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(-) Description

Title :  CRYSTAL STRUCTURE OF (3R)-HYDROXYACYL-ACYL CARRIER PROTEIN DEHYDRATASE(FABZ) IN COMPLEX WITH HOLO-ACP FROM HELICOBACTER PYLORI
 
Authors :  L. Zhang, L. Zhang, X. Shen, H. Jiang
Date :  29 Apr 15  (Deposition) - 02 Nov 16  (Release) - 02 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.55
Chains :  Asym./Biol. Unit :  A,B,G
Keywords :  Fas, Fatty Acid Biosynthesis, Complex, Lyase-Biosynthetic Protein Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Zhang, L. Zhang, X. Shen, H. Jiang
Crystal Structure Of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase(Fabz) In Complex With Holo-Acp From Helicobacte Pylori
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - 3-HYDROXYACYL-[ACYL-CARRIER-PROTEIN] DEHYDRATASE FABZ
    Chains: A, B
    EC Number: 4.2.1.59
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: FABZ
    Organism Scientific: HELICOBACTER PYLORI
    Organism Taxid: 210
    Synonym: (3R)-HYDROXYMYRISTOYL-[ACYL-CARRIER-PROTEIN] DEHYDRATASE, BETA-HYDROXYACYL-ACP DEHYDRATASE
 
Molecule 2 - ACYL CARRIER PROTEIN
    Chains: G
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: ACPP, EG63_02640, HPY173_03440, HPY1786_00110, HPY1846_06495, HPY207_02635, HPY228_03880, HPY499_02145, JM68_05695
    Organism Scientific: HELICOBACTER PYLORI
    Organism Taxid: 210
    Synonym: ACP

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABG

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1CIT1Ligand/IonCITRIC ACID
2PNS1Ligand/Ion4'-PHOSPHOPANTETHEINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:26 , MET A:27 , ASN A:51 , VAL A:54 , LEU A:69 , PRO B:26 , MET B:27 , ASN B:51 , VAL B:54 , HOH B:601 , HOH B:626binding site for residue CIT B 501
2AC2SOFTWAREGLY A:67 , PHE A:109 , ARG A:110 , ILE A:111 , TYR B:100 , PHE B:101 , ASP G:35 , LEU G:37 , ASP G:38 , VAL G:39 , VAL G:40binding site for Di-peptide PNS G 401 and SER G 36

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZJB)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Tyr A:25 -Pro A:26
2His A:58 -Phe A:59
3Tyr B:25 -Pro B:26
4His B:58 -Phe B:59

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZJB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZJB)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZJB)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:150
                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhh..........eeeeee...eeeeeee.....hhhhhh.......hhhhhhhhhhhhhhhhhhhh....hhhhhh..eeeeeeeeeeee........eeeeeeeeeeee..eeeeeeeeee..eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4zjb A   9 QSQFFIEHILQILPHRYPMLLVDRITELQANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAER 158
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158


Chain B from PDB  Type:PROTEIN  Length:151
                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhh..........eeeeee...eeeeeee....hhhhhh........hhhhhhhhhhhhhhhhhhhhhhh.hhhhhh.eeeeeeeeeeeee........eeeeeeeeeeee..eeeeeeeeee..eeeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zjb B   9 QSQFFIEHILQILPHRYPMLLVDRITELQANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAERE 159
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158 


Chain G from PDB  Type:PROTEIN  Length:81
                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhh.hhhhh............hhhhhhhhhhhhhhhh....hhhhhh...hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                 4zjb G  -4 SMGYLMALFEDIQAVIAEQLNVDAAQVTPEAEFVKDLGADSLDVVELIMALEEKFGIEIPDEQAEKIVNVGDVVKYIEDNK  76
                                     5        15        25        35        45        55        65        75
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZJB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZJB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZJB)

(-) Gene Ontology  (11, 14)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    His A:58 - Phe A:59   [ RasMol ]  
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    Tyr A:25 - Pro A:26   [ RasMol ]  
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q5G940_HELPX | Q5G940: 2gll 2glm 2glp 2glv
UniProtKB/TrEMBL
        Q5G940_HELPX | Q5G940: 3b7j 3cf8 3cf9 3d04 3doy 3doz 3dp0 3dp1 3dp2 3dp3 3ed0

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4ZJB)