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2DMD
Asym. Unit
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Asym.Unit (485 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE N-TERMINAL C2H2 TYPE ZINC-BINDING DOMAIN OF THE ZINC FINGER PROTEIN 64, ISOFORMS 1 AND 2
Authors
:
M. Yoneyama, N. Tochio, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
21 Apr 06 (Deposition) - 21 Oct 06 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Zinc Finger Protein 338, Znf338, Nuclear Protein, Dna- Binding, Transcription, C2H2-Type Zinc Finger, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Yoneyama, N. Tochio, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama
Solution Structure Of The N-Terminal C2H2 Type Zinc-Binding Domain Of The Zinc Finger Protein 64, Isoforms 1 And 2
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
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Label:
No.
Name
Count
Type
Full Name
1
ZN
3
Ligand/Ion
ZINC ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:11 , VAL A:13 , CYS A:14 , HIS A:27 , HIS A:31
BINDING SITE FOR RESIDUE ZN A 191
2
AC2
SOFTWARE
CYS A:39 , CYS A:42 , HIS A:55 , HIS A:59
BINDING SITE FOR RESIDUE ZN A 241
3
AC3
SOFTWARE
CYS A:67 , CYS A:70 , HIS A:83 , HIS A:87
BINDING SITE FOR RESIDUE ZN A 291
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available in "Model" view)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ZINC_FINGER_C2H2_1 (A:11-31|-|-|-|-)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_FINGER_C2H2_1
PS00028
Zinc finger C2H2 type domain signature.
ZF64A_HUMAN
177-197
261-281
289-310
345-365
427-447
1
A:11-31
-
-
-
-
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Exons
(3, 3)
Info
All Exons
Exon 1.3a (A:1-6)
Exon 1.7b (A:7-89 (gaps))
Exon 1.15a (A:89-96 (gaps))
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All Exon Boundaries
1: Boundary 1.2a/1.3a
2: Boundary 1.3a/1.5
3: Boundary 1.6/1.7b
4: Boundary 1.7b/1.15a
5: Boundary 1.15a/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000216923
2a
ENSE00001882484
chr20:
50808525-50808130
396
ZF64A_HUMAN
1-16
16
0
-
-
1.3a
ENST00000216923
3a
ENSE00001688221
chr20:
50803610-50803371
240
ZF64A_HUMAN
16-96
81
1
A:1-6
6
1.5
ENST00000216923
5
ENSE00001660242
chr20:
50782564-50782403
162
ZF64A_HUMAN
96-150
55
0
-
-
1.6
ENST00000216923
6
ENSE00001689419
chr20:
50781296-50781234
63
ZF64A_HUMAN
150-171
22
0
-
-
1.7b
ENST00000216923
7b
ENSE00000662759
chr20:
50776913-50776662
252
ZF64A_HUMAN
171-255
85
1
A:7-89 (gaps)
85
1.15a
ENST00000216923
15a
ENSE00001455405
chr20:
50769967-50767817
2151
ZF64A_HUMAN
255-681
427
1
A:89-96 (gaps)
58
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SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d2dmda1 (A:34-61)
1b: SCOP_d2dmda2 (A:8-33)
1c: SCOP_d2dmda3 (A:62-90)
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Protein Domains
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Organisms
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Class
:
Small proteins
(3458)
Fold
:
beta-beta-alpha zinc fingers
(183)
Superfamily
:
beta-beta-alpha zinc fingers
(183)
Family
:
Classic zinc finger, C2H2
(162)
Protein domain
:
Zinc finger protein 64, ZFP68
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d2dmda1
A:34-61
1b
d2dmda2
A:8-33
1c
d2dmda3
A:62-90
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CATH Domains
(0, 0)
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Pfam Domains
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Chain A
Asymmetric Unit 1
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