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(-) Description

Title :  CRYSTAL STRUCTURE OF SMU.848 FROM STREPTOCOCCUS MUTANS
 
Authors :  H. -F. Hou, Z. -Q. Gao, L. -F. Li, Y. -H. Liang, X. -D. Su, Y. -H. Dong
Date :  13 Feb 06  (Deposition) - 08 Aug 06  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  A (2x),B (2x),C (2x),D (2x)
Keywords :  2-Layer (Alpha-Beta)-Sandwich, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. -F. Hou, Z. -Q. Gao, J. -H. Xu, R. Xu, L. -Q. Li, L. -F. Li, Y. -H. Liang, X. -D. Su, P. Liu, D. -C. Xian, Y. -H. Dong
Crystal Structure Of Smu. 848 From Streptococcus Mutans
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN SMU.848
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET28(A)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: STREPTOCOCCUS MUTANS
    Organism Taxid: 1309

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD
Biological Unit 3 (2x): A (2x)B (2x)C (2x)D (2x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2G0J)

(-) Sites  (0, 0)

(no "Site" information available for 2G0J)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2G0J)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2G0J)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2G0J)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2G0J)

(-) Exons   (0, 0)

(no "Exon" information available for 2G0J)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:114
 aligned with Q8DUQ5_STRMU | Q8DUQ5 from UniProtKB/TrEMBL  Length:111

    Alignment length:114
                               1                                                                                                              
                               |     7        17        27        37        47        57        67        77        87        97       107    
         Q8DUQ5_STRMU     - ---MIQATFIRRKGILESVELTGHAGSGEYGFDIVCAAVSTLSMNLVNALEVLADCTVSLQMDEFDGGYMKIDLSYITNKSDEKVQLLFEAFLLGITNLAENSPEFVTAKIMTQ 111
               SCOP domains d2g0ja_ A: Hypothetical protein Smu.848                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeeeee..eeeeeeee......hhhhhhhhhhhhhhhhhhhhhhhhh...............eeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 2g0j A  -2 RGSMIQATFIRRKGILESVELTGHAGSGEYGFDIVCAAVSTLSMNLVNALEVLADCTVSLQMDEFDGGYMKIDLSYITNKSDEKVQLLFEAFLLGITNLAENSPEFVTAKIMTQ 111
                                     7        17        27        37        47        57        67        77        87        97       107    


Chain B from PDB  Type:PROTEIN  Length:112
 aligned with Q8DUQ5_STRMU | Q8DUQ5 from UniProtKB/TrEMBL  Length:111

    Alignment length:112
                             1                                                                                                              
                             |       9        19        29        39        49        59        69        79        89        99       109  
         Q8DUQ5_STRMU     - -MIQATFIRRKGILESVELTGHAGSGEYGFDIVCAAVSTLSMNLVNALEVLADCTVSLQMDEFDGGYMKIDLSYITNKSDEKVQLLFEAFLLGITNLAENSPEFVTAKIMTQ 111
               SCOP domains d2g0jb_ B: Hypothetical protein Smu.848                                                                          SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee..eeeeeeee.......hhhhhhhhhhhhhhhhhhhhhhhh.....eeeee.....eeeee........hhhhhhhhhhhhhhhhhhhhhh...eeeeeeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 2g0j B   0 SMIQATFIRRKGILESVELTGHAGSGEYGFDIVCAAVSTLSMNLVNALEVLADCTVSLQMDEFDGGYMKIDLSYITNKSDEKVQLLFEAFLLGITNLAENSPEFVTAKIMTQ 111
                                     9        19        29        39        49        59        69        79        89        99       109  


Chain C from PDB  Type:PROTEIN  Length:116
 aligned with Q8DUQ5_STRMU | Q8DUQ5 from UniProtKB/TrEMBL  Length:111

    Alignment length:116
                                 1                                                                                                              
                                 |   5        15        25        35        45        55        65        75        85        95       105      
         Q8DUQ5_STRMU     - -----MIQATFIRRKGILESVELTGHAGSGEYGFDIVCAAVSTLSMNLVNALEVLADCTVSLQMDEFDGGYMKIDLSYITNKSDEKVQLLFEAFLLGITNLAENSPEFVTAKIMTQ 111
               SCOP domains d2g0jc_ C: Hypothetical protein Smu.848                                                                              SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeee..eeeeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee.....eeeee....hhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 2g0j C  -4 MGRGSMIQATFIRRKGILESVELTGHAGSGEYGFDIVCAAVSTLSMNLVNALEVLADCTVSLQMDEFDGGYMKIDLSYITNKSDEKVQLLFEAFLLGITNLAENSPEFVTAKIMTQ 111
                                     5        15        25        35        45        55        65        75        85        95       105      


Chain D from PDB  Type:PROTEIN  Length:113
 aligned with Q8DUQ5_STRMU | Q8DUQ5 from UniProtKB/TrEMBL  Length:111

    Alignment length:113
                              1                                                                                                              
                              |      8        18        28        38        48        58        68        78        88        98       108   
         Q8DUQ5_STRMU     - --MIQATFIRRKGILESVELTGHAGSGEYGFDIVCAAVSTLSMNLVNALEVLADCTVSLQMDEFDGGYMKIDLSYITNKSDEKVQLLFEAFLLGITNLAENSPEFVTAKIMTQ 111
               SCOP domains d2g0jd_ D: Hypothetical protein Smu.848                                                                           SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee...eeeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhh....eeeee.....eeeee........hhhhhhhhhhhhhhhhhhhhhh...eeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 2g0j D  -1 GSMIQATFIRRKGILESVELTGHAGSGEYGFDIVCAAVSTLSMNLVNALEVLADCTVSLQMDEFDGGYMKIDLSYITNKSDEKVQLLFEAFLLGITNLAENSPEFVTAKIMTQ 111
                                     8        18        28        38        48        58        68        78        88        98       108
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2G0J)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2G0J)

(-) Gene Ontology  (0, 0)

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 Related Entries

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(-) Related Entries Specified in the PDB File

2g0i