Arnold, D. H. Fremont
Structural Determinants Of Chemokine Binding By An Ectromelia Virus-Encoded Decoy Receptor.
J. Virol. V. 80 7439 2006
PubMed-ID: 16840324  |  Reference-DOI: 10.1128/JVI.00576-06

(-) Compounds

Molecule 1 - EVM001
    Chains: A, B
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Gene: EVM001
    Organism Scientific: ECTROMELIA VIRUS
    Organism Taxid: 265874
    Strain: MOSCOW

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2GRK)

(-) Sites  (0, 0)

(no "Site" information available for 2GRK)

(-) SS Bonds  (8, 8)

Asymmetric Unit
No.Residues
1A:13 -A:192
2A:43 -A:230
3A:86 -A:131
4A:139 -A:178
5B:13 -B:192
6B:43 -B:230
7B:86 -B:131
8B:139 -B:178

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2GRK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 2GRK)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:228
 aligned with Q9JFS0_9POXV | Q9JFS0 from UniProtKB/TrEMBL  Length:247

    Alignment length:228
                                                                                                                                                                                                                                                         247    
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243   |    
         Q9JFS0_9POXV    24 SFASSCTEEENNHHMGIDVIIKVTKQDQTPTNDKICQSVTEVTESEDDGVSEEVVKGDPTTYYTVVGGGLRMNFGFTKCPQIKSISESADGNTVNARLSSVSPMYGIESPAITHEEALAMINDCAVSINIKCSEEEKDSNIKTHPVLGSNISHKKVRYEDIIGSTIVDIKCVKDLEFSVRIGDMCKEASELEVKDGFKYIDGSVSEGATDDTSLIDSTKLKACV----   -
               SCOP domains d2grka_ A: automated matches                                                                                                                                                                                                         SCOP domains
               CATH domains 2grkA00 A:8-235 Viral Chemokine Inhibitor; Chain A                                                                                                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .ee...........eeeeeeeeeee............eeeeeee...............eeeeeeee..eeeeeeee......eeeeeee..eeeeeee..hhhhh..ee..hhhhhhhhhhhheeeeeeee........................ee...eeeeeee...eeeeeeeeeeee....hhhh.eeeeeeee..eeee.........hhhhhee..ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2grk A   8 SFASSCTEEENNHHMGIDVIIKVTKQDQTPTNDKICQSVTEVTESEDDGVSEEVVKGDPTTYYTVVGGGLRMNFGFTKCPQIKSISESADGNTVNARLSSVSPMYGIESPAITHEEALAMINDCAVSINIKCSEEEKDSNIKTHPVLGSNISHKKVRYEDIIGSTIVDIKCVKDLEFSVRIGDMCKEASELEVKDGFKYIDGSVSEGATDDTSLIDSTKLKACVGSLV 235
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227        


Chain B from PDB  Type:PROTEIN  Length:228
 aligned with Q9JFS0_9POXV | Q9JFS0 from UniProtKB/TrEMBL  Length:247

    Alignment length:228
                                                                                                                                                                                                                                                         247    
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243   |    
         Q9JFS0_9POXV    24 SFASSCTEEENNHHMGIDVIIKVTKQDQTPTNDKICQSVTEVTESEDDGVSEEVVKGDPTTYYTVVGGGLRMNFGFTKCPQIKSISESADGNTVNARLSSVSPMYGIESPAITHEEALAMINDCAVSINIKCSEEEKDSNIKTHPVLGSNISHKKVRYEDIIGSTIVDIKCVKDLEFSVRIGDMCKEASELEVKDGFKYIDGSVSEGATDDTSLIDSTKLKACV----   -
               SCOP domains d2grkb_ B: automated matches                                                                                                                                                                                                         SCOP domains
               CATH domains 2grkB00 B:8-235 Viral Chemokine Inhibitor; Chain A                                                                                                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........eeeeeeeeeeeeee............eeeeeee...............eeeeeeee..eeeeeeee......eeeeeee..eeeeeee..hhhhh....eeehhhhhhhhhhheeeeeeee........................ee...eeeeeee...eeeeeeeeeeee.........eeeeeeee..eeee.........hhhhhee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2grk B   8 SFASSCTEEENNHHMGIDVIIKVTKQDQTPTNDKICQSVTEVTESEDDGVSEEVVKGDPTTYYTVVGGGLRMNFGFTKCPQIKSISESADGNTVNARLSSVSPMYGIESPAITHEEALAMINDCAVSINIKCSEEEKDSNIKTHPVLGSNISHKKVRYEDIIGSTIVDIKCVKDLEFSVRIGDMCKEASELEVKDGFKYIDGSVSEGATDDTSLIDSTKLKACVGSLV 235
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2GRK)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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 Related Entries

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(-) Related Entries Specified in the PDB File

1cq3 STRUCTURE OF A SOLUBLE SECRETED CHEMOKINE INHIBITOR, VCCI, FROM COWPOX VIRUS