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(-) Description

Title :  THE CRYSTAL STRUCTUTRE OF D-AMINO ACID AMIDASE FROM OCHROBACTRUM ANTHROPI SV3
 
Authors :  S. Okazaki, A. Suzuki, H. Komeda, Y. Asano, T. Yamane
Date :  15 Jun 06  (Deposition) - 04 Jul 06  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Keywords :  Penicillin Recognizing Protein, D-Stereospecific, Amidase, Hydrophobic, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Okazaki, A. Suzuki, H. Komeda, S. Yamaguchi, Y. Asano, T. Yamane
Crystal Structure And Functional Characterization Of A D-Stereospecific Amino Acid Amidase From Ochrobactrum Anthropi Sv3, A New Member Of The Penicillin-Recognizing Proteins
J. Mol. Biol. V. 368 79 2007
PubMed-ID: 17331533  |  Reference-DOI: 10.1016/J.JMB.2006.10.070
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - D-AMINO ACID AMIDASE
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PUC19
    Expression System Strain: JM109
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: OCHROBACTRUM ANTHROPI
    Organism Taxid: 529
    Strain: SV3
    Synonym: DAA

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): A     
Biological Unit 2 (1x):  B    
Biological Unit 3 (1x):   C   
Biological Unit 4 (1x):    D  
Biological Unit 5 (1x):     E 
Biological Unit 6 (1x):      F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 23)

Asymmetric Unit (1, 23)
No.NameCountTypeFull Name
1BA23Ligand/IonBARIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1BA-1Ligand/IonBARIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1BA-1Ligand/IonBARIUM ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1BA-1Ligand/IonBARIUM ION
Biological Unit 4 (0, 0)
No.NameCountTypeFull Name
1BA-1Ligand/IonBARIUM ION
Biological Unit 5 (0, 0)
No.NameCountTypeFull Name
1BA-1Ligand/IonBARIUM ION
Biological Unit 6 (0, 0)
No.NameCountTypeFull Name
1BA-1Ligand/IonBARIUM ION

(-) Sites  (22, 22)

Asymmetric Unit (22, 22)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER C:121 , ASP C:122 , GLU C:232 , TRP C:233 , HOH C:3289 , HOH C:3309 , HOH C:3310BINDING SITE FOR RESIDUE BA C 3001
02AC2SOFTWARESER B:121 , ASP B:122 , GLU B:232 , TRP B:233 , HOH B:3068BINDING SITE FOR RESIDUE BA B 3002
03AC3SOFTWARESER A:121 , ASP A:122 , GLU A:232 , TRP A:233 , HOH A:3230BINDING SITE FOR RESIDUE BA A 3003
04AC4SOFTWAREGLU A:211 , HOH A:3196 , HOH A:3204 , ASP D:53 , HOH D:3134 , HOH D:3371BINDING SITE FOR RESIDUE BA A 3004
05AC5SOFTWAREHOH B:3267 , ALA C:206 , HOH C:3155 , HOH C:3200BINDING SITE FOR RESIDUE BA C 3005
06AC6SOFTWAREALA F:17 , HOH F:3190BINDING SITE FOR RESIDUE BA F 3006
07AC7SOFTWAREHOH A:3280 , BA B:3010 , HOH F:3206BINDING SITE FOR RESIDUE BA F 3007
08AC8SOFTWAREHOH A:3280 , BA B:3010 , SER F:301 , GLU F:323 , HOH F:3126 , HOH F:3206BINDING SITE FOR RESIDUE BA F 3008
09AC9SOFTWARESER A:301 , GLU A:323 , HOH A:3378 , GLU B:323 , BA B:3010BINDING SITE FOR RESIDUE BA A 3009
10BC1SOFTWAREBA A:3009 , GLU B:323 , HOH B:3217 , BA F:3007 , BA F:3008 , HOH F:3206BINDING SITE FOR RESIDUE BA B 3010
11BC2SOFTWARESER C:301 , GLU C:323 , HOH C:3274 , HOH D:3207 , HOH D:3384BINDING SITE FOR RESIDUE BA C 3011
12BC3SOFTWAREHOH D:3207 , SER E:301 , GLU E:323 , HOH E:3220 , HOH E:3244BINDING SITE FOR RESIDUE BA E 3012
13BC4SOFTWAREHOH C:3392 , HOH D:3384 , HOH E:3220BINDING SITE FOR RESIDUE BA D 3013
14BC5SOFTWARESER D:301 , GLU D:323 , LYS D:359 , HOH D:3207 , HOH E:3247BINDING SITE FOR RESIDUE BA D 3014
15BC6SOFTWAREASN D:286BINDING SITE FOR RESIDUE BA D 3015
16BC7SOFTWARESER F:121 , ASP F:122 , GLU F:232 , TRP F:233 , HOH F:3235BINDING SITE FOR RESIDUE BA F 3016
17BC8SOFTWARESER D:121 , ASP D:122 , GLU D:232 , TRP D:233 , HOH D:3404BINDING SITE FOR RESIDUE BA D 3017
18BC9SOFTWAREASP E:122 , GLU E:232 , HOH E:3255BINDING SITE FOR RESIDUE BA E 3018
19CC1SOFTWAREASN E:360 , SER E:363BINDING SITE FOR RESIDUE BA E 3019
20CC2SOFTWAREASN A:360 , SER A:363BINDING SITE FOR RESIDUE BA A 3020
21CC3SOFTWAREASN D:360 , SER D:363 , SER E:363BINDING SITE FOR RESIDUE BA D 3022
22CC4SOFTWAREASP C:76BINDING SITE FOR RESIDUE BA F 3023

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2DRW)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Pro D:283 -Gly D:284
2Asn E:46 -Lys E:47
3Met F:204 -His F:205

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2DRW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2DRW)

(-) Exons   (0, 0)

(no "Exon" information available for 2DRW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:362
 aligned with Q9LCC8_OCHAN | Q9LCC8 from UniProtKB/TrEMBL  Length:363

    Alignment length:362
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361  
         Q9LCC8_OCHAN     2 SDLNNAIQGILDDHVARGVVGVSLALCLPGEETSLYQSGYADKFNKMPMTGDHLFRIASCTKSFIATGLHLLVQDGTVDLDEPITRWFPDLPKAAQMPVRILLNHRSGLPDFETSMPMISDKSWTAQEIVDFSFRHGVQKEPWHGMEYSNTGYVLAGMIIAHETGKPYSDHLRSRIFAPLGMKDTWVGTHETFPIEREARGYMHAAADDENPQWDVSGAGDPVDGVWDSTEWFPLSGANAAGDMVSTPRDIVKFLNALFDGRILDQKRLWEMKDNIKPAFFPGSNTVANGHGLLLMRYGSSELKGHLGQIPGHTSIMGRDEETGAALMLIQNSGAGDFESFYLKGVNEPVDRVLEAIKNSRS 363
               SCOP domains d2drwa1 A:2-363 D-Amino acid amidase DaaA                                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh....eeeeeee.....eeeeeeeeee....ee......ee...hhhhhhhhhhhhhhhh.......hhhhh.....hhhhhhhhhhh.....................hhhhhhhhhhhhh............hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh....ee......hhhhh...eee.....................eee.....hhhhhhhhh.eeehhhhhhhhhhhhhh....hhhhhhhhhh..ee.......eeee....eeeee..eeeeeeeeee..eeeeeee......eeeeee.ee.....hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2drw A   2 SDLNNAIQGILDDHVARGVVGVSLALCLPGEETSLYQSGYADKFNKMPMTGDHLFRIASCTKSFIATGLHLLVQDGTVDLDEPITRWFPDLPKAAQMPVRILLNHRSGLPDFETSMPMISDKSWTAQEIVDFSFRHGVQKEPWHGMEYSNTGYVLAGMIIAHETGKPYSDHLRSRIFAPLGMKDTWVGTHETFPIEREARGYMHAAADDENPQWDVSGAGDPVDGVWDSTEWFPLSGANAAGDMVSTPRDIVKFLNALFDGRILDQKRLWEMKDNIKPAFFPGSNTVANGHGLLLMRYGSSELKGHLGQIPGHTSIMGRDEETGAALMLIQNSGAGDFESFYLKGVNEPVDRVLEAIKNSRS 363
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361  


Chain B from PDB  Type:PROTEIN  Length:362
 aligned with Q9LCC8_OCHAN | Q9LCC8 from UniProtKB/TrEMBL  Length:363

    Alignment length:362
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361  
         Q9LCC8_OCHAN     2 SDLNNAIQGILDDHVARGVVGVSLALCLPGEETSLYQSGYADKFNKMPMTGDHLFRIASCTKSFIATGLHLLVQDGTVDLDEPITRWFPDLPKAAQMPVRILLNHRSGLPDFETSMPMISDKSWTAQEIVDFSFRHGVQKEPWHGMEYSNTGYVLAGMIIAHETGKPYSDHLRSRIFAPLGMKDTWVGTHETFPIEREARGYMHAAADDENPQWDVSGAGDPVDGVWDSTEWFPLSGANAAGDMVSTPRDIVKFLNALFDGRILDQKRLWEMKDNIKPAFFPGSNTVANGHGLLLMRYGSSELKGHLGQIPGHTSIMGRDEETGAALMLIQNSGAGDFESFYLKGVNEPVDRVLEAIKNSRS 363
               SCOP domains d2drwb_ B: D-Amino acid amidase DaaA                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhh...eeeeeee......eeeeeeeee....ee......ee...hhhhhhhhhhhhhhhh.......hhhhh.....hhhhhhhhhhh.....................hhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh....ee......hhhhh...eee.....................eee.....hhhhhhhhh.eeehhhhhhhhhhhhhh....hhhhhhhhhh..ee.......eeee....eeeee..eeeeeeeeee..eeeeeeee....eeeeeee.ee.....hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2drw B   2 SDLNNAIQGILDDHVARGVVGVSLALCLPGEETSLYQSGYADKFNKMPMTGDHLFRIASCTKSFIATGLHLLVQDGTVDLDEPITRWFPDLPKAAQMPVRILLNHRSGLPDFETSMPMISDKSWTAQEIVDFSFRHGVQKEPWHGMEYSNTGYVLAGMIIAHETGKPYSDHLRSRIFAPLGMKDTWVGTHETFPIEREARGYMHAAADDENPQWDVSGAGDPVDGVWDSTEWFPLSGANAAGDMVSTPRDIVKFLNALFDGRILDQKRLWEMKDNIKPAFFPGSNTVANGHGLLLMRYGSSELKGHLGQIPGHTSIMGRDEETGAALMLIQNSGAGDFESFYLKGVNEPVDRVLEAIKNSRS 363
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361  


Chain C from PDB  Type:PROTEIN  Length:358
 aligned with Q9LCC8_OCHAN | Q9LCC8 from UniProtKB/TrEMBL  Length:363

    Alignment length:361
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362 
         Q9LCC8_OCHAN     3 DLNNAIQGILDDHVARGVVGVSLALCLPGEETSLYQSGYADKFNKMPMTGDHLFRIASCTKSFIATGLHLLVQDGTVDLDEPITRWFPDLPKAAQMPVRILLNHRSGLPDFETSMPMISDKSWTAQEIVDFSFRHGVQKEPWHGMEYSNTGYVLAGMIIAHETGKPYSDHLRSRIFAPLGMKDTWVGTHETFPIEREARGYMHAAADDENPQWDVSGAGDPVDGVWDSTEWFPLSGANAAGDMVSTPRDIVKFLNALFDGRILDQKRLWEMKDNIKPAFFPGSNTVANGHGLLLMRYGSSELKGHLGQIPGHTSIMGRDEETGAALMLIQNSGAGDFESFYLKGVNEPVDRVLEAIKNSRS 363
               SCOP domains d2drwc_ C: D-Amino acid amidase DaaA                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh...eeeeeee......eeeeeeeee....ee......ee...hhhhhhhhhhhhhhhh.......hhhhh.....hhhhhhhhhhh.....................hhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhh.hhhhhhhhhh.........ee......hhhhh...eee.---.................eee.....hhhhhhhhh.eeehhhhhhhhhhhhhh....hhhhhhhhhh..ee.......eeee....eeeee..eeeeeeeeee..eeeeeee......eeeeee.ee.....hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2drw C   3 DLNNAIQGILDDHVARGVVGVSLALCLPGEETSLYQSGYADKFNKMPMTGDHLFRIASCTKSFIATGLHLLVQDGTVDLDEPITRWFPDLPKAAQMPVRILLNHRSGLPDFETSMPMISDKSWTAQEIVDFSFRHGVQKEPWHGMEYSNTGYVLAGMIIAHETGKPYSDHLRSRIFAPLGMKDTWVGTHETFPIEREARGYMHA---DENPQWDVSGAGDPVDGVWDSTEWFPLSGANAAGDMVSTPRDIVKFLNALFDGRILDQKRLWEMKDNIKPAFFPGSNTVANGHGLLLMRYGSSELKGHLGQIPGHTSIMGRDEETGAALMLIQNSGAGDFESFYLKGVNEPVDRVLEAIKNSRS 363
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202   |   212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362 
                                                                                                                                                                                                                                     206 210                                                                                                                                                         


Chain D from PDB  Type:PROTEIN  Length:350
 aligned with Q9LCC8_OCHAN | Q9LCC8 from UniProtKB/TrEMBL  Length:363

    Alignment length:362
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361  
         Q9LCC8_OCHAN     2 SDLNNAIQGILDDHVARGVVGVSLALCLPGEETSLYQSGYADKFNKMPMTGDHLFRIASCTKSFIATGLHLLVQDGTVDLDEPITRWFPDLPKAAQMPVRILLNHRSGLPDFETSMPMISDKSWTAQEIVDFSFRHGVQKEPWHGMEYSNTGYVLAGMIIAHETGKPYSDHLRSRIFAPLGMKDTWVGTHETFPIEREARGYMHAAADDENPQWDVSGAGDPVDGVWDSTEWFPLSGANAAGDMVSTPRDIVKFLNALFDGRILDQKRLWEMKDNIKPAFFPGSNTVANGHGLLLMRYGSSELKGHLGQIPGHTSIMGRDEETGAALMLIQNSGAGDFESFYLKGVNEPVDRVLEAIKNSRS 363
               SCOP domains d2drwd_ D: D-Amino acid amidase DaaA                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhh...eeeeeee......eeeeeeeee....ee......ee...hhhhhhhhhhhhhhhhh......hhhhh.....hhhhhhhhhhh.....................hhhhhhhhhhhhh............hhhhhhhhhhhhhhhh.hhhhhhhhhh.........ee......hhhhh...eee..------------.......eee.....hhhhhhhhh.eeehhhhhhhhhhhhhh....hhhhhhhhhh..ee.......eeee....eeeee..eeeeeeeeee..eeeeeeee....eeeeeee.eee....hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2drw D   2 SDLNNAIQGILDDHVARGVVGVSLALCLPGEETSLYQSGYADKFNKMPMTGDHLFRIASCTKSFIATGLHLLVQDGTVDLDEPITRWFPDLPKAAQMPVRILLNHRSGLPDFETSMPMISDKSWTAQEIVDFSFRHGVQKEPWHGMEYSNTGYVLAGMIIAHETGKPYSDHLRSRIFAPLGMKDTWVGTHETFPIEREARGYMHAA------------AGDPVDGVWDSTEWFPLSGANAAGDMVSTPRDIVKFLNALFDGRILDQKRLWEMKDNIKPAFFPGSNTVANGHGLLLMRYGSSELKGHLGQIPGHTSIMGRDEETGAALMLIQNSGAGDFESFYLKGVNEPVDRVLEAIKNSRS 363
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201     |   -       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361  
                                                                                                                                                                                                                                       207          220                                                                                                                                               


Chain E from PDB  Type:PROTEIN  Length:345
 aligned with Q9LCC8_OCHAN | Q9LCC8 from UniProtKB/TrEMBL  Length:363

    Alignment length:362
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361  
         Q9LCC8_OCHAN     2 SDLNNAIQGILDDHVARGVVGVSLALCLPGEETSLYQSGYADKFNKMPMTGDHLFRIASCTKSFIATGLHLLVQDGTVDLDEPITRWFPDLPKAAQMPVRILLNHRSGLPDFETSMPMISDKSWTAQEIVDFSFRHGVQKEPWHGMEYSNTGYVLAGMIIAHETGKPYSDHLRSRIFAPLGMKDTWVGTHETFPIEREARGYMHAAADDENPQWDVSGAGDPVDGVWDSTEWFPLSGANAAGDMVSTPRDIVKFLNALFDGRILDQKRLWEMKDNIKPAFFPGSNTVANGHGLLLMRYGSSELKGHLGQIPGHTSIMGRDEETGAALMLIQNSGAGDFESFYLKGVNEPVDRVLEAIKNSRS 363
               SCOP domains d2drwe_ E: D-Amino acid amidase DaaA                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh....eeeeeee.....eeeeeee....-..........ee...hhhhhhhhhhhhhhhh.......hhhhh.....hhhhhhhhhhh.....................hhhhhhhhhhhhh............hhhhhhhhhhhhhhhh.hhhhhhhhhh.........ee......hhhhh...eee.----------------....eee.....hhhhhhhhh.eeehhhhhhhhhhhhhh....hhhhhhhhhh..ee.......eeee....eeeee..eeeeeeeeee..eeeeeeee....eeeeeee.ee.....hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2drw E   2 SDLNNAIQGILDDHVARGVVGVSLALCLPGEETSLYQSGYADK-NKMPMTGDHLFRIASCTKSFIATGLHLLVQDGTVDLDEPITRWFPDLPKAAQMPVRILLNHRSGLPDFETSMPMISDKSWTAQEIVDFSFRHGVQKEPWHGMEYSNTGYVLAGMIIAHETGKPYSDHLRSRIFAPLGMKDTWVGTHETFPIEREARGYMHA----------------PVDGVWDSTEWFPLSGANAAGDMVSTPRDIVKFLNALFDGRILDQKRLWEMKDNIKPAFFPGSNTVANGHGLLLMRYGSSELKGHLGQIPGHTSIMGRDEETGAALMLIQNSGAGDFESFYLKGVNEPVDRVLEAIKNSRS 363
                                    11        21        31        41  | |   51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201    |    -         - |     231       241       251       261       271       281       291       301       311       321       331       341       351       361  
                                                                     44 |                                                                                                                                                             206              223                                                                                                                                            
                                                                       46                                                                                                                                                                                                                                                                                                                             


Chain F from PDB  Type:PROTEIN  Length:327
 aligned with Q9LCC8_OCHAN | Q9LCC8 from UniProtKB/TrEMBL  Length:363

    Alignment length:352
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356  
         Q9LCC8_OCHAN     7 AIQGILDDHVARGVVGVSLALCLPGEETSLYQSGYADKFNKMPMTGDHLFRIASCTKSFIATGLHLLVQDGTVDLDEPITRWFPDLPKAAQMPVRILLNHRSGLPDFETSMPMISDKSWTAQEIVDFSFRHGVQKEPWHGMEYSNTGYVLAGMIIAHETGKPYSDHLRSRIFAPLGMKDTWVGTHETFPIEREARGYMHAAADDENPQWDVSGAGDPVDGVWDSTEWFPLSGANAAGDMVSTPRDIVKFLNALFDGRILDQKRLWEMKDNIKPAFFPGSNTVANGHGLLLMRYGSSELKGHLGQIPGHTSIMGRDEETGAALMLIQNSGAGDFESFYLKGVNEPVDRVLEAI 358
               SCOP domains d2drwf_ F: D-Amino acid amidase DaaA                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhh...eeeeeee......eeeeee....---........ee.hhhhhhhhhhhhhhhhhh.......hhhhh.....hhhhhhhhhhh.....................hhhhhhhhhhhhh............hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh....ee......hhhhh......----------------------.......hhhhhhhhh.eeehhhhhhhhhhhhhh....hhhhhhhhhh..ee.......eeee....eeeee..eeeeeeeeee..eeeeeee......eeeeee........hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2drw F   7 AIQGILDDHVARGVVGVSLALCLPGEETSLYQSGYADK---MPMTGDHLFRIASCTKSFIATGLHLLVQDGTVDLDEPITRWFPDLPKAAQMPVRILLNHRSGLPDFETSMPMISDKSWTAQEIVDFSFRHGVQKEPWHGMEYSNTGYVLAGMIIAHETGKPYSDHLRSRIFAPLGMKDTWVGTHETFPIEREARGYMH----------------------WDSTEWFPLSGANAAGDMVSTPRDIVKFLNALFDGRILDQKRLWEMKDNIKPAFFPGSNTVANGHGLLLMRYGSSELKGHLGQIPGHTSIMGRDEETGAALMLIQNSGAGDFESFYLKGVNEPVDRVLEAI 358
                                    16        26        36       | - |      56        66        76        86        96       106       116       126       136       146       156       166       176       186       196        |-         -         - |     236       246       256       266       276       286       296       306       316       326       336       346       356  
                                                                44  48                                                                                                                                                          205                    228
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit
(-)
Class: Multi-domain proteins (alpha and beta) (2421)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9LCC8_OCHAN | Q9LCC8: 2dns 2efu 2efx

(-) Related Entries Specified in the PDB File

1ei5 D-AMINOPEPTIDASE
1gce CLASS C -LACTAMASE
2dns D-AMINO ACID AMIDASE COMPLEXED WITH D-PHENYLALANINE
3pte D-ALANYL-D-ALANINE CARBOXYPEPTIDASE TRANSPEPTIDASE