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(-) Description

Title :  CRYSTAL STRUCTURE OF THE COMPLEX OF SULFATE ION AND OCTAMERIC RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE (RUBISCO) FROM PYROCOCCUS HORIKOSHII OT3 (FORM-2 CRYSTAL)
 
Authors :  E. Mizohata, C. Mishima, R. Akasaka, H. Uda, T. Terada, M. Shirouzu, S. Y Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  10 Nov 05  (Deposition) - 10 May 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B,D,E
Biol. Unit 1:  A,B,D,E  (2x)
Biol. Unit 2:  A,E  (1x)
Biol. Unit 3:  B  (2x)
Biol. Unit 4:  D  (2x)
Keywords :  Alpha/Beta Barrel, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Mizohata, C. Mishima, R. Akasaka, H. Uda, T. Terada, M. Shirouzu, S. Yokoyama
Crystal Structure Of The Complex Of Sulfate Ion And Octameric Ribulose-1, 5-Bisphosphate Carboxylase/Oxygenase (Rubisco) From Pyrococcus Horikoshii Ot3 (Form-2 Crystal)
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - RIBULOSE BISPHOSPHATE CARBOXYLASE
    Chains: A, B, D, E
    EC Number: 4.1.1.39
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET11A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: PYROCOCCUS HORIKOSHII
    Organism Taxid: 70601
    Strain: OT3
    Synonym: RUBISCO, RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABDE
Biological Unit 1 (2x): ABDE
Biological Unit 2 (1x): A  E
Biological Unit 3 (2x):  B  
Biological Unit 4 (2x):   D 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 19)

Asymmetric Unit (1, 19)
No.NameCountTypeFull Name
1SO419Ligand/IonSULFATE ION
Biological Unit 1 (1, 38)
No.NameCountTypeFull Name
1SO438Ligand/IonSULFATE ION
Biological Unit 2 (1, 10)
No.NameCountTypeFull Name
1SO410Ligand/IonSULFATE ION
Biological Unit 3 (1, 10)
No.NameCountTypeFull Name
1SO410Ligand/IonSULFATE ION
Biological Unit 4 (1, 8)
No.NameCountTypeFull Name
1SO48Ligand/IonSULFATE ION

(-) Sites  (19, 19)

Asymmetric Unit (19, 19)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS A:160 , GLY A:349 , GLY A:350 , GLN A:370 , GLY A:372 , GLY A:373 , HOH A:1094 , HOH A:1135BINDING SITE FOR RESIDUE SO4 A 1001
02AC2SOFTWAREARG A:279 , HIS A:311 , HOH A:1141 , HOH A:1200 , HOH A:1217BINDING SITE FOR RESIDUE SO4 A 1002
03AC3SOFTWARETYR A:31 , HIS A:78 , ARG A:119 , PRO A:289BINDING SITE FOR RESIDUE SO4 A 1003
04AC4SOFTWAREGLY A:148 , VAL A:149 , LYS A:150 , ASP A:151 , ARG A:152BINDING SITE FOR RESIDUE SO4 A 1004
05AC5SOFTWARELYS A:205 , ARG A:208 , VAL A:209 , ARG A:212BINDING SITE FOR RESIDUE SO4 A 1005
06AC6SOFTWAREGLY B:349 , GLY B:350 , GLN B:370 , GLY B:372 , GLY B:373 , HOH B:2076 , HOH B:2077BINDING SITE FOR RESIDUE SO4 B 2001
07AC7SOFTWAREARG B:279 , HIS B:311 , SER B:348 , HOH B:2149 , HOH B:2150 , HOH B:2155BINDING SITE FOR RESIDUE SO4 B 2002
08AC8SOFTWARETYR B:31 , HIS B:78 , ARG B:119 , LEU B:121 , PRO B:289 , HOH B:2082BINDING SITE FOR RESIDUE SO4 B 2003
09AC9SOFTWAREGLY B:148 , VAL B:149 , ARG B:152BINDING SITE FOR RESIDUE SO4 B 2004
10BC1SOFTWARELYS B:205 , ARG B:208 , VAL B:209 , ARG B:212BINDING SITE FOR RESIDUE SO4 B 2005
11BC2SOFTWARELYS D:160 , GLY D:349 , GLY D:350 , GLN D:370 , GLY D:372 , GLY D:373 , HOH D:3025 , HOH D:3108BINDING SITE FOR RESIDUE SO4 D 3001
12BC3SOFTWAREARG D:279 , HIS D:311 , HOH D:3147BINDING SITE FOR RESIDUE SO4 D 3002
13BC4SOFTWARETYR D:31 , HIS D:78 , ARG D:119 , PRO D:289 , HOH D:3129BINDING SITE FOR RESIDUE SO4 D 3003
14BC5SOFTWAREGLY D:148 , VAL D:149 , ARG D:152BINDING SITE FOR RESIDUE SO4 D 3004
15BC6SOFTWARELYS E:160 , GLY E:350 , GLN E:370 , GLY E:372 , GLY E:373 , HOH E:4157 , HOH E:4175BINDING SITE FOR RESIDUE SO4 E 4001
16BC7SOFTWAREARG E:279 , HIS E:311 , SER E:348 , HOH E:4146 , HOH E:4147BINDING SITE FOR RESIDUE SO4 E 4002
17BC8SOFTWARETYR E:31 , HIS E:78 , PRO E:289BINDING SITE FOR RESIDUE SO4 E 4003
18BC9SOFTWAREGLY E:148 , VAL E:149 , LYS E:150 , ASP E:151 , ARG E:152BINDING SITE FOR RESIDUE SO4 E 4004
19CC1SOFTWARELYS E:205 , ARG E:208 , VAL E:209BINDING SITE FOR RESIDUE SO4 E 4005

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2D69)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Lys A:160 -Pro A:161
2Lys B:160 -Pro B:161
3Lys D:160 -Pro D:161
4Lys E:160 -Pro E:161

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2D69)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2D69)

(-) Exons   (0, 0)

(no "Exon" information available for 2D69)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:424
 aligned with RBL_PYRHO | O58677 from UniProtKB/Swiss-Prot  Length:430

    Alignment length:424
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420    
            RBL_PYRHO     1 MMVLRMKVEWYLDFVDLNYEPGRDELIVEYYFEPNGVSPEEAAGRIASESSIGTWTTLWKLPEMAKRSMAKVFYLEKHGEGYIAKIAYPLTLFEEGSLVQLFSAVAGNVFGMKALKNLRLLDFHPPYEYLRHFKGPQFGVQGIREFMGVKDRPLTATVPKPKMGWSVEEYAEIAYELWSGGIDLLKDDENFTSFPFNRFEERVRKLYRVRDRVEAETGETKEYLINITGPVNIMEKRAEMVANEGGQYVMIDIVVAGWSALQYMREVTEDLGLAIHAHRAMHAAFTRNPRHGITMLALAKAARMIGVDQIHTGTAVGKMAGNYEEIKRINDFLLSKWEHIRPVFPVASGGLHPGLMPELIRLFGKDLVIQAGGGVMGHPDGPRAGAKALRDAIDAAIEGVDLDEKAKSSPELKKSLREVGLSKA 424
               SCOP domains d2d69a2 A:1-133 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                      d2d69a1 A:134-424 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                                                                                                                                                                   SCOP domains
               CATH domains -----------2d69A01 A:12-133  [code=3.30.70.150, no name defined]                                                                     2d69A02 A:134-424 Rubisco                                                                                                                                                                                                                                                                           CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeehhhhhh..........eeeeeeeee...hhhhhhhhhhhhh....eee.......hhhhh.eeeeeeee..eeeeeeeehhhhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eee.....hhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhhhhhhh.eeeee...hhhhhh....eehhhhhhhhhhhhh..eee..........hhhhhhhhhhhhhh........eeeee...hhhhhhhhhhhhh...eeehhhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhh..hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2d69 A   1 MMVLRMKVEWYLDFVDLNYEPGRDELIVEYYFEPNGVSPEEAAGRIASESSIGTWTTLWKLPEMAKRSMAKVFYLEKHGEGYIAKIAYPLTLFEEGSLVQLFSAVAGNVFGMKALKNLRLLDFHPPYEYLRHFKGPQFGVQGIREFMGVKDRPLTATVPKPKMGWSVEEYAEIAYELWSGGIDLLKDDENFTSFPFNRFEERVRKLYRVRDRVEAETGETKEYLINITGPVNIMEKRAEMVANEGGQYVMIDIVVAGWSALQYMREVTEDLGLAIHAHRAMHAAFTRNPRHGITMLALAKAARMIGVDQIHTGTAVGKMAGNYEEIKRINDFLLSKWEHIRPVFPVASGGLHPGLMPELIRLFGKDLVIQAGGGVMGHPDGPRAGAKALRDAIDAAIEGVDLDEKAKSSPELKKSLREVGLSKA 424
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420    


Chain B from PDB  Type:PROTEIN  Length:418
 aligned with RBL_PYRHO | O58677 from UniProtKB/Swiss-Prot  Length:430

    Alignment length:418
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417        
            RBL_PYRHO     8 VEWYLDFVDLNYEPGRDELIVEYYFEPNGVSPEEAAGRIASESSIGTWTTLWKLPEMAKRSMAKVFYLEKHGEGYIAKIAYPLTLFEEGSLVQLFSAVAGNVFGMKALKNLRLLDFHPPYEYLRHFKGPQFGVQGIREFMGVKDRPLTATVPKPKMGWSVEEYAEIAYELWSGGIDLLKDDENFTSFPFNRFEERVRKLYRVRDRVEAETGETKEYLINITGPVNIMEKRAEMVANEGGQYVMIDIVVAGWSALQYMREVTEDLGLAIHAHRAMHAAFTRNPRHGITMLALAKAARMIGVDQIHTGTAVGKMAGNYEEIKRINDFLLSKWEHIRPVFPVASGGLHPGLMPELIRLFGKDLVIQAGGGVMGHPDGPRAGAKALRDAIDAAIEGVDLDEKAKSSPELKKSLREVGLSKAK 425
               SCOP domains d2d69b2 B:8-133 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                               d2d69b1 B:134-425 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                                                                                                                                                                    SCOP domains
               CATH domains 2d69B01 B:8-133  [code=3.30.70.150, no name defined]                                                                          2d69B02 B:134-419 Rubisco                                                                                                                                                                                                                                                                     ------ CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh..........eeeeeeeee...hhhhhhhhhhhhh..............hhhhh.eeeeeeee..eeeeeeeehhhhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhhh..eee...........hhhhhhhhhhhhhhhhhhhhh...eee.....hhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhhhhhhh.eeeee...hhhhhh....eehhhhhhhhhhhhh..eee..........hhhhhhhhhhhhhh........eeeee...hhhhhhhhhhhhh...eeehhhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhh.hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2d69 B   8 VEWYLDFVDLNYEPGRDELIVEYYFEPNGVSPEEAAGRIASESSIGTWTTLWKLPEMAKRSMAKVFYLEKHGEGYIAKIAYPLTLFEEGSLVQLFSAVAGNVFGMKALKNLRLLDFHPPYEYLRHFKGPQFGVQGIREFMGVKDRPLTATVPKPKMGWSVEEYAEIAYELWSGGIDLLKDDENFTSFPFNRFEERVRKLYRVRDRVEAETGETKEYLINITGPVNIMEKRAEMVANEGGQYVMIDIVVAGWSALQYMREVTEDLGLAIHAHRAMHAAFTRNPRHGITMLALAKAARMIGVDQIHTGTAVGKMAGNYEEIKRINDFLLSKWEHIRPVFPVASGGLHPGLMPELIRLFGKDLVIQAGGGVMGHPDGPRAGAKALRDAIDAAIEGVDLDEKAKSSPELKKSLREVGLSKAK 425
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417        


Chain D from PDB  Type:PROTEIN  Length:419
 aligned with RBL_PYRHO | O58677 from UniProtKB/Swiss-Prot  Length:430

    Alignment length:419
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410         
            RBL_PYRHO     1 MMVLRMKVEWYLDFVDLNYEPGRDELIVEYYFEPNGVSPEEAAGRIASESSIGTWTTLWKLPEMAKRSMAKVFYLEKHGEGYIAKIAYPLTLFEEGSLVQLFSAVAGNVFGMKALKNLRLLDFHPPYEYLRHFKGPQFGVQGIREFMGVKDRPLTATVPKPKMGWSVEEYAEIAYELWSGGIDLLKDDENFTSFPFNRFEERVRKLYRVRDRVEAETGETKEYLINITGPVNIMEKRAEMVANEGGQYVMIDIVVAGWSALQYMREVTEDLGLAIHAHRAMHAAFTRNPRHGITMLALAKAARMIGVDQIHTGTAVGKMAGNYEEIKRINDFLLSKWEHIRPVFPVASGGLHPGLMPELIRLFGKDLVIQAGGGVMGHPDGPRAGAKALRDAIDAAIEGVDLDEKAKSSPELKKSLREV 419
               SCOP domains d2d69d2 D:1-133 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                      d2d69d1 D:134-419 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                                                                                                                                                              SCOP domains
               CATH domains -----------2d69D01 D:12-133  [code=3.30.70.150, no name defined]                                                                     2d69D02 D:134-419 Rubisco                                                                                                                                                                                                                                                                      CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhh.........eeeeeeeeee...hhhhhhhhhhhhh..............hhhhh.eeeeeeee..eeeeeeeee.hhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhhh..eee...........hhhhhhhhhhhhhhhhhhhhh...eee.....hhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhhhhhhh.eeeee...hhhhhh....eehhhhhhhhhhhhh..eee..........hhhhhhhhhhhhhh........eeee....hhhhhhhhhhhhh...eeehhhhhhhh..hhhhhhhhhhhhhhhhhh..hhhhhhh.hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2d69 D   1 MMVLRMKVEWYLDFVDLNYEPGRDELIVEYYFEPNGVSPEEAAGRIASESSIGTWTTLWKLPEMAKRSMAKVFYLEKHGEGYIAKIAYPLTLFEEGSLVQLFSAVAGNVFGMKALKNLRLLDFHPPYEYLRHFKGPQFGVQGIREFMGVKDRPLTATVPKPKMGWSVEEYAEIAYELWSGGIDLLKDDENFTSFPFNRFEERVRKLYRVRDRVEAETGETKEYLINITGPVNIMEKRAEMVANEGGQYVMIDIVVAGWSALQYMREVTEDLGLAIHAHRAMHAAFTRNPRHGITMLALAKAARMIGVDQIHTGTAVGKMAGNYEEIKRINDFLLSKWEHIRPVFPVASGGLHPGLMPELIRLFGKDLVIQAGGGVMGHPDGPRAGAKALRDAIDAAIEGVDLDEKAKSSPELKKSLREV 419
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410         


Chain E from PDB  Type:PROTEIN  Length:410
 aligned with RBL_PYRHO | O58677 from UniProtKB/Swiss-Prot  Length:430

    Alignment length:410
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418
            RBL_PYRHO     9 EWYLDFVDLNYEPGRDELIVEYYFEPNGVSPEEAAGRIASESSIGTWTTLWKLPEMAKRSMAKVFYLEKHGEGYIAKIAYPLTLFEEGSLVQLFSAVAGNVFGMKALKNLRLLDFHPPYEYLRHFKGPQFGVQGIREFMGVKDRPLTATVPKPKMGWSVEEYAEIAYELWSGGIDLLKDDENFTSFPFNRFEERVRKLYRVRDRVEAETGETKEYLINITGPVNIMEKRAEMVANEGGQYVMIDIVVAGWSALQYMREVTEDLGLAIHAHRAMHAAFTRNPRHGITMLALAKAARMIGVDQIHTGTAVGKMAGNYEEIKRINDFLLSKWEHIRPVFPVASGGLHPGLMPELIRLFGKDLVIQAGGGVMGHPDGPRAGAKALRDAIDAAIEGVDLDEKAKSSPELKKSLRE 418
               SCOP domains d2d69e2 E:9-133 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                              d2d69e1 E:134-418 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                                                                                                                                                             SCOP domains
               CATH domains 2d69E01 E:9-133  [code=3.30.70.150, no name defined]                                                                         2d69E02 E:134-418 Rubisco                                                                                                                                                                                                                                                                     CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh.........eeeeeeeeee...hhhhhhhhhhhhh..............hhhhh.eeeeeeee..eeeeeeeee.hhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhhh..eee...........hhhhhhhhhhhhhhhhhhhhh...eee.....hhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhhhhhhh.eeeee...hhhhhh....eehhhhhhhhhhhhh..eee..........hhhhhhhhhhhhhh........eeee....hhhhhhhhhhhhh...eeehhhhhhhh..hhhhhhhhhhhhhhhhhhh.hhhhhh..hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2d69 E   9 EWYLDFVDLNYEPGRDELIVEYYFEPNGVSPEEAAGRIASESSIGTWTTLWKLPEMAKRSMAKVFYLEKHGEGYIAKIAYPLTLFEEGSLVQLFSAVAGNVFGMKALKNLRLLDFHPPYEYLRHFKGPQFGVQGIREFMGVKDRPLTATVPKPKMGWSVEEYAEIAYELWSGGIDLLKDDENFTSFPFNRFEERVRKLYRVRDRVEAETGETKEYLINITGPVNIMEKRAEMVANEGGQYVMIDIVVAGWSALQYMREVTEDLGLAIHAHRAMHAAFTRNPRHGITMLALAKAARMIGVDQIHTGTAVGKMAGNYEEIKRINDFLLSKWEHIRPVFPVASGGLHPGLMPELIRLFGKDLVIQAGGGVMGHPDGPRAGAKALRDAIDAAIEGVDLDEKAKSSPELKKSLRE 418
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2D69)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)
Chain A,B,D,E   (RBL_PYRHO | O58677)
molecular function
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
    GO:0000287    magnesium ion binding    Interacting selectively and non-covalently with magnesium (Mg) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016984    ribulose-bisphosphate carboxylase activity    Catalysis of the reaction: D-ribulose 1,5-bisphosphate + CO2 + H2O = 2 3-phospho-D-glycerate.
biological process
    GO:0006196    AMP catabolic process    The chemical reactions and pathways resulting in the breakdown of AMP, adenosine monophosphate.
    GO:0015977    carbon fixation    A metabolic process in which carbon (usually derived from carbon dioxide) is incorporated into organic compounds (usually carbohydrates).
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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  RBL_PYRHO | O58677
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 Related Entries

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        RBL_PYRHO | O58677: 2cwx 2cxe

(-) Related Entries Specified in the PDB File

2cwx RELATED ID: PHO001000939.3 RELATED DB: TARGETDB