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(-) Description

Title :  THE CRYSTAL STRUCTURE OF D-AMINO ACID AMIDASE FROM OCHROBACTRUM ANTHROPI SV3 COMPLEXED WITH D-PHENYLALANINE
 
Authors :  S. Okazaki, A. Suzuki, H. Komeda, Y. Asano, T. Yamane
Date :  26 Apr 06  (Deposition) - 09 May 06  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Keywords :  D-Stereospecific, Amidase, D-Phenylalanine, Penicillin Recognize Protein, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Okazaki, A. Suzuki, H. Komeda, S. Yamaguchi, Y. Asano, T. Yamane
Crystal Structure And Functional Characterization Of A D-Stereospecific Amino Acid Amidase From Ochrobactrum Anthropi Sv3, A New Member Of The Penicillin-Recognizing Proteins
J. Mol. Biol. V. 368 79 2007
PubMed-ID: 17331533  |  Reference-DOI: 10.1016/J.JMB.2006.10.070
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - D-AMINO ACID AMIDASE
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PUC19
    Expression System Strain: JM109
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: OCHROBACTRUM ANTHROPI
    Organism Taxid: 529
    Strain: SV3

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): A     
Biological Unit 2 (1x):  B    
Biological Unit 3 (1x):   C   
Biological Unit 4 (1x):    D  
Biological Unit 5 (1x):     E 
Biological Unit 6 (1x):      F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 25)

Asymmetric Unit (2, 25)
No.NameCountTypeFull Name
1BA20Ligand/IonBARIUM ION
2DPN5Ligand/IonD-PHENYLALANINE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1BA-1Ligand/IonBARIUM ION
2DPN1Ligand/IonD-PHENYLALANINE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1BA-1Ligand/IonBARIUM ION
2DPN1Ligand/IonD-PHENYLALANINE
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1BA-1Ligand/IonBARIUM ION
2DPN1Ligand/IonD-PHENYLALANINE
Biological Unit 4 (1, 1)
No.NameCountTypeFull Name
1BA-1Ligand/IonBARIUM ION
2DPN1Ligand/IonD-PHENYLALANINE
Biological Unit 5 (1, 1)
No.NameCountTypeFull Name
1BA-1Ligand/IonBARIUM ION
2DPN1Ligand/IonD-PHENYLALANINE
Biological Unit 6 (0, 0)
No.NameCountTypeFull Name
1BA-1Ligand/IonBARIUM ION
2DPN-1Ligand/IonD-PHENYLALANINE

(-) Sites  (25, 25)

Asymmetric Unit (25, 25)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER C:121 , ASP C:122 , GLU C:232 , TRP C:233 , HOH C:3122 , HOH C:3156 , HOH C:3161BINDING SITE FOR RESIDUE BA C 3001
02AC2SOFTWARESER B:121 , ASP B:122 , GLU B:232 , TRP B:233 , HOH B:3059 , HOH B:3068 , HOH B:3095 , HOH B:3103BINDING SITE FOR RESIDUE BA B 3002
03AC3SOFTWARESER A:121 , ASP A:122 , GLU A:232 , TRP A:233 , HOH A:3023 , HOH A:3071BINDING SITE FOR RESIDUE BA A 3003
04AC4SOFTWAREGLU A:211 , HOH A:3059BINDING SITE FOR RESIDUE BA A 3004
05AC5SOFTWAREALA C:206 , ALA C:208 , HOH C:3046BINDING SITE FOR RESIDUE BA C 3005
06AC6SOFTWAREALA F:17BINDING SITE FOR RESIDUE BA F 3006
07AC7SOFTWAREBA F:3008BINDING SITE FOR RESIDUE BA A 3007
08AC8SOFTWAREGLU A:323 , BA A:3007 , BA A:3020 , BA B:3019 , SER F:301 , GLU F:323BINDING SITE FOR RESIDUE BA F 3008
09AC9SOFTWARESER C:301 , GLU C:323 , BA C:3011 , GLU D:323 , BA D:3012BINDING SITE FOR RESIDUE BA C 3009
10BC1SOFTWAREBA C:3011 , BA D:3012 , GLU E:323BINDING SITE FOR RESIDUE BA E 3010
11BC2SOFTWAREBA C:3009 , BA E:3010BINDING SITE FOR RESIDUE BA C 3011
12BC3SOFTWAREBA C:3009 , SER D:301 , GLU D:323 , BA E:3010BINDING SITE FOR RESIDUE BA D 3012
13BC4SOFTWAREASN D:286BINDING SITE FOR RESIDUE BA D 3013
14BC5SOFTWARESER F:121 , ASP F:122 , GLU F:232 , TRP F:233 , HOH F:3022 , HOH F:3044BINDING SITE FOR RESIDUE BA F 3014
15BC6SOFTWARESER D:121 , ASP D:122 , GLU D:232 , TRP D:233 , HOH D:3137BINDING SITE FOR RESIDUE BA D 3015
16BC7SOFTWARESER E:121 , ASP E:122 , GLU E:232 , TRP E:233 , HOH E:3051 , HOH E:3062BINDING SITE FOR RESIDUE BA E 3016
17BC8SOFTWAREASN D:360 , ARG D:362BINDING SITE FOR RESIDUE BA D 3017
18BC9SOFTWAREASN A:360 , SER A:363BINDING SITE FOR RESIDUE BA A 3018
19CC1SOFTWAREBA A:3020 , SER B:301 , GLU B:323 , BA F:3008BINDING SITE FOR RESIDUE BA B 3019
20CC2SOFTWARESER A:301 , GLU A:323 , GLU B:323 , BA B:3019 , BA F:3008BINDING SITE FOR RESIDUE BA A 3020
21CC3SOFTWAREALA A:59 , SER A:60 , PHE A:113 , GLU A:114 , PHE A:234 , ALA A:242 , GLY A:309 , GLN A:310 , HOH A:3027 , HOH A:3043BINDING SITE FOR RESIDUE DPN A 1060
22CC4SOFTWAREALA B:59 , SER B:60 , PHE B:113 , GLU B:114 , ASN B:151 , PHE B:234 , GLY B:309 , GLN B:310 , HOH B:3079BINDING SITE FOR RESIDUE DPN B 1060
23CC5SOFTWARESER C:60 , PHE C:113 , GLU C:114 , GLY C:309 , GLN C:310 , HOH C:3074BINDING SITE FOR RESIDUE DPN C 1060
24CC6SOFTWAREALA D:59 , SER D:60 , PHE D:113 , GLU D:114 , MET D:119 , ASN D:151 , PHE D:234 , GLY D:309 , GLN D:310BINDING SITE FOR RESIDUE DPN D 1060
25CC7SOFTWARESER E:60 , GLU E:114 , ASN E:151 , GLY E:309 , GLN E:310BINDING SITE FOR RESIDUE DPN E 1060

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2DNS)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric Unit
No.Residues
1Ser B:218 -Gly B:219
2Val B:224 -Asp B:225
3Asp B:225 -Gly B:226
4Ala C:207 -Ala C:208
5Pro D:283 -Gly D:284

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2DNS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2DNS)

(-) Exons   (0, 0)

(no "Exon" information available for 2DNS)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:362
 aligned with Q9LCC8_OCHAN | Q9LCC8 from UniProtKB/TrEMBL  Length:363

    Alignment length:362
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361  
         Q9LCC8_OCHAN     2 SDLNNAIQGILDDHVARGVVGVSLALCLPGEETSLYQSGYADKFNKMPMTGDHLFRIASCTKSFIATGLHLLVQDGTVDLDEPITRWFPDLPKAAQMPVRILLNHRSGLPDFETSMPMISDKSWTAQEIVDFSFRHGVQKEPWHGMEYSNTGYVLAGMIIAHETGKPYSDHLRSRIFAPLGMKDTWVGTHETFPIEREARGYMHAAADDENPQWDVSGAGDPVDGVWDSTEWFPLSGANAAGDMVSTPRDIVKFLNALFDGRILDQKRLWEMKDNIKPAFFPGSNTVANGHGLLLMRYGSSELKGHLGQIPGHTSIMGRDEETGAALMLIQNSGAGDFESFYLKGVNEPVDRVLEAIKNSRS 363
               SCOP domains d2dnsa_ A: D-Amino acid amidase DaaA                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh....eeeeeee......eeeeeeeee....ee......ee...hhhhhhhhhhhhhhhh.......hhhhh.....hhhhhhhhhhh.....................hhhhhhhhhhhhh............hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh....ee......hhhhh...eee.....................eee.....hhhhhhhhh.eeehhhhhhhhhhhhh.....hhhhhhhhhh..ee.......eeee....eeeee..eeeeeeeeee..eeeeeee......eeeeee.ee.....hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2dns A   2 SDLNNAIQGILDDHVARGVVGVSLALCLPGEETSLYQSGYADKFNKMPMTGDHLFRIASCTKSFIATGLHLLVQDGTVDLDEPITRWFPDLPKAAQMPVRILLNHRSGLPDFETSMPMISDKSWTAQEIVDFSFRHGVQKEPWHGMEYSNTGYVLAGMIIAHETGKPYSDHLRSRIFAPLGMKDTWVGTHETFPIEREARGYMHAAADDENPQWDVSGAGDPVDGVWDSTEWFPLSGANAAGDMVSTPRDIVKFLNALFDGRILDQKRLWEMKDNIKPAFFPGSNTVANGHGLLLMRYGSSELKGHLGQIPGHTSIMGRDEETGAALMLIQNSGAGDFESFYLKGVNEPVDRVLEAIKNSRS 363
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361  


Chain B from PDB  Type:PROTEIN  Length:362
 aligned with Q9LCC8_OCHAN | Q9LCC8 from UniProtKB/TrEMBL  Length:363

    Alignment length:362
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361  
         Q9LCC8_OCHAN     2 SDLNNAIQGILDDHVARGVVGVSLALCLPGEETSLYQSGYADKFNKMPMTGDHLFRIASCTKSFIATGLHLLVQDGTVDLDEPITRWFPDLPKAAQMPVRILLNHRSGLPDFETSMPMISDKSWTAQEIVDFSFRHGVQKEPWHGMEYSNTGYVLAGMIIAHETGKPYSDHLRSRIFAPLGMKDTWVGTHETFPIEREARGYMHAAADDENPQWDVSGAGDPVDGVWDSTEWFPLSGANAAGDMVSTPRDIVKFLNALFDGRILDQKRLWEMKDNIKPAFFPGSNTVANGHGLLLMRYGSSELKGHLGQIPGHTSIMGRDEETGAALMLIQNSGAGDFESFYLKGVNEPVDRVLEAIKNSRS 363
               SCOP domains d2dnsb_ B: D-Amino acid amidase DaaA                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhh...eeeeeee......eeeeeeeee....ee......ee..hhhhhhhhhhhhhhhhh.......hhhhh.....hhhhhhhhhhh.....................hhhhhhhhhhhhh............hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh....ee......hhhhh...eee.....................eee.....hhhhhhhhh.eeehhhhhhhhhhhhhh....hhhhhhhhhh..ee.......eeee....eeeee..eeeeeeeeee..eeeeeeee....eeeeeee.ee.....hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2dns B   2 SDLNNAIQGILDDHVARGVVGVSLALCLPGEETSLYQSGYADKFNKMPMTGDHLFRIASCTKSFIATGLHLLVQDGTVDLDEPITRWFPDLPKAAQMPVRILLNHRSGLPDFETSMPMISDKSWTAQEIVDFSFRHGVQKEPWHGMEYSNTGYVLAGMIIAHETGKPYSDHLRSRIFAPLGMKDTWVGTHETFPIEREARGYMHAAADDENPQWDVSGAGDPVDGVWDSTEWFPLSGANAAGDMVSTPRDIVKFLNALFDGRILDQKRLWEMKDNIKPAFFPGSNTVANGHGLLLMRYGSSELKGHLGQIPGHTSIMGRDEETGAALMLIQNSGAGDFESFYLKGVNEPVDRVLEAIKNSRS 363
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361  


Chain C from PDB  Type:PROTEIN  Length:360
 aligned with Q9LCC8_OCHAN | Q9LCC8 from UniProtKB/TrEMBL  Length:363

    Alignment length:360
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362
         Q9LCC8_OCHAN     3 DLNNAIQGILDDHVARGVVGVSLALCLPGEETSLYQSGYADKFNKMPMTGDHLFRIASCTKSFIATGLHLLVQDGTVDLDEPITRWFPDLPKAAQMPVRILLNHRSGLPDFETSMPMISDKSWTAQEIVDFSFRHGVQKEPWHGMEYSNTGYVLAGMIIAHETGKPYSDHLRSRIFAPLGMKDTWVGTHETFPIEREARGYMHAAADDENPQWDVSGAGDPVDGVWDSTEWFPLSGANAAGDMVSTPRDIVKFLNALFDGRILDQKRLWEMKDNIKPAFFPGSNTVANGHGLLLMRYGSSELKGHLGQIPGHTSIMGRDEETGAALMLIQNSGAGDFESFYLKGVNEPVDRVLEAIKNSR 362
               SCOP domains d2dnsc_ C: D-Amino acid amidase DaaA                                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh...eeeeeee......eeeeeeeee....ee......ee...hhhhhhhhhhhhhhhh.......hhhhh.....hhhhhhhhhhh.....................hhhhhhhhhhhhh............hhhhhhhhhhhhhhhh.hhhhhhhhhh.........ee......hhhhh...eee.....................eee.....hhhhhhhhh.eeehhhhhhhhhhhhhh....hhhhhhhhhh..ee.......eeee....eeeee..eeeeeeeeee..eeeeeee......eeeeee.ee.....hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2dns C   3 DLNNAIQGILDDHVARGVVGVSLALCLPGEETSLYQSGYADKFNKMPMTGDHLFRIASCTKSFIATGLHLLVQDGTVDLDEPITRWFPDLPKAAQMPVRILLNHRSGLPDFETSMPMISDKSWTAQEIVDFSFRHGVQKEPWHGMEYSNTGYVLAGMIIAHETGKPYSDHLRSRIFAPLGMKDTWVGTHETFPIEREARGYMHAAADDENPQWDVSGAGDPVDGVWDSTEWFPLSGANAAGDMVSTPRDIVKFLNALFDGRILDQKRLWEMKDNIKPAFFPGSNTVANGHGLLLMRYGSSELKGHLGQIPGHTSIMGRDEETGAALMLIQNSGAGDFESFYLKGVNEPVDRVLEAIKNSR 362
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362


Chain D from PDB  Type:PROTEIN  Length:355
 aligned with Q9LCC8_OCHAN | Q9LCC8 from UniProtKB/TrEMBL  Length:363

    Alignment length:361
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361 
         Q9LCC8_OCHAN     2 SDLNNAIQGILDDHVARGVVGVSLALCLPGEETSLYQSGYADKFNKMPMTGDHLFRIASCTKSFIATGLHLLVQDGTVDLDEPITRWFPDLPKAAQMPVRILLNHRSGLPDFETSMPMISDKSWTAQEIVDFSFRHGVQKEPWHGMEYSNTGYVLAGMIIAHETGKPYSDHLRSRIFAPLGMKDTWVGTHETFPIEREARGYMHAAADDENPQWDVSGAGDPVDGVWDSTEWFPLSGANAAGDMVSTPRDIVKFLNALFDGRILDQKRLWEMKDNIKPAFFPGSNTVANGHGLLLMRYGSSELKGHLGQIPGHTSIMGRDEETGAALMLIQNSGAGDFESFYLKGVNEPVDRVLEAIKNSR 362
               SCOP domains d2dnsd_ D: D-Amino acid amidase DaaA                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh...eeeeeee......eeeeeeeee....ee......ee...hhhhhhhhhhhhhhhh.......hhhhh.....hhhhhhhhhhh.....................hhhhhhhhhhhhh............hhhhhhhhhhhhhhhh.hhhhhhhhhh.........ee......hhhhh...eee...----....--........eee.....hhhhhhhhh.eeehhhhhhhhhhhhhh....hhhhhhhhhh..ee.......eeee....eeeee..eeeeeeeeee..eeeeeeee.....eeeeee.ee.....hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2dns D   2 SDLNNAIQGILDDHVARGVVGVSLALCLPGEETSLYQSGYADKFNKMPMTGDHLFRIASCTKSFIATGLHLLVQDGTVDLDEPITRWFPDLPKAAQMPVRILLNHRSGLPDFETSMPMISDKSWTAQEIVDFSFRHGVQKEPWHGMEYSNTGYVLAGMIIAHETGKPYSDHLRSRIFAPLGMKDTWVGTHETFPIEREARGYMHAAA----PQWD--GAGDPVDGVWDSTEWFPLSGANAAGDMVSTPRDIVKFLNALFDGRILDQKRLWEMKDNIKPAFFPGSNTVANGHGLLLMRYGSSELKGHLGQIPGHTSIMGRDEETGAALMLIQNSGAGDFESFYLKGVNEPVDRVLEAIKNSR 362
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201      |  - |  |  221       231       241       251       261       271       281       291       301       311       321       331       341       351       361 
                                                                                                                                                                                                                                        208  213  |  |                                                                                                                                               
                                                                                                                                                                                                                                                216  |                                                                                                                                               
                                                                                                                                                                                                                                                   219                                                                                                                                               


Chain E from PDB  Type:PROTEIN  Length:349
 aligned with Q9LCC8_OCHAN | Q9LCC8 from UniProtKB/TrEMBL  Length:363

    Alignment length:360
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361
         Q9LCC8_OCHAN     2 SDLNNAIQGILDDHVARGVVGVSLALCLPGEETSLYQSGYADKFNKMPMTGDHLFRIASCTKSFIATGLHLLVQDGTVDLDEPITRWFPDLPKAAQMPVRILLNHRSGLPDFETSMPMISDKSWTAQEIVDFSFRHGVQKEPWHGMEYSNTGYVLAGMIIAHETGKPYSDHLRSRIFAPLGMKDTWVGTHETFPIEREARGYMHAAADDENPQWDVSGAGDPVDGVWDSTEWFPLSGANAAGDMVSTPRDIVKFLNALFDGRILDQKRLWEMKDNIKPAFFPGSNTVANGHGLLLMRYGSSELKGHLGQIPGHTSIMGRDEETGAALMLIQNSGAGDFESFYLKGVNEPVDRVLEAIKNS 361
               SCOP domains d2dnse_ E: D-Amino acid amidase DaaA                                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh.....eeeeee......eeee......--.........ee..hhhhhhhhhhhhhhhhh.......hhhhh.....hhhhhhhhhhh.....................hhhhhhhhhhhhh............hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh....ee......hhhhh...eee.--------..-.........eee.....hhhhhhhhh.eeehhhhhhhhhhhhhh....hhhhhhhhhh..ee.......eeee....eeeee..eeeeeeeeee..eeeeeeee.....eeeeee.ee.....hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2dns E   2 SDLNNAIQGILDDHVARGVVGVSLALCLPGEETSLYQSGYADK--KMPMTGDHLFRIASCTKSFIATGLHLLVQDGTVDLDEPITRWFPDLPKAAQMPVRILLNHRSGLPDFETSMPMISDKSWTAQEIVDFSFRHGVQKEPWHGMEYSNTGYVLAGMIIAHETGKPYSDHLRSRIFAPLGMKDTWVGTHETFPIEREARGYMHA--------WD-SGAGDPVDGVWDSTEWFPLSGANAAGDMVSTPRDIVKFLNALFDGRILDQKRLWEMKDNIKPAFFPGSNTVANGHGLLLMRYGSSELKGHLGQIPGHTSIMGRDEETGAALMLIQNSGAGDFESFYLKGVNEPVDRVLEAIKNS 361
                                    11        21        31        41  |  |  51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201    |    -   || |221       231       241       251       261       271       281       291       301       311       321       331       341       351       361
                                                                     44 47                                                                                                                                                            206      215| |                                                                                                                                               
                                                                                                                                                                                                                                                216 |                                                                                                                                               
                                                                                                                                                                                                                                                  218                                                                                                                                               


Chain F from PDB  Type:PROTEIN  Length:300
 aligned with Q9LCC8_OCHAN | Q9LCC8 from UniProtKB/TrEMBL  Length:363

    Alignment length:351
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357 
         Q9LCC8_OCHAN     8 IQGILDDHVARGVVGVSLALCLPGEETSLYQSGYADKFNKMPMTGDHLFRIASCTKSFIATGLHLLVQDGTVDLDEPITRWFPDLPKAAQMPVRILLNHRSGLPDFETSMPMISDKSWTAQEIVDFSFRHGVQKEPWHGMEYSNTGYVLAGMIIAHETGKPYSDHLRSRIFAPLGMKDTWVGTHETFPIEREARGYMHAAADDENPQWDVSGAGDPVDGVWDSTEWFPLSGANAAGDMVSTPRDIVKFLNALFDGRILDQKRLWEMKDNIKPAFFPGSNTVANGHGLLLMRYGSSELKGHLGQIPGHTSIMGRDEETGAALMLIQNSGAGDFESFYLKGVNEPVDRVLEAI 358
               SCOP domains d2dnsf_ F:         D-   Amin             o acid amidase DaaA                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh--------...---....-------------.......ee.hhhhhhhhhhhhhhhhhh.......hhhhh.....hhhhhhhhhhh........hhhhh........hhhhhhhhhhhhh............hhhhhhhhhhhhhhhh.hhhhhhhhhh.........ee......hhhhh...ee.-----------------------......hhhhhhhhh.eeehhhhhhhhhhhhhh....hhhhhhhhhh..ee.......eeee....eeeee..eeeeeeeeee..eeeeeeee.....eeeeee.ee...--...--.hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2dns F   8 IQGILDDHVA--------ALC---EETS-------------PMTGDHLFRIASCTKSFIATGLHLLVQDGTVDLDEPITRWFPDLPKAAQMPVRILLNHRSGLPDFETSMPMISDKSWTAQEIVDFSFRHGVQKEPWHGMEYSNTGYVLAGMIIAHETGKPYSDHLRSRIFAPLGMKDTWVGTHETFPIEREARGYMH-----------------------DSTEWFPLSGANAAGDMVSTPRDIVKFLNALFDGRILDQKRLWEMKDNIKPAFFPGSNTVANGHGLLLMRYGSSELKGHLGQIPGHTSIMGRDEETGAALMLIQNSGAGD--SFY--GVNEPVDRVLEAI 358
                                    17        27|   |  | -         - |      57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       | -         -         - |     237       247       257       267       277       287       297       307       317       327       337|  | | 347       357 
                                    17       26 |  32 35            49                                                                                                                                                         205                     229                                                                                                          338  | |  |            
                                               28                                                                                                                                                                                                                                                                                                                      341 |  |            
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Class: Multi-domain proteins (alpha and beta) (2421)

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 Related Entries

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        Q9LCC8_OCHAN | Q9LCC8: 2drw 2efu 2efx

(-) Related Entries Specified in the PDB File

2d83 THE NATIVE STRUCTURE OF D-AMINO ACID AMIDASE