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(-) Description

Title :  SOLUTION STRUCTURE OF THE TANDEM FOUR ZF-C2H2 DOMAIN REPEATS OF MURINE GLI-KRUPPEL FAMILY MEMBER HKR3
 
Authors :  K. Inoue, F. Hayashi, K. Izumi, M. Yoshida, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  20 Apr 06  (Deposition) - 20 Oct 06  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Zf-C2H2 Domain, Gli-Kruppel Family Member Hkr3, Hkr3, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Inoue, F. Hayashi, K. Izumi, M. Yoshida, S. Yokoyama
Solution Structure Of The Tandem Four Zf-C2H2 Domain Repeats Of Murine Gli-Kruppel Family Member Hkr3
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GLI-KRUPPEL FAMILY MEMBER HKR3
    Chains: A
    Engineered: YES
    Expression System: CELL FREE SYNTHESIS
    Expression System Plasmid: P050302-67
    Expression System Vector Type: PLASMID
    Fragment: ZF-C2H2 DOMAIN, RESIDUES 8-118
    Gene: HKR3
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Other Details: CELL-FREE PROTEIN SYNTHESIS

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

NMR Structure (1, 4)
No.NameCountTypeFull Name
1ZN4Ligand/IonZINC ION

(-) Sites  (4, 4)

NMR Structure (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:10 , CYS A:13 , HIS A:26 , HIS A:30BINDING SITE FOR RESIDUE ZN A 200
2AC2SOFTWARECYS A:38 , CYS A:41 , HIS A:54 , CYS A:59BINDING SITE FOR RESIDUE ZN A 300
3AC3SOFTWARECYS A:69 , CYS A:72 , HIS A:85 , HIS A:89BINDING SITE FOR RESIDUE ZN A 400
4AC4SOFTWARECYS A:97 , CYS A:100 , HIS A:113 , HIS A:118BINDING SITE FOR RESIDUE ZN A 500

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2DLQ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2DLQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2DLQ)

(-) PROSITE Motifs  (1, 3)

NMR Structure (1, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZINC_FINGER_C2H2_1PS00028 Zinc finger C2H2 type domain signature.TZAP_MOUSE286-306
345-365
373-394
402-423
460-480
488-508
516-537
545-565
573-593		  3A:10-30
A:69-89
A:97-118
-
-
-
-
-
-

(-) Exons   (0, 0)

(no "Exon" information available for 2DLQ)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:124
 aligned with TZAP_MOUSE | Q1H9T6 from UniProtKB/Swiss-Prot  Length:681

    Alignment length:134
                                   276       286       296       306       316       326       336       346       356       366       376       386       396    
           TZAP_MOUSE   267 GSLTAEPTDSRKGAAVPVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHGAPKPH 400
               SCOP domains -----------------d2dlqa4 A:8-34             d2dlqa2 A:35-62             d2dlqa3 A:63-92               d2dlqa1 A:93-118          ------ SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..---------.....-...........hhhhhhhhhhhhh...............hhhhhhhhhhhh........ee......ee.hhhhhhhhhhhhh....ee......ee.hhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------ZINC_FINGER_C2H2_1   --------------------------------------ZINC_FINGER_C2H2_1   -------ZINC_FINGER_C2H2_1    ------ PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2dlq A   1 GS---------SGSSG-VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPSSG 124
                             |       - |   | |10        20        30        40        50        60        70        80        90       100       110       120    
                             2         3   7 8
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

NMR Structure
(-)
Class: Small proteins (3458)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2DLQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2DLQ)

(-) Gene Ontology  (9, 9)

NMR Structure(hide GO term definitions)
Chain A   (TZAP_MOUSE | Q1H9T6)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0003676    nucleic acid binding    Interacting selectively and non-covalently with any nucleic acid.
biological process
    GO:0008150    biological_process    Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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  2dlq
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TZAP_MOUSE | Q1H9T6: 2yy9

(-) Related Entries Specified in the PDB File

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