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(-) Description

Title :  STRUCTURE OF THE YICI THIOSUGAR MICHAELIS COMPLEX
 
Authors :  Y. -W. Kim, A. L. Lovering, N. C. J. Strynadka, S. G. Withers
Date :  16 Nov 05  (Deposition) - 28 Feb 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Beta8Alpha8 Barrel, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. -W. Kim, A. L. Lovering, H. Chen, T. Kantner, L. P. Mcintosh, N. C. J. Strynadka, S. G. Withers
Expanding The Thioglycoligase Strategy To The Synthesis Of Alpha-Linked Thioglycosides Allows Structural Investigation Of The Parent Enzyme/Substrate Complex
J. Am. Chem. Soc. V. 128 2202 2006
PubMed-ID: 16478160  |  Reference-DOI: 10.1021/JA057904A

(-) Compounds

Molecule 1 - PUTATIVE FAMILY 31 GLUCOSIDASE YICI
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET29
    Expression System Strain: BL21 DE3
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: YICI
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 35)

Asymmetric/Biological Unit (4, 35)
No.NameCountTypeFull Name
1GOL14Ligand/IonGLYCEROL
2MPO5Ligand/Ion3[N-MORPHOLINO]PROPANE SULFONIC ACID
3SO49Ligand/IonSULFATE ION
4XTG7Ligand/Ion4-NITROPHENYL 6-THIO-6-S-ALPHA-D-XYLOPYRANOSYL-BETA-D-GLUCOPYRANOSIDE

(-) Sites  (35, 35)

Asymmetric Unit (35, 35)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR F:246 , ARG F:583 , HOH F:3246BINDING SITE FOR RESIDUE SO4 F 3001
02AC2SOFTWARETHR D:246 , ARG D:583 , HOH D:3087BINDING SITE FOR RESIDUE SO4 D 3002
03AC3SOFTWARELYS A:403 , ARG F:677 , TYR F:680 , VAL F:681 , HOH F:3093 , HOH F:3277 , HOH F:3315BINDING SITE FOR RESIDUE SO4 F 3003
04AC4SOFTWARETHR E:246 , ARG E:583 , HOH E:3065BINDING SITE FOR RESIDUE SO4 E 3004
05AC5SOFTWARETHR C:246 , LYS C:248 , ARG C:583 , HOH C:3228BINDING SITE FOR RESIDUE SO4 C 3005
06AC6SOFTWARETHR B:246 , ARG B:583BINDING SITE FOR RESIDUE SO4 B 3006
07AC7SOFTWAREARG F:333 , ARG F:334BINDING SITE FOR RESIDUE SO4 F 3007
08AC8SOFTWARETHR A:246 , LYS A:248 , ARG A:583 , HOH A:3191BINDING SITE FOR RESIDUE SO4 A 3008
09AC9SOFTWAREGLU E:24 , VAL E:25 , ASN E:96 , LYS E:114BINDING SITE FOR RESIDUE SO4 E 3009
10BC1SOFTWAREHIS B:640 , ASP B:642 , GLN B:653 , HIS B:654 , GLY B:655 , SER B:658 , HOH B:3282BINDING SITE FOR RESIDUE MPO B 3010
11BC2SOFTWAREHIS C:640 , ASP C:642 , GLN C:653 , HIS C:654 , GLY C:655 , SER C:658 , HOH C:3347BINDING SITE FOR RESIDUE MPO C 3011
12BC3SOFTWAREHIS D:640 , ASP D:642 , GLN D:652 , GLN D:653 , HIS D:654 , GLY D:655 , SER D:658 , HOH D:3325BINDING SITE FOR RESIDUE MPO D 3012
13BC4SOFTWAREHOH D:3303 , HIS E:640 , GLN E:652 , GLN E:653 , HIS E:654 , GLY E:655 , SER E:658BINDING SITE FOR RESIDUE MPO E 3013
14BC5SOFTWAREHIS F:640 , GLN F:653 , HIS F:654 , GLY F:655 , SER F:658 , HOH F:3153BINDING SITE FOR RESIDUE MPO F 3014
15BC6SOFTWAREASP A:185 , PHE A:277 , THR A:278 , ASP A:306 , CYS A:307 , TRP A:380 , LYS A:414 , ASP A:416 , ARG A:466 , TRP A:479 , ASP A:482 , PHE A:515 , HIS A:540 , SER A:542 , HOH A:3030 , HOH A:3033 , HOH A:3118 , HOH A:3157 , THR B:45 , LEU B:48 , ASP B:49BINDING SITE FOR RESIDUE XTG A 3015
16BC7SOFTWAREASP B:185 , ASP B:306 , TRP B:380 , LYS B:414 , ASP B:416 , ARG B:466 , TRP B:479 , ASP B:482 , PHE B:515 , HIS B:540 , SER B:542 , HOH B:3035 , HOH B:3068 , TRP C:8 , LEU F:48 , ASP F:49 , HOH F:3224BINDING SITE FOR RESIDUE XTG B 3016
17BC8SOFTWAREASP C:185 , PHE C:277 , THR C:278 , ASP C:306 , CYS C:307 , TRP C:380 , LYS C:414 , ASP C:416 , PHE C:417 , ARG C:466 , TRP C:479 , ASP C:482 , PHE C:515 , HIS C:540 , SER C:542 , LYS C:543 , HOH C:3049 , HOH C:3085 , HOH C:3189 , HOH C:3273 , THR D:45 , ASP D:49BINDING SITE FOR RESIDUE XTG C 3017
18BC9SOFTWAREASP D:185 , ASP D:306 , LYS D:414 , ASP D:416 , ARG D:420 , ARG D:466 , TRP D:479 , ASP D:482 , PHE D:515 , ARG D:538 , HIS D:540 , LYS D:543 , HOH D:3167 , HOH D:3284 , THR E:45 , ASP E:49 , HOH E:3117BINDING SITE FOR RESIDUE XTG D 3018
19CC1SOFTWAREASP C:49 , ASP E:185 , PHE E:277 , THR E:278 , ASP E:306 , TRP E:380 , ASP E:416 , PHE E:417 , ARG E:466 , TRP E:479 , ASP E:482 , PHE E:515 , HIS E:540 , SER E:542 , LYS E:543 , HOH E:3120 , HOH E:3153 , HOH E:3273 , TRP F:8BINDING SITE FOR RESIDUE XTG E 3019
20CC2SOFTWARELEU A:48 , ASP A:49 , ASP F:185 , PHE F:277 , ASP F:306 , TRP F:380 , LYS F:414 , ASP F:416 , ARG F:466 , TRP F:479 , ASP F:482 , PHE F:515 , HIS F:540 , LYS F:543 , HOH F:3038 , HOH F:3052 , HOH F:3149 , HOH F:3234BINDING SITE FOR RESIDUE XTG F 3020
21CC3SOFTWAREGLU A:329 , TRP F:267 , HIS F:301 , LYS F:336 , ALA F:337 , GLY F:339 , LEU F:340 , ARG F:677 , PRO F:678 , ASP F:679 , HOH F:3047 , HOH F:3062BINDING SITE FOR RESIDUE XTG F 3021
22CC4SOFTWARETHR A:455 , VAL A:456 , PRO F:265 , ALA F:266 , TRP F:267 , GLU F:460 , TYR F:574 , ASP F:679 , HOH F:3273 , HOH F:3274BINDING SITE FOR RESIDUE GOL F 3022
23CC5SOFTWAREARG C:68 , ASN C:211 , GLU C:238 , GOL C:3030 , HOH C:3081 , HOH C:3218 , HOH C:3365BINDING SITE FOR RESIDUE GOL C 3023
24CC6SOFTWAREGLN A:27 , ASP A:29 , VAL A:92 , THR A:93 , ILE A:94 , HOH A:3308BINDING SITE FOR RESIDUE GOL A 3024
25CC7SOFTWAREGLU B:31 , PHE B:58 , ARG B:68 , GLU B:238 , GOL B:3026BINDING SITE FOR RESIDUE GOL B 3025
26CC8SOFTWAREARG B:68 , HIS B:81 , ASN B:211 , GLU B:238 , GOL B:3025 , HOH B:3238 , HOH B:3285BINDING SITE FOR RESIDUE GOL B 3026
27CC9SOFTWARETRP B:8 , ASP C:482 , TYR C:484 , PHE C:515 , HOH C:3266BINDING SITE FOR RESIDUE GOL C 3027
28DC1SOFTWAREGLU A:31 , PHE A:58 , ARG A:68 , GLU A:238 , GOL A:3029 , HOH A:3342BINDING SITE FOR RESIDUE GOL A 3028
29DC2SOFTWAREARG A:68 , HIS A:81 , ASN A:211 , GLU A:238 , GOL A:3028 , HOH A:3127 , HOH A:3137 , HOH A:3333BINDING SITE FOR RESIDUE GOL A 3029
30DC3SOFTWAREGLU C:31 , PHE C:58 , ARG C:68 , GLU C:238 , GOL C:3023 , HOH C:3365BINDING SITE FOR RESIDUE GOL C 3030
31DC4SOFTWAREGLU D:31 , PHE D:58 , ARG D:68 , GLU D:238 , HOH D:3318 , HOH D:3322BINDING SITE FOR RESIDUE GOL D 3031
32DC5SOFTWAREARG D:68 , HIS D:81 , LEU D:84 , ASN D:211 , GLU D:238 , HOH D:3098 , HOH D:3145 , HOH D:3209BINDING SITE FOR RESIDUE GOL D 3032
33DC6SOFTWAREGLU E:31 , PHE E:58 , ARG E:68 , GLU E:238 , HOH E:3191BINDING SITE FOR RESIDUE GOL E 3033
34DC7SOFTWAREGLU F:31 , PHE F:58 , ARG F:68 , GLU F:238BINDING SITE FOR RESIDUE GOL F 3034
35DC8SOFTWAREASP E:482 , TYR E:484 , PHE E:515 , GLU E:516 , TRP F:8BINDING SITE FOR RESIDUE GOL E 3035

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2F2H)

(-) Cis Peptide Bonds  (20, 20)

Asymmetric/Biological Unit
No.Residues
1Gly A:79 -Pro A:80
2Gly A:244 -Pro A:245
3Trp A:315 -Cys A:316
4Pro A:476 -Val A:477
5Gly B:79 -Pro B:80
6Gly B:244 -Pro B:245
7Trp B:315 -Cys B:316
8Pro B:476 -Val B:477
9Gly C:79 -Pro C:80
10Gly C:244 -Pro C:245
11Trp C:315 -Cys C:316
12Pro C:476 -Val C:477
13Gly D:79 -Pro D:80
14Gly D:244 -Pro D:245
15Trp D:315 -Cys D:316
16Pro D:476 -Val D:477
17Gly E:79 -Pro E:80
18Gly E:244 -Pro E:245
19Gly F:79 -Pro F:80
20Gly F:244 -Pro F:245

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2F2H)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2F2H)

(-) Exons   (0, 0)

(no "Exon" information available for 2F2H)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:773
 aligned with XYLS_ECOLI | P31434 from UniProtKB/Swiss-Prot  Length:772

    Alignment length:773
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             772 
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770 | 
           XYLS_ECOLI     1 MKISDGNWLIQPGLNLIHPLQVFEVEQQDNEMVVYAAPRDVRERTWQLDTPLFTLRFFSPQEGIVGVRIEHFQGALNNGPHYPLNILQDVKVTIENTERYAEFKSGNLSARVSKGEFWSLDFLRNGERITGSQVKNNGYVQDTNNQRNYMFERLDLGVGETVYGLGERFTALVRNGQTVETWNRDGGTSTEQAYKNIPFYMTNRGYGVLVNHPQCVSFEVGSEKVSKVQFSVESEYLEYFVIDGPTPKAVLDRYTRFTGRPALPPAWSFGLWLTTSFTTNYDEATVNSFIDGMAERNLPLHVFHFDCFWMKAFQWCDFEWDPLTFPDPEGMIRRLKAKGLKICVWINPYIGQKSPVFKELQEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPDACKWYADKLKGLVAMGVDCFKTDFGERIPTDVQWFDGSDPQKMHNHYAYIYNELVWNVLKDTVGEEEAVLFARSASVGAQKFPVHWGGDCYANYESMAESLRGGLSIGLSGFGFWSHDIGGFENTAPAHVYKRWCAFGLLSSHSRLHGSKSYRVPWAYDDESCDVVRFFTQLKCRMMPYLYREAARANARGTPMMRAMMMEFPDDPACDYLDRQYMLGDNVMVAPVFTEAGDVQFYLPEGRWTHLWHNDELDGSRWHKQQHGFLSLPVYVRDNTLLALGNNDQRPDYVWHEGTAFHLFNLQDGHEAVCEVPAADGSVIFTLKAARTGNTITVTGAGEAKNWTLCLRNVVKVNGLQDGSQAESEQGLVVKPQGNALTITL-   -
               SCOP domains d2f2ha2 A:1-247 Putative glucosidase YicI, N-terminal domain                                                                                                                                                                                           d2f2ha4 A:248-585 Putative glucosidase YicI, domain 2                                                                                                                                                                                                                                                                                             d2f2ha3 A:586-665 Putative glucosidase YicI, domain 3                           d2f2ha1 A:666-773 Putative glucosidase YicI, C-terminal domain                                               SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee...ee...eeee...eeeeeeee..eeeeeee.....hhhhh.....eeeeee.....eeeeeee.....................eeeee...eeeeee..eeeeee.....eeeeee..eeeeeee...eeeeee....eeeeeeeee......eeeeee.........eeee..............eeeeeeee...eeeee......eeee......eeeeeee..eeeeeeee..hhhhhhhhhhhhhh.....hhhhh.eeee.......hhhhhhhhhhhhhhh.....eeeehhhhh................hhhhhhhhhhhh..eeeeee..ee.....hhhhhhhhh....................ee....hhhhhhhhhhhhhhhhhh...eeee................hhhhhhhhhhhhhhhhhhhhhhh..hhhhh.eee.....hhhhh..ee......hhhhhhhhhhhhhhhhh.....eeee........hhhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eehhhhhh..hhhhh.....eee...eee........eeeeee...eeee.....eee..eeeeee.......eee...eeeee...............eeeee......eeeeeee.....eeeeeeeeee..eeeeeeee.....eeee.......ee..eeee......eeee......ee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2f2h A   1 MKISDGNWLIQPGLNLIHPLQVFEVEQQDNEMVVYAAPRDVRERTWQLDTPLFTLRFFSPQEGIVGVRIEHFQGALNNGPHYPLNILQDVKVTIENTERYAEFKSGNLSARVSKGEFWSLDFLRNGERITGSQVKNNGYVQDTNNQRNYMFERLDLGVGETVYGLGERFTALVRNGQTVETWNRDGGTSTEQAYKNIPFYMTNRGYGVLVNHPQCVSFEVGSEKVSKVQFSVESEYLEYFVIDGPTPKAVLDRYTRFTGRPALPPAWSFGLWLTTSFTTNYDEATVNSFIDGMAERNLPLHVFHFDCFWMKAFQWCDFEWDPLTFPDPEGMIRRLKAKGLKICVWINPYIGQKSPVFKELQEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPDACKWYADKLKGLVAMGVDCFKTDFGERIPTDVQWFDGSDPQKMHNHYAYIYNELVWNVLKDTVGEEEAVLFARSASVGAQKFPVHWGGDCYANYESMAESLRGGLSIGLSGFGFWSHDIGGFENTAPAHVYKRWCAFGLLSSHSRLHGSKSYRVPWAYDDESCDVVRFFTQLKCRMMPYLYREAARANARGTPMMRAMMMEFPDDPACDYLDRQYMLGDNVMVAPVFTEAGDVQFYLPEGRWTHLWHNDELDGSRWHKQQHGFLSLPVYVRDNTLLALGNNDQRPDYVWHEGTAFHLFNLQDGHEAVCEVPAADGSVIFTLKAARTGNTITVTGAGEAKNWTLCLRNVVKVNGLQDGSQAESEQGLVVKPQGNALTITLH 773
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770   


Chain B from PDB  Type:PROTEIN  Length:773
 aligned with XYLS_ECOLI | P31434 from UniProtKB/Swiss-Prot  Length:772

    Alignment length:773
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             772 
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770 | 
           XYLS_ECOLI     1 MKISDGNWLIQPGLNLIHPLQVFEVEQQDNEMVVYAAPRDVRERTWQLDTPLFTLRFFSPQEGIVGVRIEHFQGALNNGPHYPLNILQDVKVTIENTERYAEFKSGNLSARVSKGEFWSLDFLRNGERITGSQVKNNGYVQDTNNQRNYMFERLDLGVGETVYGLGERFTALVRNGQTVETWNRDGGTSTEQAYKNIPFYMTNRGYGVLVNHPQCVSFEVGSEKVSKVQFSVESEYLEYFVIDGPTPKAVLDRYTRFTGRPALPPAWSFGLWLTTSFTTNYDEATVNSFIDGMAERNLPLHVFHFDCFWMKAFQWCDFEWDPLTFPDPEGMIRRLKAKGLKICVWINPYIGQKSPVFKELQEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPDACKWYADKLKGLVAMGVDCFKTDFGERIPTDVQWFDGSDPQKMHNHYAYIYNELVWNVLKDTVGEEEAVLFARSASVGAQKFPVHWGGDCYANYESMAESLRGGLSIGLSGFGFWSHDIGGFENTAPAHVYKRWCAFGLLSSHSRLHGSKSYRVPWAYDDESCDVVRFFTQLKCRMMPYLYREAARANARGTPMMRAMMMEFPDDPACDYLDRQYMLGDNVMVAPVFTEAGDVQFYLPEGRWTHLWHNDELDGSRWHKQQHGFLSLPVYVRDNTLLALGNNDQRPDYVWHEGTAFHLFNLQDGHEAVCEVPAADGSVIFTLKAARTGNTITVTGAGEAKNWTLCLRNVVKVNGLQDGSQAESEQGLVVKPQGNALTITL-   -
               SCOP domains d2f2hb2 B:1-247 Putative glucosidase YicI, N-terminal domain                                                                                                                                                                                           d2f2hb4 B:248-585 Putative glucosidase YicI, domain 2                                                                                                                                                                                                                                                                                             d2f2hb3 B:586-665 Putative glucosidase YicI, domain 3                           d2f2hb1 B:666-773 Putative glucosidase YicI, C-terminal domain                                               SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee...ee...eeee...eeeeeeee..eeeeeee.....hhhhh.....eeeeee.....eeeeeee.....................eeeee...eeeeee..eeeeee.....eeeeee..eeeeeee....eeeee....eeeeeeeee......eeeeee.........eeee..............eeeeeeee...eeeee......eeee......eeeeee...eeeeeeee..hhhhhhhhhhhhhh.....hhhhh.eeee.......hhhhhhhhhhhhhhh.....eeeehhhhh................hhhhhhhhhhh...eeeeee..ee...hhhhhhhhhhh....................ee....hhhhhhhhhhhhhhhhhh...eeee................hhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.eee.....hhhhh..ee......hhhhhhhhhhhhhhhhh.....eeee........hhhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eehhhhhh..hhhhh.....eee...eee........eeeeee...eeee.....eee..eeeeee.......eee...eeeee...............eeeee......eeeeeee.....eeeeeeeeee..eeeeeeee.....eeeee......eee.eeee....eeeeee.....eee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2f2h B   1 MKISDGNWLIQPGLNLIHPLQVFEVEQQDNEMVVYAAPRDVRERTWQLDTPLFTLRFFSPQEGIVGVRIEHFQGALNNGPHYPLNILQDVKVTIENTERYAEFKSGNLSARVSKGEFWSLDFLRNGERITGSQVKNNGYVQDTNNQRNYMFERLDLGVGETVYGLGERFTALVRNGQTVETWNRDGGTSTEQAYKNIPFYMTNRGYGVLVNHPQCVSFEVGSEKVSKVQFSVESEYLEYFVIDGPTPKAVLDRYTRFTGRPALPPAWSFGLWLTTSFTTNYDEATVNSFIDGMAERNLPLHVFHFDCFWMKAFQWCDFEWDPLTFPDPEGMIRRLKAKGLKICVWINPYIGQKSPVFKELQEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPDACKWYADKLKGLVAMGVDCFKTDFGERIPTDVQWFDGSDPQKMHNHYAYIYNELVWNVLKDTVGEEEAVLFARSASVGAQKFPVHWGGDCYANYESMAESLRGGLSIGLSGFGFWSHDIGGFENTAPAHVYKRWCAFGLLSSHSRLHGSKSYRVPWAYDDESCDVVRFFTQLKCRMMPYLYREAARANARGTPMMRAMMMEFPDDPACDYLDRQYMLGDNVMVAPVFTEAGDVQFYLPEGRWTHLWHNDELDGSRWHKQQHGFLSLPVYVRDNTLLALGNNDQRPDYVWHEGTAFHLFNLQDGHEAVCEVPAADGSVIFTLKAARTGNTITVTGAGEAKNWTLCLRNVVKVNGLQDGSQAESEQGLVVKPQGNALTITLH 773
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770   


Chain C from PDB  Type:PROTEIN  Length:773
 aligned with XYLS_ECOLI | P31434 from UniProtKB/Swiss-Prot  Length:772

    Alignment length:773
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             772 
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770 | 
           XYLS_ECOLI     1 MKISDGNWLIQPGLNLIHPLQVFEVEQQDNEMVVYAAPRDVRERTWQLDTPLFTLRFFSPQEGIVGVRIEHFQGALNNGPHYPLNILQDVKVTIENTERYAEFKSGNLSARVSKGEFWSLDFLRNGERITGSQVKNNGYVQDTNNQRNYMFERLDLGVGETVYGLGERFTALVRNGQTVETWNRDGGTSTEQAYKNIPFYMTNRGYGVLVNHPQCVSFEVGSEKVSKVQFSVESEYLEYFVIDGPTPKAVLDRYTRFTGRPALPPAWSFGLWLTTSFTTNYDEATVNSFIDGMAERNLPLHVFHFDCFWMKAFQWCDFEWDPLTFPDPEGMIRRLKAKGLKICVWINPYIGQKSPVFKELQEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPDACKWYADKLKGLVAMGVDCFKTDFGERIPTDVQWFDGSDPQKMHNHYAYIYNELVWNVLKDTVGEEEAVLFARSASVGAQKFPVHWGGDCYANYESMAESLRGGLSIGLSGFGFWSHDIGGFENTAPAHVYKRWCAFGLLSSHSRLHGSKSYRVPWAYDDESCDVVRFFTQLKCRMMPYLYREAARANARGTPMMRAMMMEFPDDPACDYLDRQYMLGDNVMVAPVFTEAGDVQFYLPEGRWTHLWHNDELDGSRWHKQQHGFLSLPVYVRDNTLLALGNNDQRPDYVWHEGTAFHLFNLQDGHEAVCEVPAADGSVIFTLKAARTGNTITVTGAGEAKNWTLCLRNVVKVNGLQDGSQAESEQGLVVKPQGNALTITL-   -
               SCOP domains d2f2hc2 C:1-247 Putative glucosidase YicI, N-terminal domain                                                                                                                                                                                           d2f2hc4 C:248-585 Putative glucosidase YicI, domain 2                                                                                                                                                                                                                                                                                             d2f2hc3 C:586-665 Putative glucosidase YicI, domain 3                           d2f2hc1 C:666-773 Putative glucosidase YicI, C-terminal domain                                               SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee...ee...eeee...eeeeeeee..eeeeeee.....hhhhh.....eeeeeeeee..eeeeeee.....................eeeee...eeeeee..eeeeee.....eeeeee..eeeeeee...eeeeee....eeeeeeeee......eeeeee.........eeee..............eeeeeeee...eeeee......eeee......eeeeee...eeeeeeee..hhhhhhhhhhhhhh.....hhhhh.eeee.......hhhhhhhhhhhhhhh.....eeeehhhhh................hhhhhhhhhhhh..eeeeee..ee...hhhhhhhhhhh....................ee....hhhhhhhhhhhhhhhhhh...eeee................hhhhhhhhhhhhhhhhhhhhhhh..hhhhh.eee.....hhhhh..ee......hhhhhhhhhhhhhhhhh.....eeee........hhhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eehhhhhh..hhhhh.....eee...eee........eeeeee...eeee.....eee..eeeeee.......eee...eeeee...............eeeee......eeeeeee.....eeeeeeeeee..eeeeeeee.....eeeee......eee.eeee....eeeeee.....eee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2f2h C   1 MKISDGNWLIQPGLNLIHPLQVFEVEQQDNEMVVYAAPRDVRERTWQLDTPLFTLRFFSPQEGIVGVRIEHFQGALNNGPHYPLNILQDVKVTIENTERYAEFKSGNLSARVSKGEFWSLDFLRNGERITGSQVKNNGYVQDTNNQRNYMFERLDLGVGETVYGLGERFTALVRNGQTVETWNRDGGTSTEQAYKNIPFYMTNRGYGVLVNHPQCVSFEVGSEKVSKVQFSVESEYLEYFVIDGPTPKAVLDRYTRFTGRPALPPAWSFGLWLTTSFTTNYDEATVNSFIDGMAERNLPLHVFHFDCFWMKAFQWCDFEWDPLTFPDPEGMIRRLKAKGLKICVWINPYIGQKSPVFKELQEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPDACKWYADKLKGLVAMGVDCFKTDFGERIPTDVQWFDGSDPQKMHNHYAYIYNELVWNVLKDTVGEEEAVLFARSASVGAQKFPVHWGGDCYANYESMAESLRGGLSIGLSGFGFWSHDIGGFENTAPAHVYKRWCAFGLLSSHSRLHGSKSYRVPWAYDDESCDVVRFFTQLKCRMMPYLYREAARANARGTPMMRAMMMEFPDDPACDYLDRQYMLGDNVMVAPVFTEAGDVQFYLPEGRWTHLWHNDELDGSRWHKQQHGFLSLPVYVRDNTLLALGNNDQRPDYVWHEGTAFHLFNLQDGHEAVCEVPAADGSVIFTLKAARTGNTITVTGAGEAKNWTLCLRNVVKVNGLQDGSQAESEQGLVVKPQGNALTITLH 773
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770   


Chain D from PDB  Type:PROTEIN  Length:773
 aligned with XYLS_ECOLI | P31434 from UniProtKB/Swiss-Prot  Length:772

    Alignment length:773
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             772 
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770 | 
           XYLS_ECOLI     1 MKISDGNWLIQPGLNLIHPLQVFEVEQQDNEMVVYAAPRDVRERTWQLDTPLFTLRFFSPQEGIVGVRIEHFQGALNNGPHYPLNILQDVKVTIENTERYAEFKSGNLSARVSKGEFWSLDFLRNGERITGSQVKNNGYVQDTNNQRNYMFERLDLGVGETVYGLGERFTALVRNGQTVETWNRDGGTSTEQAYKNIPFYMTNRGYGVLVNHPQCVSFEVGSEKVSKVQFSVESEYLEYFVIDGPTPKAVLDRYTRFTGRPALPPAWSFGLWLTTSFTTNYDEATVNSFIDGMAERNLPLHVFHFDCFWMKAFQWCDFEWDPLTFPDPEGMIRRLKAKGLKICVWINPYIGQKSPVFKELQEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPDACKWYADKLKGLVAMGVDCFKTDFGERIPTDVQWFDGSDPQKMHNHYAYIYNELVWNVLKDTVGEEEAVLFARSASVGAQKFPVHWGGDCYANYESMAESLRGGLSIGLSGFGFWSHDIGGFENTAPAHVYKRWCAFGLLSSHSRLHGSKSYRVPWAYDDESCDVVRFFTQLKCRMMPYLYREAARANARGTPMMRAMMMEFPDDPACDYLDRQYMLGDNVMVAPVFTEAGDVQFYLPEGRWTHLWHNDELDGSRWHKQQHGFLSLPVYVRDNTLLALGNNDQRPDYVWHEGTAFHLFNLQDGHEAVCEVPAADGSVIFTLKAARTGNTITVTGAGEAKNWTLCLRNVVKVNGLQDGSQAESEQGLVVKPQGNALTITL-   -
               SCOP domains d2f2hd2 D:1-247 Putative glucosidase YicI, N-terminal domain                                                                                                                                                                                           d2f2hd4 D:248-585 Putative glucosidase YicI, domain 2                                                                                                                                                                                                                                                                                             d2f2hd3 D:586-665 Putative glucosidase YicI, domain 3                           d2f2hd1 D:666-773 Putative glucosidase YicI, C-terminal domain                                               SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee...ee...eeee...eeeeeeee..eeeeeee.....hhhhh.....eeeeee.....eeeeeee.....................eeeee...eeeeee..eeeeee.....eeeeee..eeeeeee...eeeeee....eeeeeeeee......eeeeee.........eeee..............eeeeeeee...eeeee......eeee......eeeeee...eeeeeeee..hhhhhhhhhhhhhh.....hhhhh.eeee.......hhhhhhhhhhhhhhh.....eeeehhhhh................hhhhhhhhhhhh..eeeeee..ee...hhhhhhhhhhh....................ee....hhhhhhhhhhhhhhhhh....eeee................hhhhhhhhhhhhhhhhhhhhhhh..hhhhh.eee.....hhhhh..ee......hhhhhhhhhhhhhhhhh.....eeee........hhhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eehhhhhh..hhhhh.....eee...eee........eeeeee...eeee.....eee..eeeeee.......eee...eeeee...............eeeee.....eeeeeeee.....eeeeeeeeee..eeeeeeee.....eeeee....eeeee.eeee....eeeeee.....eeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2f2h D   1 MKISDGNWLIQPGLNLIHPLQVFEVEQQDNEMVVYAAPRDVRERTWQLDTPLFTLRFFSPQEGIVGVRIEHFQGALNNGPHYPLNILQDVKVTIENTERYAEFKSGNLSARVSKGEFWSLDFLRNGERITGSQVKNNGYVQDTNNQRNYMFERLDLGVGETVYGLGERFTALVRNGQTVETWNRDGGTSTEQAYKNIPFYMTNRGYGVLVNHPQCVSFEVGSEKVSKVQFSVESEYLEYFVIDGPTPKAVLDRYTRFTGRPALPPAWSFGLWLTTSFTTNYDEATVNSFIDGMAERNLPLHVFHFDCFWMKAFQWCDFEWDPLTFPDPEGMIRRLKAKGLKICVWINPYIGQKSPVFKELQEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPDACKWYADKLKGLVAMGVDCFKTDFGERIPTDVQWFDGSDPQKMHNHYAYIYNELVWNVLKDTVGEEEAVLFARSASVGAQKFPVHWGGDCYANYESMAESLRGGLSIGLSGFGFWSHDIGGFENTAPAHVYKRWCAFGLLSSHSRLHGSKSYRVPWAYDDESCDVVRFFTQLKCRMMPYLYREAARANARGTPMMRAMMMEFPDDPACDYLDRQYMLGDNVMVAPVFTEAGDVQFYLPEGRWTHLWHNDELDGSRWHKQQHGFLSLPVYVRDNTLLALGNNDQRPDYVWHEGTAFHLFNLQDGHEAVCEVPAADGSVIFTLKAARTGNTITVTGAGEAKNWTLCLRNVVKVNGLQDGSQAESEQGLVVKPQGNALTITLH 773
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770   


Chain E from PDB  Type:PROTEIN  Length:773
 aligned with XYLS_ECOLI | P31434 from UniProtKB/Swiss-Prot  Length:772

    Alignment length:773
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             772 
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770 | 
           XYLS_ECOLI     1 MKISDGNWLIQPGLNLIHPLQVFEVEQQDNEMVVYAAPRDVRERTWQLDTPLFTLRFFSPQEGIVGVRIEHFQGALNNGPHYPLNILQDVKVTIENTERYAEFKSGNLSARVSKGEFWSLDFLRNGERITGSQVKNNGYVQDTNNQRNYMFERLDLGVGETVYGLGERFTALVRNGQTVETWNRDGGTSTEQAYKNIPFYMTNRGYGVLVNHPQCVSFEVGSEKVSKVQFSVESEYLEYFVIDGPTPKAVLDRYTRFTGRPALPPAWSFGLWLTTSFTTNYDEATVNSFIDGMAERNLPLHVFHFDCFWMKAFQWCDFEWDPLTFPDPEGMIRRLKAKGLKICVWINPYIGQKSPVFKELQEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPDACKWYADKLKGLVAMGVDCFKTDFGERIPTDVQWFDGSDPQKMHNHYAYIYNELVWNVLKDTVGEEEAVLFARSASVGAQKFPVHWGGDCYANYESMAESLRGGLSIGLSGFGFWSHDIGGFENTAPAHVYKRWCAFGLLSSHSRLHGSKSYRVPWAYDDESCDVVRFFTQLKCRMMPYLYREAARANARGTPMMRAMMMEFPDDPACDYLDRQYMLGDNVMVAPVFTEAGDVQFYLPEGRWTHLWHNDELDGSRWHKQQHGFLSLPVYVRDNTLLALGNNDQRPDYVWHEGTAFHLFNLQDGHEAVCEVPAADGSVIFTLKAARTGNTITVTGAGEAKNWTLCLRNVVKVNGLQDGSQAESEQGLVVKPQGNALTITL-   -
               SCOP domains d2f2he2 E:1-247 Putative glucosidase YicI, N-terminal domain                                                                                                                                                                                           d2f2he4 E:248-585 Putative glucosidase YicI, domain 2                                                                                                                                                                                                                                                                                             d2f2he3 E:586-665 Putative glucosidase YicI, domain 3                           d2f2he1 E:666-773 Putative glucosidase YicI, C-terminal domain                                               SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee...ee...eeee...eeeeeeee..eeeeeee.....hhhhh.....eeeeee.....eeeeeee.....................eeeee...eeeeee..eeeeee.....eeeeee..eeeeeee...eeeeee....eeeeeeeee......eeeee..........eeee...............eeeeeee...eeeee......eeee......eeeeeee..eeeeeeee..hhhhhhhhhhhhhh.....hhhhh.eeee.......hhhhhhhhhhhhhhh.....eeeehhhhh................hhhhhhhhhhhh..eeeeee..ee....hhhhhhhhhh....................ee....hhhhhhhhhhhhhhhhhh...eeee................hhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.eee.....hhhhh..ee......hhhhhhhhhhhhhhhhh.....eeee........hhhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeehhhhh..hhhhh.....eee...eee........eeeeee...eeee.....eee..eeeeee.......eee...eeeee...............eeeee......eeeeeee.....eeeeeeeeee..eeeeeeee.....eeeee......eee.eeee....eeeeee.....eee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2f2h E   1 MKISDGNWLIQPGLNLIHPLQVFEVEQQDNEMVVYAAPRDVRERTWQLDTPLFTLRFFSPQEGIVGVRIEHFQGALNNGPHYPLNILQDVKVTIENTERYAEFKSGNLSARVSKGEFWSLDFLRNGERITGSQVKNNGYVQDTNNQRNYMFERLDLGVGETVYGLGERFTALVRNGQTVETWNRDGGTSTEQAYKNIPFYMTNRGYGVLVNHPQCVSFEVGSEKVSKVQFSVESEYLEYFVIDGPTPKAVLDRYTRFTGRPALPPAWSFGLWLTTSFTTNYDEATVNSFIDGMAERNLPLHVFHFDCFWMKAFQWCDFEWDPLTFPDPEGMIRRLKAKGLKICVWINPYIGQKSPVFKELQEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPDACKWYADKLKGLVAMGVDCFKTDFGERIPTDVQWFDGSDPQKMHNHYAYIYNELVWNVLKDTVGEEEAVLFARSASVGAQKFPVHWGGDCYANYESMAESLRGGLSIGLSGFGFWSHDIGGFENTAPAHVYKRWCAFGLLSSHSRLHGSKSYRVPWAYDDESCDVVRFFTQLKCRMMPYLYREAARANARGTPMMRAMMMEFPDDPACDYLDRQYMLGDNVMVAPVFTEAGDVQFYLPEGRWTHLWHNDELDGSRWHKQQHGFLSLPVYVRDNTLLALGNNDQRPDYVWHEGTAFHLFNLQDGHEAVCEVPAADGSVIFTLKAARTGNTITVTGAGEAKNWTLCLRNVVKVNGLQDGSQAESEQGLVVKPQGNALTITLH 773
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770   


Chain F from PDB  Type:PROTEIN  Length:773
 aligned with XYLS_ECOLI | P31434 from UniProtKB/Swiss-Prot  Length:772

    Alignment length:773
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             772 
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770 | 
           XYLS_ECOLI     1 MKISDGNWLIQPGLNLIHPLQVFEVEQQDNEMVVYAAPRDVRERTWQLDTPLFTLRFFSPQEGIVGVRIEHFQGALNNGPHYPLNILQDVKVTIENTERYAEFKSGNLSARVSKGEFWSLDFLRNGERITGSQVKNNGYVQDTNNQRNYMFERLDLGVGETVYGLGERFTALVRNGQTVETWNRDGGTSTEQAYKNIPFYMTNRGYGVLVNHPQCVSFEVGSEKVSKVQFSVESEYLEYFVIDGPTPKAVLDRYTRFTGRPALPPAWSFGLWLTTSFTTNYDEATVNSFIDGMAERNLPLHVFHFDCFWMKAFQWCDFEWDPLTFPDPEGMIRRLKAKGLKICVWINPYIGQKSPVFKELQEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPDACKWYADKLKGLVAMGVDCFKTDFGERIPTDVQWFDGSDPQKMHNHYAYIYNELVWNVLKDTVGEEEAVLFARSASVGAQKFPVHWGGDCYANYESMAESLRGGLSIGLSGFGFWSHDIGGFENTAPAHVYKRWCAFGLLSSHSRLHGSKSYRVPWAYDDESCDVVRFFTQLKCRMMPYLYREAARANARGTPMMRAMMMEFPDDPACDYLDRQYMLGDNVMVAPVFTEAGDVQFYLPEGRWTHLWHNDELDGSRWHKQQHGFLSLPVYVRDNTLLALGNNDQRPDYVWHEGTAFHLFNLQDGHEAVCEVPAADGSVIFTLKAARTGNTITVTGAGEAKNWTLCLRNVVKVNGLQDGSQAESEQGLVVKPQGNALTITL-   -
               SCOP domains d2f2hf2 F:1-247 Putative glucosidase YicI, N-terminal domain                                                                                                                                                                                           d2f2hf4 F:248-585 Putative glucosidase YicI, domain 2                                                                                                                                                                                                                                                                                             d2f2hf3 F:586-665 Putative glucosidase YicI, domain 3                           d2f2hf1 F:666-773 Putative glucosidase YicI, C-terminal domain                                               SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee...ee...eeee...eeeeeeee..eeeeeee.....hhhhh.....eeeeeeeee..eeeeeee.....................eeeee...eeeeee..eeeeee.....eeeeee..eeeeeee...eeeeee....eeeeeeeee......eeeeee.........eeee..............eeeeeeee...eeeee......eeee......eeeeee...eeeeeeee..hhhhhhhhhhhhhh.....hhhhh.eeee.......hhhhhhhhhhhhhhh.....eeeehhhhh................hhhhhhhhhhh...eeeeee..ee...hhhhhhhhhhh....................ee....hhhhhhhhhhhhhhhhhh...eeee................hhhhhhhhhhhhhhhhhhhhhhh..hhhhh.eee.....hhhhh..ee......hhhhhhhhhhhhhhhhh.....eeeee.......hhhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eehhhhhh..hhhhh.....eee...eee........eeeeee...eeee.....eee..eeeeee.......eee...eeeee...............eeeee......eeeeeee.....eeeeeeeeee..eeeeeeee.....eeeee......eee.eeee....eeeeee.....eee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2f2h F   1 MKISDGNWLIQPGLNLIHPLQVFEVEQQDNEMVVYAAPRDVRERTWQLDTPLFTLRFFSPQEGIVGVRIEHFQGALNNGPHYPLNILQDVKVTIENTERYAEFKSGNLSARVSKGEFWSLDFLRNGERITGSQVKNNGYVQDTNNQRNYMFERLDLGVGETVYGLGERFTALVRNGQTVETWNRDGGTSTEQAYKNIPFYMTNRGYGVLVNHPQCVSFEVGSEKVSKVQFSVESEYLEYFVIDGPTPKAVLDRYTRFTGRPALPPAWSFGLWLTTSFTTNYDEATVNSFIDGMAERNLPLHVFHFDCFWMKAFQWCDFEWDPLTFPDPEGMIRRLKAKGLKICVWINPYIGQKSPVFKELQEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPDACKWYADKLKGLVAMGVDCFKTDFGERIPTDVQWFDGSDPQKMHNHYAYIYNELVWNVLKDTVGEEEAVLFARSASVGAQKFPVHWGGDCYANYESMAESLRGGLSIGLSGFGFWSHDIGGFENTAPAHVYKRWCAFGLLSSHSRLHGSKSYRVPWAYDDESCDVVRFFTQLKCRMMPYLYREAARANARGTPMMRAMMMEFPDDPACDYLDRQYMLGDNVMVAPVFTEAGDVQFYLPEGRWTHLWHNDELDGSRWHKQQHGFLSLPVYVRDNTLLALGNNDQRPDYVWHEGTAFHLFNLQDGHEAVCEVPAADGSVIFTLKAARTGNTITVTGAGEAKNWTLCLRNVVKVNGLQDGSQAESEQGLVVKPQGNALTITLH 773
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (4, 24)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2F2H)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2F2H)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (XYLS_ECOLI | P31434)
molecular function
    GO:0061634    alpha-D-xyloside xylohydrolase    Catalysis of the hydrolysis of terminal, non-reducing alpha-D-xylose residues with release of alpha-D-xylose.
    GO:0030246    carbohydrate binding    Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016798    hydrolase activity, acting on glycosyl bonds    Catalysis of the hydrolysis of any glycosyl bond.
    GO:0004553    hydrolase activity, hydrolyzing O-glycosyl compounds    Catalysis of the hydrolysis of any O-glycosyl bond.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0080176    xyloglucan 1,6-alpha-xylosidase activity    Catalysis of the hydrolysis of xyloglucan side chains so as to remove unsubstituted D-xylose residues attached to the glucose located at the non-reducing terminus.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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  Cis Peptide Bonds
    Gly A:244 - Pro A:245   [ RasMol ]  
    Gly A:79 - Pro A:80   [ RasMol ]  
    Gly B:244 - Pro B:245   [ RasMol ]  
    Gly B:79 - Pro B:80   [ RasMol ]  
    Gly C:244 - Pro C:245   [ RasMol ]  
    Gly C:79 - Pro C:80   [ RasMol ]  
    Gly D:244 - Pro D:245   [ RasMol ]  
    Gly D:79 - Pro D:80   [ RasMol ]  
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    Gly F:79 - Pro F:80   [ RasMol ]  
    Pro A:476 - Val A:477   [ RasMol ]  
    Pro B:476 - Val B:477   [ RasMol ]  
    Pro C:476 - Val C:477   [ RasMol ]  
    Pro D:476 - Val D:477   [ RasMol ]  
    Trp A:315 - Cys A:316   [ RasMol ]  
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  2f2h
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  XYLS_ECOLI | P31434
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 Related Entries

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UniProtKB/Swiss-Prot
        XYLS_ECOLI | P31434: 1we5 1xsi 1xsj 1xsk

(-) Related Entries Specified in the PDB File

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