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Title :   SOLUTION STRUCTURE OF THE N-TERMINAL C2H2 TYPE ZINC-BINDING DOMAIN OF THE ZINC FINGER PROTEIN 64, ISOFORMS 1 AND 2

Authors :   M. Yoneyama, N. Tochio, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)

Date :   21 Apr 06 (Deposition) - 21 Oct 06 (Release) - 24 Feb 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (20x)

Keywords :   Zinc Finger Protein 338, Znf338, Nuclear Protein, Dna- Binding, Transcription, C2H2-Type Zinc Finger, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Yoneyama, N. Tochio, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama
Solution Structure Of The N-Terminal C2H2 Type Zinc-Binding Domain Of The Zinc Finger Protein 64, Isoforms 1 And 2
To Be Published
PubMed: search
(for further references see the PDB file header)

Molecule 1 - ZINC FINGER PROTEIN 64, ISOFORMS 1 AND 2
	Chains	:	A
	Engineered	:	YES
	Expression System	:	CELL FREE SYNTHESIS
	Expression System Plasmid	:	P050815-12
	Expression System Vector Type	:	PLASMID
	Fragment	:	C2H2-TYPE ZINC-BINDING DOMAIN
	Gene	:	ZFP64
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Other Details	:	CELL-FREE PROTEIN SYNTHESIS
	Synonym	:	ZINC FINGER PROTEIN 338


NMR Structure (20x)	:

Summary Information (see also Sequences/Alignments below)

NMR Structure (1, 3)

No.	Name	Count	Type	Full Name
1	ZN	3	Ligand/Ion	ZINC ION

NMR Structure (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	CYS A:11 , VAL A:13 , CYS A:14 , HIS A:27 , HIS A:31	BINDING SITE FOR RESIDUE ZN A 191
2	AC2	SOFTWARE	CYS A:39 , CYS A:42 , HIS A:55 , HIS A:59	BINDING SITE FOR RESIDUE ZN A 241
3	AC3	SOFTWARE	CYS A:67 , CYS A:70 , HIS A:83 , HIS A:87	BINDING SITE FOR RESIDUE ZN A 291

(no "SS Bond" information available for 2DMD)

(no "Cis Peptide Bond" information available for 2DMD)

(no "SAP(SNP)/Variant" information available for 2DMD)

NMR Structure (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZINC_FINGER_C2H2_1	PS00028	Zinc finger C2H2 type domain signature.	ZF64A_HUMAN	177-197 261-281 289-310 345-365 427-447	1	A:11-31 - - - -

NMR Structure (3, 3)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.2a	ENST00000216923	2a	ENSE00001882484	chr20:50808525-50808130	396	ZF64A_HUMAN	1-16	16	0	-	-
1.3a	ENST00000216923	3a	ENSE00001688221	chr20:50803610-50803371	240	ZF64A_HUMAN	16-96	81	1	A:1-6	6
1.5	ENST00000216923	5	ENSE00001660242	chr20:50782564-50782403	162	ZF64A_HUMAN	96-150	55	0	-	-
1.6	ENST00000216923	6	ENSE00001689419	chr20:50781296-50781234	63	ZF64A_HUMAN	150-171	22	0	-	-
1.7b	ENST00000216923	7b	ENSE00000662759	chr20:50776913-50776662	252	ZF64A_HUMAN	171-255	85	1	A:7-89 (gaps)	85
1.15a	ENST00000216923	15a	ENSE00001455405	chr20:50769967-50767817	2151	ZF64A_HUMAN	255-681	427	1	A:89-96 (gaps)	58

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:96
 aligned with ZF64A_HUMAN | Q9NPA5 from UniProtKB/Swiss-Prot  Length:681

    Alignment length:255
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307     
          ZF64A_HUMAN    58 GTSAAAPSTVQFVSEETVPATQTQTTTRTITSETQTITVSAPEFVFEHGYQTYLPTESNENQTATVISLPAKSRTKKPTTPPAQKRLNCCYPGCQFKTAYGMKDMERHLKIHTGDKPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDAPFQCWLCSAKFKISSDLKRHMRVHSGEKPFKCEFCNVRCTMKGNLKSHIRIKHSG 312
               SCOP domains --------------------------------------------------------------------------------------------------------------------d2dmda2 A:8-33            d2dmda1 A:34-61             d2dmda3 A:62-90              -------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......-----------------------------------------------------------------------------------------------------------.--............hhhhhhhhhhhh.....ee......ee.hhhhhhhhhhhh.....ee......ee.hhhhhhhhhh.....-------------------------....-------------------------.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------ZINC_FINGER_C2H2_1   ---------------------------------------------------------------ZINC_FINGER_C2H2_1   -------ZINC_FINGER_C2H2_1    -- PROSITE
           Transcript 1 (1) Exon 1.3a  PDB: A:1-6 UniProt: 16-96   -----------------------------------------------------Exon 1.6  PDB: -      -----------------------------------------------------------------------------------Exon 1.15a  PDB: A:89-96 (gaps) UniProt: 255-681           Transcript 1 (1)
           Transcript 1 (2) --------------------------------------Exon 1.5  PDB: - UniProt: 96-150                       --------------------Exon 1.7b  PDB: A:7-89 (gaps) UniProt: 171-255                                       --------------------------------------------------------- Transcript 1 (2)
                 2dmd A   1 GSSGSS-----------------------------------------------------------------------------------------------------------G--PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGD-------------------------SGPS-------------------------SG  96
                                 |   -         -         -         -         -         -         -         -         -         -         -   |  | 11        21        31        41        51        61        71        81        |-         -         -    |  | -         -         -   | 
                                 6                                                                                                           7  8                                                                                90                        91 94                        95

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

NMR Structure

Classes(

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Folds(

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Superfamilies( (-)

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Families(

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Protein Domains( (-)

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Organisms( (-)

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Class: Small proteins (3458)

Fold: beta-beta-alpha zinc fingers (183)

Superfamily: beta-beta-alpha zinc fingers (183)

Family: Classic zinc finger, C2H2 (162)

Protein domain: Zinc finger protein 64, ZFP68 (2)

Human (Homo sapiens) [TaxId: 9606] (2)

1a	d2dmda1	A:34-61
1b	d2dmda2	A:8-33
1c	d2dmda3	A:62-90

(no "CATH Domain" information available for 2DMD)

(no "Pfam Domain" information available for 2DMD)

NMR Structure(hide GO term definitions)

Chain A (ZF64A_HUMAN | Q9NPA5)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0003676	nucleic acid binding	Interacting selectively and non-covalently with any nucleic acid.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.
cellular component
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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	ZF64A_HUMAN \| Q9NPA5	:	1x5w

1x5w	THE DIFFERENT FRAGMENT FROM THE SAME PROTEIN RELATED ID: HSS001003730.2 RELATED DB: TARGETDB

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