Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit - manually
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit - manually
Asym./Biol. Unit - manually  (Jmol Viewer)
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF (3R)-HYDROXYACYL-ACYL CARRIER PROTEIN DEHYDRATASE(FABZ) FROM HELICOBACTER PYLORI
 
Authors :  L. Zhang, W. Liu, X. Shen, H. Jiang
Date :  05 Apr 06  (Deposition) - 13 Mar 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Fabz, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Zhang, W. Liu, T. Hu, L. Du, C. Luo, K. Chen, X. Shen, H. Jiang
Structural Basis For Catalytic And Inhibitory Mechanisms Of Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz).
J. Biol. Chem. V. 283 5370 2008
PubMed-ID: 18093984  |  Reference-DOI: 10.1074/JBC.M705566200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - (3R)-HYDROXYMYRISTOYL-ACYL CARRIER PROTEIN DEHYDRATASE
    Chains: A, B, C, D, E, F
    EC Number: 4.2.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE30
    Expression System Strain: M15
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: FABZ
    Organism Scientific: HELICOBACTER PYLORI
    Organism Taxid: 102617
    Strain: SS1
    Synonym: FABZ

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 14)

Asymmetric/Biological Unit (2, 14)
No.NameCountTypeFull Name
1BEN8Ligand/IonBENZAMIDINE
2CL6Ligand/IonCHLORIDE ION

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:58 , GLY A:67 , HOH B:2018BINDING SITE FOR RESIDUE CL A 1001
02AC2SOFTWAREHIS B:58 , GLY B:67 , HOH B:2072BINDING SITE FOR RESIDUE CL B 1002
03AC3SOFTWAREHIS C:58 , GLY C:67BINDING SITE FOR RESIDUE CL C 1003
04AC4SOFTWAREHIS D:58 , PRO D:66 , GLY D:67BINDING SITE FOR RESIDUE CL D 1004
05AC5SOFTWAREHIS E:58 , GLY E:67BINDING SITE FOR RESIDUE CL E 1005
06AC6SOFTWAREHOH E:2110 , HOH E:2111 , GLY F:67BINDING SITE FOR RESIDUE CL F 1006
07AC7SOFTWARETHR A:138 , VAL A:145 , GLU A:148 , GLN E:40 , GLU E:124 , VAL E:125 , LEU E:126BINDING SITE FOR RESIDUE BEN A 2001
08AC8SOFTWARETRP B:87 , GLY B:88 , HOH B:2052 , LEU E:86 , GLY E:130 , MET E:131BINDING SITE FOR RESIDUE BEN B 2003
09AC9SOFTWAREILE B:20 , LEU B:21 , PRO B:22 , HIS B:23 , LYS B:97 , ILE B:98 , VAL B:99 , ARG B:158BINDING SITE FOR RESIDUE BEN B 2006
10BC1SOFTWAREALA C:38 , THR C:84 , SER C:85 , LEU C:86 , TRP C:87 , GLY C:88 , GLN D:40BINDING SITE FOR RESIDUE BEN C 2002
11BC2SOFTWAREILE C:20 , LEU C:21 , PRO C:22 , HIS C:23 , PHE C:83 , ALA C:94 , LYS C:97 , ILE C:98 , VAL C:99 , ARG C:158 , HOH C:2101 , HOH C:2103BINDING SITE FOR RESIDUE BEN C 2007
12BC3SOFTWAREHOH A:2106 , LEU E:126 , GLY E:137 , ALA E:149 , GLU E:150 , BEN E:2005BINDING SITE FOR RESIDUE BEN E 2004
13BC4SOFTWAREGLN A:40 , GLU A:124 , VAL A:125 , THR E:138 , VAL E:145 , GLU E:148 , BEN E:2004BINDING SITE FOR RESIDUE BEN E 2005
14BC5SOFTWAREMET A:131 , MET A:154 , ILE A:155 , LEU F:86 , TRP F:87 , HOH F:2082BINDING SITE FOR RESIDUE BEN F 2008

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2GLL)

(-) Cis Peptide Bonds  (12, 12)

Asymmetric/Biological Unit
No.Residues
1Tyr A:25 -Pro A:26
2His A:58 -Phe A:59
3Tyr B:25 -Pro B:26
4His B:58 -Phe B:59
5Tyr C:25 -Pro C:26
6His C:58 -Phe C:59
7Tyr D:25 -Pro D:26
8His D:58 -Phe D:59
9Tyr E:25 -Pro E:26
10His E:58 -Phe E:59
11Tyr F:25 -Pro F:26
12His F:58 -Phe F:59

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2GLL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2GLL)

(-) Exons   (0, 0)

(no "Exon" information available for 2GLL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:152
 aligned with FABZ_HELPY | O25928 from UniProtKB/Swiss-Prot  Length:159

    Alignment length:152
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157  
           FABZ_HELPY     8 LQSQFFIEHILQILPHRYPMLLVDRIIELQANKKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQTGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAERD 159
               SCOP domains d2glla_ A: (3R)-hydroxymyristoyl ACP dehydrase FabZ                                                                                                      SCOP domains
               CATH domains 2gllA00 A:8-159  [code=3.10.129.10, no name defined]                                                                                                     CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eehhhhhhhh..........eeeeee...eeeeeee.....hhhhhh.......hhhhhhhhhhhhhhhhhhhhhhh.hhhhhh.eeeeeeeeeeeee........eeeeeeeeeee...eeeeeeeeee..eeeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gll A   8 LQSQFFIEHILQILPHRYPMLLVDRITELQANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAERE 159
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157  


Chain A from PDB  Type:PROTEIN  Length:152
 aligned with Q5G940_HELPX | Q5G940 from UniProtKB/TrEMBL  Length:159

    Alignment length:152
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157  
         Q5G940_HELPX     8 LQSQFFIEHILQILPHRYPMLLVDRITELQANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAERE 159
               SCOP domains d2glla_ A: (3R)-hydroxymyristoyl ACP dehydrase FabZ                                                                                                      SCOP domains
               CATH domains 2gllA00 A:8-159  [code=3.10.129.10, no name defined]                                                                                                     CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eehhhhhhhh..........eeeeee...eeeeeee.....hhhhhh.......hhhhhhhhhhhhhhhhhhhhhhh.hhhhhh.eeeeeeeeeeeee........eeeeeeeeeee...eeeeeeeeee..eeeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gll A   8 LQSQFFIEHILQILPHRYPMLLVDRITELQANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAERE 159
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157  


Chain B from PDB  Type:PROTEIN  Length:149
 aligned with FABZ_HELPY | O25928 from UniProtKB/Swiss-Prot  Length:159

    Alignment length:149
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150         
           FABZ_HELPY    11 QFFIEHILQILPHRYPMLLVDRIIELQANKKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQTGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAERD 159
               SCOP domains d2gllb_ B: (3R)-hydroxymyristoyl ACP dehydrase FabZ                                                                                                   SCOP domains
               CATH domains 2gllB00 B:11-159  [code=3.10.129.10, no name defined]                                                                                                 CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhh..........eeeeee...eeeeeee....hhhhhh........hhhhhhhhhhhhhhhhhhhhhhh.hhhhhh.eeeeeeeeeeeee........eeeeeeeeeeee..eeeeeeeeee..eeeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gll B  11 QFFIEHILQILPHRYPMLLVDRITELQANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAERE 159
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150         


Chain B from PDB  Type:PROTEIN  Length:149
 aligned with Q5G940_HELPX | Q5G940 from UniProtKB/TrEMBL  Length:159

    Alignment length:149
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150         
         Q5G940_HELPX    11 QFFIEHILQILPHRYPMLLVDRITELQANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAERE 159
               SCOP domains d2gllb_ B: (3R)-hydroxymyristoyl ACP dehydrase FabZ                                                                                                   SCOP domains
               CATH domains 2gllB00 B:11-159  [code=3.10.129.10, no name defined]                                                                                                 CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhh..........eeeeee...eeeeeee....hhhhhh........hhhhhhhhhhhhhhhhhhhhhhh.hhhhhh.eeeeeeeeeeeee........eeeeeeeeeeee..eeeeeeeeee..eeeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gll B  11 QFFIEHILQILPHRYPMLLVDRITELQANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAERE 159
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150         


Chain C from PDB  Type:PROTEIN  Length:151
 aligned with FABZ_HELPY | O25928 from UniProtKB/Swiss-Prot  Length:159

    Alignment length:151
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158 
           FABZ_HELPY     9 QSQFFIEHILQILPHRYPMLLVDRIIELQANKKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQTGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAERD 159
               SCOP domains d2gllc_ C: (3R)-hydroxymyristoyl ACP dehydrase FabZ                                                                                                     SCOP domains
               CATH domains 2gllC00 C:9-159  [code=3.10.129.10, no name defined]                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhh..........eeeeee...eeeeeee....hhhhhh........hhhhhhhhhhhhhhhhhhhhhhh.hhhhhh.eeeeeeeeeeeee........eeeeeeeeeeee..eeeeeeeeee..eeeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gll C   9 QSQFFIEHILQILPHRYPMLLVDRITELQANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAERE 159
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158 


Chain C from PDB  Type:PROTEIN  Length:151
 aligned with Q5G940_HELPX | Q5G940 from UniProtKB/TrEMBL  Length:159

    Alignment length:151
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158 
         Q5G940_HELPX     9 QSQFFIEHILQILPHRYPMLLVDRITELQANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAERE 159
               SCOP domains d2gllc_ C: (3R)-hydroxymyristoyl ACP dehydrase FabZ                                                                                                     SCOP domains
               CATH domains 2gllC00 C:9-159  [code=3.10.129.10, no name defined]                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhh..........eeeeee...eeeeeee....hhhhhh........hhhhhhhhhhhhhhhhhhhhhhh.hhhhhh.eeeeeeeeeeeee........eeeeeeeeeeee..eeeeeeeeee..eeeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gll C   9 QSQFFIEHILQILPHRYPMLLVDRITELQANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAERE 159
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158 


Chain D from PDB  Type:PROTEIN  Length:152
 aligned with FABZ_HELPY | O25928 from UniProtKB/Swiss-Prot  Length:159

    Alignment length:152
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157  
           FABZ_HELPY     8 LQSQFFIEHILQILPHRYPMLLVDRIIELQANKKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQTGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAERD 159
               SCOP domains d2glld_ D: (3R)-hydroxymyristoyl ACP dehydrase FabZ                                                                                                      SCOP domains
               CATH domains 2gllD00 D:8-159  [code=3.10.129.10, no name defined]                                                                                                     CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhh..........eeeeee...eeeeeee....hhhhhh........hhhhhhhhhhhhhhhhhhhhhhh.hhhhhh.eeeeeeeeeeeee........eeeeeeeeeeee..eeeeeeeeee..eeeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gll D   8 LQSQFFIEHILQILPHRYPMLLVDRITELQANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAERE 159
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157  


Chain D from PDB  Type:PROTEIN  Length:152
 aligned with Q5G940_HELPX | Q5G940 from UniProtKB/TrEMBL  Length:159

    Alignment length:152
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157  
         Q5G940_HELPX     8 LQSQFFIEHILQILPHRYPMLLVDRITELQANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAERE 159
               SCOP domains d2glld_ D: (3R)-hydroxymyristoyl ACP dehydrase FabZ                                                                                                      SCOP domains
               CATH domains 2gllD00 D:8-159  [code=3.10.129.10, no name defined]                                                                                                     CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhh..........eeeeee...eeeeeee....hhhhhh........hhhhhhhhhhhhhhhhhhhhhhh.hhhhhh.eeeeeeeeeeeee........eeeeeeeeeeee..eeeeeeeeee..eeeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gll D   8 LQSQFFIEHILQILPHRYPMLLVDRITELQANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAERE 159
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157  


Chain E from PDB  Type:PROTEIN  Length:151
 aligned with FABZ_HELPY | O25928 from UniProtKB/Swiss-Prot  Length:159

    Alignment length:151
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158 
           FABZ_HELPY     9 QSQFFIEHILQILPHRYPMLLVDRIIELQANKKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQTGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAERD 159
               SCOP domains d2glle_ E: (3R)-hydroxymyristoyl ACP dehydrase FabZ                                                                                                     SCOP domains
               CATH domains 2gllE00 E:9-159  [code=3.10.129.10, no name defined]                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhh..........eeeeee...eeeeeee....hhhhhh........hhhhhhhhhhhhhhhhhhhhhhh.hhhhhh.eeeeeeeeeeeee........eeeeeeeeeeee..eeeeeeeeee..eeeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gll E   9 QSQFFIEHILQILPHRYPMLLVDRITELQANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAERE 159
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158 


Chain E from PDB  Type:PROTEIN  Length:151
 aligned with Q5G940_HELPX | Q5G940 from UniProtKB/TrEMBL  Length:159

    Alignment length:151
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158 
         Q5G940_HELPX     9 QSQFFIEHILQILPHRYPMLLVDRITELQANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAERE 159
               SCOP domains d2glle_ E: (3R)-hydroxymyristoyl ACP dehydrase FabZ                                                                                                     SCOP domains
               CATH domains 2gllE00 E:9-159  [code=3.10.129.10, no name defined]                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhh..........eeeeee...eeeeeee....hhhhhh........hhhhhhhhhhhhhhhhhhhhhhh.hhhhhh.eeeeeeeeeeeee........eeeeeeeeeeee..eeeeeeeeee..eeeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gll E   9 QSQFFIEHILQILPHRYPMLLVDRITELQANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAERE 159
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158 


Chain F from PDB  Type:PROTEIN  Length:147
 aligned with FABZ_HELPY | O25928 from UniProtKB/Swiss-Prot  Length:159

    Alignment length:147
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       
           FABZ_HELPY    11 QFFIEHILQILPHRYPMLLVDRIIELQANKKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQTGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAE 157
               SCOP domains d2gllf_ F: (3R)-hydroxymyristoyl ACP dehydrase FabZ                                                                                                 SCOP domains
               CATH domains 2gllF00 F:11-157  [code=3.10.129.10, no name defined]                                                                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhh..........eeeeee...eeeeeee....hhhhhh........hhhhhhhhhhhhhhhhhhhhhhh.hhhhhh..eeeeeeeeeeee........eeeeeeeeeeee..eeeeeeeeee..eeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gll F  11 QFFIEHILQILPHRYPMLLVDRITELQANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAE 157
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       


Chain F from PDB  Type:PROTEIN  Length:147
 aligned with Q5G940_HELPX | Q5G940 from UniProtKB/TrEMBL  Length:159

    Alignment length:147
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       
         Q5G940_HELPX    11 QFFIEHILQILPHRYPMLLVDRITELQANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAE 157
               SCOP domains d2gllf_ F: (3R)-hydroxymyristoyl ACP dehydrase FabZ                                                                                                 SCOP domains
               CATH domains 2gllF00 F:11-157  [code=3.10.129.10, no name defined]                                                                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhh..........eeeeee...eeeeeee....hhhhhh........hhhhhhhhhhhhhhhhhhhhhhh.hhhhhh..eeeeeeeeeeee........eeeeeeeeeeee..eeeeeeeeee..eeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gll F  11 QFFIEHILQILPHRYPMLLVDRITELQANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAE 157
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2GLL)

(-) Gene Ontology  (8, 16)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (Q5G940_HELPX | Q5G940)
molecular function
    GO:0019171    3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity    Catalysis of the reaction: a (3R)-3-hydroxyacyl-[acyl-carrier protein] = H2O + a trans-delta2-enoyl-acyl-[acyl-carrier protein].
    GO:0047451    3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity    Catalysis of the reaction: (3R)-3-hydroxyoctanoyl-[acyl-carrier protein] = H2O + 2-octenoyl-[acyl-carrier protein].
    GO:0016836    hydro-lyase activity    Catalysis of the cleavage of a carbon-oxygen bond by elimination of water.
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
biological process
    GO:0006633    fatty acid biosynthetic process    The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.
    GO:0009245    lipid A biosynthetic process    The chemical reactions and pathways resulting in the formation of lipid A, the glycolipid group of bacterial lipopolysaccharides, consisting of four to six fatty acyl chains linked to two glucosamine residues. Further modifications of the backbone are common.
    GO:0006629    lipid metabolic process    The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Chain A,B,C,D,E,F   (FABZ_HELPY | O25928)
molecular function
    GO:0019171    3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity    Catalysis of the reaction: a (3R)-3-hydroxyacyl-[acyl-carrier protein] = H2O + a trans-delta2-enoyl-acyl-[acyl-carrier protein].
    GO:0047451    3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity    Catalysis of the reaction: (3R)-3-hydroxyoctanoyl-[acyl-carrier protein] = H2O + 2-octenoyl-[acyl-carrier protein].
    GO:0016836    hydro-lyase activity    Catalysis of the cleavage of a carbon-oxygen bond by elimination of water.
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
biological process
    GO:0006633    fatty acid biosynthetic process    The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.
    GO:0009245    lipid A biosynthetic process    The chemical reactions and pathways resulting in the formation of lipid A, the glycolipid group of bacterial lipopolysaccharides, consisting of four to six fatty acyl chains linked to two glucosamine residues. Further modifications of the backbone are common.
    GO:0006629    lipid metabolic process    The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    BEN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    CL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    His A:58 - Phe A:59   [ RasMol ]  
    His B:58 - Phe B:59   [ RasMol ]  
    His C:58 - Phe C:59   [ RasMol ]  
    His D:58 - Phe D:59   [ RasMol ]  
    His E:58 - Phe E:59   [ RasMol ]  
    His F:58 - Phe F:59   [ RasMol ]  
    Tyr A:25 - Pro A:26   [ RasMol ]  
    Tyr B:25 - Pro B:26   [ RasMol ]  
    Tyr C:25 - Pro C:26   [ RasMol ]  
    Tyr D:25 - Pro D:26   [ RasMol ]  
    Tyr E:25 - Pro E:26   [ RasMol ]  
    Tyr F:25 - Pro F:26   [ RasMol ]  
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym./Biol. Unit PNG format | Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2gll
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  FABZ_HELPY | O25928
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  Q5G940_HELPX | Q5G940
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  4.2.1.-
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  FABZ_HELPY | O25928
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  Q5G940_HELPX | Q5G940
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FABZ_HELPY | O25928: 2glm 2glp 2glv
        Q5G940_HELPX | Q5G940: 2glm 2glp 2glv
UniProtKB/TrEMBL
        Q5G940_HELPX | Q5G940: 3b7j 3cf8 3cf9 3d04 3doy 3doz 3dp0 3dp1 3dp2 3dp3 3ed0 4zjb

(-) Related Entries Specified in the PDB File

2glm THE SAME PROTEIN COMPLEXED WITH 3-AMINO-3-BENZYL-[4.3.0] BICYCLO-1,6-DIAZANONAN-2-ONE
2glp THE SAME PROTEIN COMPLEXED WITH COMPOUND 1
2glv THE SAME PROTEIN, Y100A MUTANT