2FSS - JenaLib

Asym.Unit - manually (Jmol Viewer)

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   CANDIDA BOIDINII FORMATE DEHYDROGENASE (FDH) K47E MUTANT

Authors :   K. Schirwitz, A. Schmidt, V. S. Lamzin

Date :   23 Jan 06 (Deposition) - 13 Feb 07 (Release) - 28 Apr 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.70

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,D  (1x)
Biol. Unit 2: B,C  (1x)
Biol. Unit 3: A (1x),B (1x),C (1x),D (1x)

Keywords :   Rossmann Fold, Protein Homo Dimer, Nad Binding Site, Formate Binding Site, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. Schirwitz, A. Schmidt, V. S. Lamzin
High-Resolution Structures Of Formate Dehydrogenase From Candida Boidinii.
Protein Sci. V. 16 1146 2007
PubMed-ID: 17525463 | Reference-DOI: 10.1110/PS.062741707
(for further references see the PDB file header)

Molecule 1 - FORMATE DEHYDROGENASE
	Chains	:	A, B, C, D
	EC Number	:	1.2.1.2
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PTRCHIS2A, PVLKS3
	Expression System Strain	:	ROSETTA(DE3)PLYSS
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	CBFDH
	Mutation	:	YES
	Organism Scientific	:	CANDIDA BOIDINII
	Organism Taxid	:	5477

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A			D
Biological Unit 2 (1x)	:		B	C
Biological Unit 3 (1x)	:	A (1x)	B (1x)	C (1x)	D (1x)

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 5)

No.	Name	Count	Type	Full Name
1	SO4	5	Ligand/Ion	SULFATE ION

Biological Unit 1 (1, 3)

No.	Name	Count	Type	Full Name
1	SO4	3	Ligand/Ion	SULFATE ION

Biological Unit 2 (1, 2)

No.	Name	Count	Type	Full Name
1	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 3 (1, 3)

No.	Name	Count	Type	Full Name
1	SO4	3	Ligand/Ion	SULFATE ION

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY D:173 , ARG D:174 , HOH D:2018	BINDING SITE FOR RESIDUE SO4 D 2001
2	AC2	SOFTWARE	LYS A:109 , GLN C:197 , ALA C:198 , ARG C:211 , HOH C:2034 , HOH C:2192	BINDING SITE FOR RESIDUE SO4 C 2002
3	AC3	SOFTWARE	ALA A:198 , ARG A:211 , HOH A:2021 , LYS C:109	BINDING SITE FOR RESIDUE SO4 A 2003
4	AC4	SOFTWARE	GLY C:173 , ARG C:174 , HOH C:2047	BINDING SITE FOR RESIDUE SO4 C 2004
5	AC5	SOFTWARE	GLY A:173 , ARG A:174 , HOH A:2056 , HOH A:2199	BINDING SITE FOR RESIDUE SO4 A 2005

(no "SS Bond" information available for 2FSS)

Asymmetric Unit

No.	Residues
1	Glu A:48	-	Gly A:49
2	Phe A:285	-	Pro A:286
3	Gln A:287	-	Pro A:288
4	Glu B:48	-	Gly B:49
5	Gly B:49	-	Gly B:50
6	Gly B:50	-	Asn B:51
7	Phe B:285	-	Pro B:286
8	Gln B:287	-	Pro B:288
9	Glu C:48	-	Gly C:49
10	Pro C:71	-	Ala C:72
11	Phe C:285	-	Pro C:286
12	Gln C:287	-	Pro C:288
13	Phe D:285	-	Pro D:286
14	Gln D:287	-	Pro D:288

Asymmetric Unit (12, 47)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_FDH_CANBO_001 *	D	9	G	FDH_CANBO	---	---	A/B/C	D	9	G
02	UniProt	VAR_FDH_CANBO_002 *	E	53	V	FDH_CANBO	---	---	A/B/C/D	V	53	V
03	UniProt	VAR_FDH_CANBO_003 *	K	56	Q	FDH_CANBO	---	---	A/B/C/D	Q	56	Q
04	UniProt	VAR_FDH_CANBO_004 *	L	79	I	FDH_CANBO	---	---	A/B/C/D	I	79	I
05	UniProt	VAR_FDH_CANBO_005 *	N	84	K	FDH_CANBO	---	---	A/B/C/D	K	84	K
06	UniProt	VAR_FDH_CANBO_006 *	L	87	S	FDH_CANBO	---	---	A/B/C/D	L	87	S
07	UniProt	VAR_FDH_CANBO_007 *	K	108	R	FDH_CANBO	---	---	A/B/C/D	K	108	R
08	UniProt	VAR_FDH_CANBO_008 *	I	145	N	FDH_CANBO	---	---	A/B/C/D	I	145	N
09	UniProt	VAR_FDH_CANBO_009 *	L	184	V	FDH_CANBO	---	---	A/B/C/D	V	184	V
10	UniProt	VAR_FDH_CANBO_010 *	E	202	D	FDH_CANBO	---	---	A/B/C/D	D	202	D
11	UniProt	VAR_FDH_CANBO_011 *	M	308	T	FDH_CANBO	---	---	A/B/C/D	M	308	T
12	UniProt	VAR_FDH_CANBO_012 *	E	325	Q	FDH_CANBO	---	---	A/B/C/D	Q	325	Q
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (12, 23)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_FDH_CANBO_001 *	D	9	G	FDH_CANBO	---	---	A	D	9	G
02	UniProt	VAR_FDH_CANBO_002 *	E	53	V	FDH_CANBO	---	---	A/D	V	53	V
03	UniProt	VAR_FDH_CANBO_003 *	K	56	Q	FDH_CANBO	---	---	A/D	Q	56	Q
04	UniProt	VAR_FDH_CANBO_004 *	L	79	I	FDH_CANBO	---	---	A/D	I	79	I
05	UniProt	VAR_FDH_CANBO_005 *	N	84	K	FDH_CANBO	---	---	A/D	K	84	K
06	UniProt	VAR_FDH_CANBO_006 *	L	87	S	FDH_CANBO	---	---	A/D	L	87	S
07	UniProt	VAR_FDH_CANBO_007 *	K	108	R	FDH_CANBO	---	---	A/D	K	108	R
08	UniProt	VAR_FDH_CANBO_008 *	I	145	N	FDH_CANBO	---	---	A/D	I	145	N
09	UniProt	VAR_FDH_CANBO_009 *	L	184	V	FDH_CANBO	---	---	A/D	V	184	V
10	UniProt	VAR_FDH_CANBO_010 *	E	202	D	FDH_CANBO	---	---	A/D	D	202	D
11	UniProt	VAR_FDH_CANBO_011 *	M	308	T	FDH_CANBO	---	---	A/D	M	308	T
12	UniProt	VAR_FDH_CANBO_012 *	E	325	Q	FDH_CANBO	---	---	A/D	Q	325	Q
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (12, 24)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_FDH_CANBO_001 *	D	9	G	FDH_CANBO	---	---	B/C	D	9	G
02	UniProt	VAR_FDH_CANBO_002 *	E	53	V	FDH_CANBO	---	---	B/C	V	53	V
03	UniProt	VAR_FDH_CANBO_003 *	K	56	Q	FDH_CANBO	---	---	B/C	Q	56	Q
04	UniProt	VAR_FDH_CANBO_004 *	L	79	I	FDH_CANBO	---	---	B/C	I	79	I
05	UniProt	VAR_FDH_CANBO_005 *	N	84	K	FDH_CANBO	---	---	B/C	K	84	K
06	UniProt	VAR_FDH_CANBO_006 *	L	87	S	FDH_CANBO	---	---	B/C	L	87	S
07	UniProt	VAR_FDH_CANBO_007 *	K	108	R	FDH_CANBO	---	---	B/C	K	108	R
08	UniProt	VAR_FDH_CANBO_008 *	I	145	N	FDH_CANBO	---	---	B/C	I	145	N
09	UniProt	VAR_FDH_CANBO_009 *	L	184	V	FDH_CANBO	---	---	B/C	V	184	V
10	UniProt	VAR_FDH_CANBO_010 *	E	202	D	FDH_CANBO	---	---	B/C	D	202	D
11	UniProt	VAR_FDH_CANBO_011 *	M	308	T	FDH_CANBO	---	---	B/C	M	308	T
12	UniProt	VAR_FDH_CANBO_012 *	E	325	Q	FDH_CANBO	---	---	B/C	Q	325	Q
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 3 (12, 47)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_FDH_CANBO_001 *	D	9	G	FDH_CANBO	---	---	A/B/C	D	9	G
02	UniProt	VAR_FDH_CANBO_002 *	E	53	V	FDH_CANBO	---	---	A/B/C/D	V	53	V
03	UniProt	VAR_FDH_CANBO_003 *	K	56	Q	FDH_CANBO	---	---	A/B/C/D	Q	56	Q
04	UniProt	VAR_FDH_CANBO_004 *	L	79	I	FDH_CANBO	---	---	A/B/C/D	I	79	I
05	UniProt	VAR_FDH_CANBO_005 *	N	84	K	FDH_CANBO	---	---	A/B/C/D	K	84	K
06	UniProt	VAR_FDH_CANBO_006 *	L	87	S	FDH_CANBO	---	---	A/B/C/D	L	87	S
07	UniProt	VAR_FDH_CANBO_007 *	K	108	R	FDH_CANBO	---	---	A/B/C/D	K	108	R
08	UniProt	VAR_FDH_CANBO_008 *	I	145	N	FDH_CANBO	---	---	A/B/C/D	I	145	N
09	UniProt	VAR_FDH_CANBO_009 *	L	184	V	FDH_CANBO	---	---	A/B/C/D	V	184	V
10	UniProt	VAR_FDH_CANBO_010 *	E	202	D	FDH_CANBO	---	---	A/B/C/D	D	202	D
11	UniProt	VAR_FDH_CANBO_011 *	M	308	T	FDH_CANBO	---	---	A/B/C/D	M	308	T
12	UniProt	VAR_FDH_CANBO_012 *	E	325	Q	FDH_CANBO	---	---	A/B/C/D	Q	325	Q
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (3, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	D_2_HYDROXYACID_DH_1	PS00065	D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature.	FDH_CANBO	167-195	4	A:167-195 B:167-195 C:167-195 D:167-195
2	D_2_HYDROXYACID_DH_2	PS00670	D-isomer specific 2-hydroxyacid dehydrogenases signature 2.	FDH_CANBO	218-240	4	A:218-240 B:218-240 C:218-240 D:218-240
3	D_2_HYDROXYACID_DH_3	PS00671	D-isomer specific 2-hydroxyacid dehydrogenases signature 3.	FDH_CANBO	247-263	4	A:247-263 B:247-263 C:247-263 D:247-263

Biological Unit 1 (3, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	D_2_HYDROXYACID_DH_1	PS00065	D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature.	FDH_CANBO	167-195	2	A:167-195 - - D:167-195
2	D_2_HYDROXYACID_DH_2	PS00670	D-isomer specific 2-hydroxyacid dehydrogenases signature 2.	FDH_CANBO	218-240	2	A:218-240 - - D:218-240
3	D_2_HYDROXYACID_DH_3	PS00671	D-isomer specific 2-hydroxyacid dehydrogenases signature 3.	FDH_CANBO	247-263	2	A:247-263 - - D:247-263

Biological Unit 2 (3, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	D_2_HYDROXYACID_DH_1	PS00065	D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature.	FDH_CANBO	167-195	2	- B:167-195 C:167-195 -
2	D_2_HYDROXYACID_DH_2	PS00670	D-isomer specific 2-hydroxyacid dehydrogenases signature 2.	FDH_CANBO	218-240	2	- B:218-240 C:218-240 -
3	D_2_HYDROXYACID_DH_3	PS00671	D-isomer specific 2-hydroxyacid dehydrogenases signature 3.	FDH_CANBO	247-263	2	- B:247-263 C:247-263 -

Biological Unit 3 (3, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	D_2_HYDROXYACID_DH_1	PS00065	D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature.	FDH_CANBO	167-195	4	A:167-195 B:167-195 C:167-195 D:167-195
2	D_2_HYDROXYACID_DH_2	PS00670	D-isomer specific 2-hydroxyacid dehydrogenases signature 2.	FDH_CANBO	218-240	4	A:218-240 B:218-240 C:218-240 D:218-240
3	D_2_HYDROXYACID_DH_3	PS00671	D-isomer specific 2-hydroxyacid dehydrogenases signature 3.	FDH_CANBO	247-263	4	A:247-263 B:247-263 C:247-263 D:247-263

(no "Exon" information available for 2FSS)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:353
 aligned with FDH_CANBO | O13437 from UniProtKB/Swiss-Prot  Length:364

    Alignment length:353
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350   
            FDH_CANBO     1 MKIVLVLYDAGKHAADEEKLYGCTENKLGIANWLKDQGHELITTSDKEGETSELDKHIPDADIIITTPFHPAYITKERLDKAKNLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLLPFNPKELLYYDYQALPKEAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTTLDAQTRYAEGTKNILESFFTGKFDYRPQDIILLNGEY 353
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee....hhhhhhh........hhhhhhhhhhhh..eeeee.......hhhhhhhhhh.eeee........hhhhhhhh....eeee........hhhhhhhhh...eeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhh........eeeee..hhhhhhhhhhhhhhh..eeeee.....hhhhhhhh.eee..hhhhhhh...eeee............hhhhhhh....eeeee..hhhhhhhhhhhhhhhh..eeeeee...........hhhhhh.......eee...hhhhhhhhhhhhhhhhhhhhhhhhh.....hhh.eeee..ee Sec.struct. author
                 SAPs(SNPs) --------G-------------------------------------------V--Q----------------------I----K--S--------------------R------------------------------------N--------------------------------------V-----------------D---------------------------------------------------------------------------------------------------------T----------------Q---------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------D_2_HYDROXYACID_DH_1         ----------------------D_2_HYDROXYACID_DH_2   ------D_2_HYDROXYACID_D------------------------------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fss A   1 AKIVLVLYDAGKHAADEEKLYGCTENKLGIANWLKDQGHELITTSDEEGGNSVLDQHIPDADIIITTPFHPAYITKERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTTLDAQTRYAQGTKNILESFFTGKFDYRPQDIILLNGEY 353
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350

Chain B from PDB  Type:PROTEIN  Length:346
 aligned with FDH_CANBO | O13437 from UniProtKB/Swiss-Prot  Length:364

    Alignment length:353
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350   
            FDH_CANBO     1 MKIVLVLYDAGKHAADEEKLYGCTENKLGIANWLKDQGHELITTSDKEGETSELDKHIPDADIIITTPFHPAYITKERLDKAKNLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLLPFNPKELLYYDYQALPKEAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTTLDAQTRYAEGTKNILESFFTGKFDYRPQDIILLNGEY 353
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....-------.......hhhhhhhhhhh...eeeee.......hhhhhhhhhh.eeee........hhhhhhhh....eeee........hhhhhhhhh...eeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhh........eeeee..hhhhhhhhhhhhhhh..eeeee.....hhhhhhhhheee..hhhhhhhh..eeee....hhhhh...hhhhhhhh...eeeee..hhhhhhhhhhhhhhhhh.eeeeee...........hhhhhh.......eee...hhhhhhhhhhhhhhhhhhhhhhhhh.....hhh.eeee..ee Sec.struct. author
                 SAPs(SNPs) --------G-------------------------------------------V--Q----------------------I----K--S--------------------R------------------------------------N--------------------------------------V-----------------D---------------------------------------------------------------------------------------------------------T----------------Q---------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------D_2_HYDROXYACID_DH_1         ----------------------D_2_HYDROXYACID_DH_2   ------D_2_HYDROXYACID_D------------------------------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fss B   1 AKIVLVLYDAG-------KLYGCTENKLGIANWLKDQGHELITTSDEEGGNSVLDQHIPDADIIITTPFHPAYITKERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTTLDAQTRYAQGTKNILESFFTGKFDYRPQDIILLNGEY 353
                                    10|       20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350   
                                     11      19

Chain C from PDB  Type:PROTEIN  Length:353
 aligned with FDH_CANBO | O13437 from UniProtKB/Swiss-Prot  Length:364

    Alignment length:353
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350   
            FDH_CANBO     1 MKIVLVLYDAGKHAADEEKLYGCTENKLGIANWLKDQGHELITTSDKEGETSELDKHIPDADIIITTPFHPAYITKERLDKAKNLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLLPFNPKELLYYDYQALPKEAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTTLDAQTRYAEGTKNILESFFTGKFDYRPQDIILLNGEY 353
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee....hhhhhhh........hhhhhhhhhhh...eeeee.......hhhhhhhhhh.eeee........hhhhhhhh....eeee........hhhhhhhhh...eeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhh........eeeee..hhhhhhhhhhhhhhh..eeeee.....hhhhhhhh.eee..hhhhhhhhh.eeee............hhhhhh.....eeeee..hhhhhhhhhhhhhhhh..eeeeee...........hhhhhh.......eee...hhhhhhhhhhhhhhhhhhhhhhhhh.....hhh.eee..... Sec.struct. author
                 SAPs(SNPs) --------G-------------------------------------------V--Q----------------------I----K--S--------------------R------------------------------------N--------------------------------------V-----------------D---------------------------------------------------------------------------------------------------------T----------------Q---------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------D_2_HYDROXYACID_DH_1         ----------------------D_2_HYDROXYACID_DH_2   ------D_2_HYDROXYACID_D------------------------------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fss C   1 AKIVLVLYDAGKHAADEEKLYGCTENKLGIANWLKDQGHELITTSDEEGGNSVLDQHIPDADIIITTPFHPAYITKERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTTLDAQTRYAQGTKNILESFFTGKFDYRPQDIILLNGEY 353
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350

Chain D from PDB  Type:PROTEIN  Length:337
 aligned with FDH_CANBO | O13437 from UniProtKB/Swiss-Prot  Length:364

    Alignment length:353
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350   
            FDH_CANBO     1 MKIVLVLYDAGKHAADEEKLYGCTENKLGIANWLKDQGHELITTSDKEGETSELDKHIPDADIIITTPFHPAYITKERLDKAKNLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLLPFNPKELLYYDYQALPKEAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTTLDAQTRYAEGTKNILESFFTGKFDYRPQDIILLNGEY 353
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..---------........hhhhhhhhhhh...eeeee.-------hhhhhhhhh.eeee........hhhhhhhh....eeee........hhhhhhhhh...eeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhh........eeeee..hhhhhhhhhhhhhhh..eeeee.....hhhhhhhhheee..hhhhhhhh..eeee............hhhhhh.....eeeee..hhhhhhhhhhhhhhhh..eeeeee...........hhhhhh.......eee...hhhhhhhhhhhhhhhhhhhhhhhhh.....hhh.eee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------V--Q----------------------I----K--S--------------------R------------------------------------N--------------------------------------V-----------------D---------------------------------------------------------------------------------------------------------T----------------Q---------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------D_2_HYDROXYACID_DH_1         ----------------------D_2_HYDROXYACID_DH_2   ------D_2_HYDROXYACID_D------------------------------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fss D   1 AKIVLVLY---------EKLYGCTENKLGIANWLKDQGHELITTS-------VLDQHIPDADIIITTPFHPAYITKERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTTLDAQTRYAQGTKNILESFFTGKFDYRPQDIILLNGEY 353
                                   | -       |20        30        40    |    -  |     60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350   
                                   8        18                         45      53

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2FSS)

(no "CATH Domain" information available for 2FSS)

(no "Pfam Domain" information available for 2FSS)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (FDH_CANBO | O13437)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0051287	NAD binding	Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
	GO:0070403	NAD+ binding	Interacting selectively and non-covalently with the oxidized form, NAD, of nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions.
	GO:0008863	formate dehydrogenase (NAD+) activity	Catalysis of the reaction: formate + NAD(+) = CO(2) + NADH.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
	GO:0042803	protein homodimerization activity	Interacting selectively and non-covalently with an identical protein to form a homodimer.
biological process
	GO:0006734	NADH metabolic process	The chemical reactions and pathways involving reduced nicotinamide adenine dinucleotide (NADH), a coenzyme present in most living cells and derived from the B vitamin nicotinic acid.
	GO:0006735	NADH regeneration	A metabolic process that generates a pool of NADH by the reduction of NAD+.
	GO:0042426	choline catabolic process	The chemical reactions and pathways resulting in the breakdown of choline (2-hydroxyethyltrimethylammonium), an amino alcohol that occurs widely in living organisms as a constituent of certain types of phospholipids and in the neurotransmitter acetylcholine.
	GO:0042183	formate catabolic process	The chemical reactions and pathways resulting in the breakdown of formate, also known as methanoate, the anion HCOO- derived from methanoic (formic) acid.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0015946	methanol oxidation	The chemical reactions and pathways resulting in the conversion of methanol to methyl-Coenzyme M.
	GO:0030416	methylamine metabolic process	The chemical reactions and pathways involving methylamine (CH3NH2).
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

Asymmetric Unit
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	Cis Peptide Bonds
		Gln A:287 - Pro A:288	[ RasMol ]
		Gln B:287 - Pro B:288	[ RasMol ]
		Gln C:287 - Pro C:288	[ RasMol ]
		Gln D:287 - Pro D:288	[ RasMol ]
		Glu A:48 - Gly A:49	[ RasMol ]
		Glu B:48 - Gly B:49	[ RasMol ]
		Glu C:48 - Gly C:49	[ RasMol ]
		Gly B:49 - Gly B:50	[ RasMol ]
		Gly B:50 - Asn B:51	[ RasMol ]
		Phe A:285 - Pro A:286	[ RasMol ]
		Phe B:285 - Pro B:286	[ RasMol ]
		Phe C:285 - Pro C:286	[ RasMol ]
		Phe D:285 - Pro D:286	[ RasMol ]
		Pro C:71 - Ala C:72	[ RasMol ]

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	2fss
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	FDH_CANBO \| O13437
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	1.2.1.2
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	FDH_CANBO \| O13437
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	FDH_CANBO \| O13437	:	2j6i

2a1z	CBFDH K328V MUTANT

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 5)

Sites (5, 5)

SS Bonds (0, 0)

Cis Peptide Bonds (14, 14)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (12, 47)

PROSITE Motifs (3, 12)

Exons (0, 0)

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