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(-) Description

Title :  CRYSTAL STRUCTURE OF BTB DOMAIN FROM MOUSE HKR3
 
Authors :  S. Kishishita, A. Nishino, K. Murayama, T. Terada, M. Shirouzu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  27 Apr 07  (Deposition) - 29 Apr 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Btb Domain, Mouse, Hkr3, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Kishishita, A. Nishino, K. Murayama, T. Terada, M. Shirouzu, S. Yokoyama
Crystal Structure Of Btb Domain From Mouse Hkr3
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ZINC FINGER AND BTB DOMAIN-CONTAINING PROTEIN 48
    Chains: A, B
    Engineered: YES
    Expression System: CELL-FREE PROTEIN SYNTHESIS
    Expression System Plasmid: PX060116-03
    Expression System Vector Type: PLASMID
    Fragment: BTB DOMAIN, UNP RESIDUES 8-129
    Gene: HKR3
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: KRUEPPEL-RELATED ZINC FINGER PROTEIN 3, PROTEIN HKR3

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

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(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2YY9)

(-) PROSITE Motifs  (1, 2)

Asymmetric/Biological Unit (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1BTBPS50097 BTB domain profile.TZAP_MOUSE26-89
 		  2A:26-89
B:26-89

(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:106
 aligned with TZAP_MOUSE | Q1H9T6 from UniProtKB/Swiss-Prot  Length:681

    Alignment length:114
                                    12        22        32        42        52        62        72        82        92       102       112    
           TZAP_MOUSE     3 GSFVQHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGTGGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAAKELRVPEAVELCQSFQP 116
               SCOP domains d    2yy9a_ A: automated matches                                                                                   SCOP domains
               CATH domains 2    yy9A00 A:7-116 Potassium Channel Kv1.1; Chain A                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author h----hhhhhhhhhhhhhhh.....eeeee..eeeeehhhhhhhhhhhhhhh..----..eeehhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh.hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------BTB  PDB: A:26-89 UniProt: 26-89                                --------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 2yy9 A   7 G----HSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYG----GSVVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAAKELRVPEAVELCQSFQP 116
                            |    |  12        22        32        42        52   |    62        72        82        92       102       112    
                            |    8                                              56   61                                                       
                            7                                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:109
 aligned with TZAP_MOUSE | Q1H9T6 from UniProtKB/Swiss-Prot  Length:681

    Alignment length:113
                                    11        21        31        41        51        61        71        81        91       101       111   
           TZAP_MOUSE     2 DGSFVQHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGTGGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAAKELRVPEAVELCQSF 114
               SCOP domains d2    yy9b_ B: automated matches                                                                                  SCOP domains
               CATH domains 2y    y9B00 B:6-114 Potassium Channel Kv1.1; Chain A                                                              CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .h----hhhhhhhhhhhhhh......eeeee..eeeeehhhhhhhhhhhhhhhhhh.....eee...hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------BTB  PDB: B:26-89 UniProt: 26-89                                ------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 2yy9 B   6 SG----HSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGTGGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAAKELRVPEAVELCQSF 114
                             |    | 11        21        31        41        51        61        71        81        91       101       111   
                             7    8
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2YY9)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (TZAP_MOUSE | Q1H9T6)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0003676    nucleic acid binding    Interacting selectively and non-covalently with any nucleic acid.
biological process
    GO:0008150    biological_process    Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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        TZAP_MOUSE | Q1H9T6: 2dlq

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