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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE COMPLEX OF SULFATE ION AND OCTAMERI RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE (RUBISCO) F PYROCOCCUS HORIKOSHII OT3 (FORM-2 CRYSTAL)
Keywords ALPHA/BETA BARREL, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PRO PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURA GENOMICS/PROTEOMICS INITIATIVE, RSGI, LYASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2D69     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   RIBULOSE BISPHOSPHATE CARBOXYLASE  A 424 3351 0
2  Protein   RIBULOSE BISPHOSPHATE CARBOXYLASE  B 418 3301 0
3  Protein   RIBULOSE BISPHOSPHATE CARBOXYLASE  D 419 3319 0
4  Protein   RIBULOSE BISPHOSPHATE CARBOXYLASE  E 410 3246 0
5  Ligand   RIBULOSE BISPHOSPHATE CARBOXYLASE  A 5 0 25
6  Ligand   RIBULOSE BISPHOSPHATE CARBOXYLASE  B 5 0 25
7  Ligand   RIBULOSE BISPHOSPHATE CARBOXYLASE  D 4 0 20
8  Ligand   RIBULOSE BISPHOSPHATE CARBOXYLASE  E 5 0 25
9 Water     750 0 750
total       2440 13217 845

Proteins
Unit 1 MET1 MET2 VAL3 LEU4 ARG5 MET6 LYS7 VAL8 GLU9 TRP10 TYR11 LEU12 ASP13 PHE14 VAL15 ASP16 LEU17 ASN18 TYR19 GLU20 PRO21 GLY22 ARG23 ASP24 GLU25 LEU26 ILE27 VAL28 GLU29 TYR30 TYR31 PHE32 GLU33 PRO34 ASN35 GLY36 VAL37 SER38 PRO39 GLU40 GLU41 ALA42 ALA43 GLY44 ARG45 ILE46 ALA47 SER48 GLU49 SER50 SER51 ILE52 GLY53 THR54 TRP55 THR56 THR57 LEU58 TRP59 LYS60 LEU61 PRO62 GLU63 MET64 ALA65 LYS66 ARG67 SER68 MET69 ALA70 LYS71 VAL72 PHE73 TYR74 LEU75 GLU76 LYS77 HIS78 GLY79 GLU80 GLY81 TYR82 ILE83 ALA84 LYS85 ILE86 ALA87 TYR88 PRO89 LEU90 THR91 LEU92 PHE93 GLU94 GLU95 GLY96 SER97 LEU98 VAL99 GLN100 LEU101 PHE102 SER103 ALA104 VAL105 ALA106 GLY107 ASN108 VAL109 PHE110 GLY111 MET112 LYS113 ALA114 LEU115 LYS116 ASN117 LEU118 ARG119 LEU120 LEU121 ASP122 PHE123 HIS124 PRO125 PRO126 TYR127 GLU128 TYR129 LEU130 ARG131 HIS132 PHE133 LYS134 GLY135 PRO136 GLN137 PHE138 GLY139 VAL140 GLN141 GLY142 ILE143 ARG144 GLU145 PHE146 MET147 GLY148 VAL149 LYS150 ASP151 ARG152 PRO153 LEU154 THR155 ALA156 THR157 VAL158 PRO159 LYS160 PRO161 LYS162 MET163 GLY164 TRP165 SER166 VAL167 GLU168 GLU169 TYR170 ALA171 GLU172 ILE173 ALA174 TYR175 GLU176 LEU177 TRP178 SER179 GLY180 GLY181 ILE182 ASP183 LEU184 LEU185 LYS186 ASP187 ASP188 GLU189 ASN190 PHE191 THR192 SER193 PHE194 PRO195 PHE196 ASN197 ARG198 PHE199 GLU200 GLU201 ARG202 VAL203 ARG204 LYS205 LEU206 TYR207 ARG208 VAL209 ARG210 ASP211 ARG212 VAL213 GLU214 ALA215 GLU216 THR217 GLY218 GLU219 THR220 LYS221 GLU222 TYR223 LEU224 ILE225 ASN226 ILE227 THR228 GLY229 PRO230 VAL231 ASN232 ILE233 MET234 GLU235 LYS236 ARG237 ALA238 GLU239 MET240 VAL241 ALA242 ASN243 GLU244 GLY245 GLY246 GLN247 TYR248 VAL249 MET250 ILE251 ASP252 ILE253 VAL254 VAL255 ALA256 GLY257 TRP258 SER259 ALA260 LEU261 GLN262 TYR263 MET264 ARG265 GLU266 VAL267 THR268 GLU269 ASP270 LEU271 GLY272 LEU273 ALA274 ILE275 HIS276 ALA277 HIS278 ARG279 ALA280 MET281 HIS282 ALA283 ALA284 PHE285 THR286 ARG287 ASN288 PRO289 ARG290 HIS291 GLY292 ILE293 THR294 MET295 LEU296 ALA297 LEU298 ALA299 LYS300 ALA301 ALA302 ARG303 MET304 ILE305 GLY306 VAL307 ASP308 GLN309 ILE310 HIS311 THR312 GLY313 THR314 ALA315 VAL316 GLY317 LYS318 MET319 ALA320 GLY321 ASN322 TYR323 GLU324 GLU325 ILE326 LYS327 ARG328 ILE329 ASN330 ASP331 PHE332 LEU333 LEU334 SER335 LYS336 TRP337 GLU338 HIS339 ILE340 ARG341 PRO342 VAL343 PHE344 PRO345 VAL346 ALA347 SER348 GLY349 GLY350 LEU351 HIS352 PRO353 GLY354 LEU355 MET356 PRO357 GLU358 LEU359 ILE360 ARG361 LEU362 PHE363 GLY364 LYS365 ASP366 LEU367 VAL368 ILE369 GLN370 ALA371 GLY372 GLY373 GLY374 VAL375 MET376 GLY377 HIS378 PRO379 ASP380 GLY381 PRO382 ARG383 ALA384 GLY385 ALA386 LYS387 ALA388 LEU389 ARG390 ASP391 ALA392 ILE393 ASP394 ALA395 ALA396 ILE397 GLU398 GLY399 VAL400 ASP401 LEU402 ASP403 GLU404 LYS405 ALA406 LYS407 SER408 SER409 PRO410 GLU411 LEU412 LYS413 LYS414 SER415 LEU416 ARG417 GLU418 VAL419 GLY420 LEU421 SER422 LYS423 ALA424
Unit 2 VAL8 GLU9 TRP10 TYR11 LEU12 ASP13 PHE14 VAL15 ASP16 LEU17 ASN18 TYR19 GLU20 PRO21 GLY22 ARG23 ASP24 GLU25 LEU26 ILE27 VAL28 GLU29 TYR30 TYR31 PHE32 GLU33 PRO34 ASN35 GLY36 VAL37 SER38 PRO39 GLU40 GLU41 ALA42 ALA43 GLY44 ARG45 ILE46 ALA47 SER48 GLU49 SER50 SER51 ILE52 GLY53 THR54 TRP55 THR56 THR57 LEU58 TRP59 LYS60 LEU61 PRO62 GLU63 MET64 ALA65 LYS66 ARG67 SER68 MET69 ALA70 LYS71 VAL72 PHE73 TYR74 LEU75 GLU76 LYS77 HIS78 GLY79 GLU80 GLY81 TYR82 ILE83 ALA84 LYS85 ILE86 ALA87 TYR88 PRO89 LEU90 THR91 LEU92 PHE93 GLU94 GLU95 GLY96 SER97 LEU98 VAL99 GLN100 LEU101 PHE102 SER103 ALA104 VAL105 ALA106 GLY107 ASN108 VAL109 PHE110 GLY111 MET112 LYS113 ALA114 LEU115 LYS116 ASN117 LEU118 ARG119 LEU120 LEU121 ASP122 PHE123 HIS124 PRO125 PRO126 TYR127 GLU128 TYR129 LEU130 ARG131 HIS132 PHE133 LYS134 GLY135 PRO136 GLN137 PHE138 GLY139 VAL140 GLN141 GLY142 ILE143 ARG144 GLU145 PHE146 MET147 GLY148 VAL149 LYS150 ASP151 ARG152 PRO153 LEU154 THR155 ALA156 THR157 VAL158 PRO159 LYS160 PRO161 LYS162 MET163 GLY164 TRP165 SER166 VAL167 GLU168 GLU169 TYR170 ALA171 GLU172 ILE173 ALA174 TYR175 GLU176 LEU177 TRP178 SER179 GLY180 GLY181 ILE182 ASP183 LEU184 LEU185 LYS186 ASP187 ASP188 GLU189 ASN190 PHE191 THR192 SER193 PHE194 PRO195 PHE196 ASN197 ARG198 PHE199 GLU200 GLU201 ARG202 VAL203 ARG204 LYS205 LEU206 TYR207 ARG208 VAL209 ARG210 ASP211 ARG212 VAL213 GLU214 ALA215 GLU216 THR217 GLY218 GLU219 THR220 LYS221 GLU222 TYR223 LEU224 ILE225 ASN226 ILE227 THR228 GLY229 PRO230 VAL231 ASN232 ILE233 MET234 GLU235 LYS236 ARG237 ALA238 GLU239 MET240 VAL241 ALA242 ASN243 GLU244 GLY245 GLY246 GLN247 TYR248 VAL249 MET250 ILE251 ASP252 ILE253 VAL254 VAL255 ALA256 GLY257 TRP258 SER259 ALA260 LEU261 GLN262 TYR263 MET264 ARG265 GLU266 VAL267 THR268 GLU269 ASP270 LEU271 GLY272 LEU273 ALA274 ILE275 HIS276 ALA277 HIS278 ARG279 ALA280 MET281 HIS282 ALA283 ALA284 PHE285 THR286 ARG287 ASN288 PRO289 ARG290 HIS291 GLY292 ILE293 THR294 MET295 LEU296 ALA297 LEU298 ALA299 LYS300 ALA301 ALA302 ARG303 MET304 ILE305 GLY306 VAL307 ASP308 GLN309 ILE310 HIS311 THR312 GLY313 THR314 ALA315 VAL316 GLY317 LYS318 MET319 ALA320 GLY321 ASN322 TYR323 GLU324 GLU325 ILE326 LYS327 ARG328 ILE329 ASN330 ASP331 PHE332 LEU333 LEU334 SER335 LYS336 TRP337 GLU338 HIS339 ILE340 ARG341 PRO342 VAL343 PHE344 PRO345 VAL346 ALA347 SER348 GLY349 GLY350 LEU351 HIS352 PRO353 GLY354 LEU355 MET356 PRO357 GLU358 LEU359 ILE360 ARG361 LEU362 PHE363 GLY364 LYS365 ASP366 LEU367 VAL368 ILE369 GLN370 ALA371 GLY372 GLY373 GLY374 VAL375 MET376 GLY377 HIS378 PRO379 ASP380 GLY381 PRO382 ARG383 ALA384 GLY385 ALA386 LYS387 ALA388 LEU389 ARG390 ASP391 ALA392 ILE393 ASP394 ALA395 ALA396 ILE397 GLU398 GLY399 VAL400 ASP401 LEU402 ASP403 GLU404 LYS405 ALA406 LYS407 SER408 SER409 PRO410 GLU411 LEU412 LYS413 LYS414 SER415 LEU416 ARG417 GLU418 VAL419 GLY420 LEU421 SER422 LYS423 ALA424 LYS425
Unit 3 MET1 MET2 VAL3 LEU4 ARG5 MET6 LYS7 VAL8 GLU9 TRP10 TYR11 LEU12 ASP13 PHE14 VAL15 ASP16 LEU17 ASN18 TYR19 GLU20 PRO21 GLY22 ARG23 ASP24 GLU25 LEU26 ILE27 VAL28 GLU29 TYR30 TYR31 PHE32 GLU33 PRO34 ASN35 GLY36 VAL37 SER38 PRO39 GLU40 GLU41 ALA42 ALA43 GLY44 ARG45 ILE46 ALA47 SER48 GLU49 SER50 SER51 ILE52 GLY53 THR54 TRP55 THR56 THR57 LEU58 TRP59 LYS60 LEU61 PRO62 GLU63 MET64 ALA65 LYS66 ARG67 SER68 MET69 ALA70 LYS71 VAL72 PHE73 TYR74 LEU75 GLU76 LYS77 HIS78 GLY79 GLU80 GLY81 TYR82 ILE83 ALA84 LYS85 ILE86 ALA87 TYR88 PRO89 LEU90 THR91 LEU92 PHE93 GLU94 GLU95 GLY96 SER97 LEU98 VAL99 GLN100 LEU101 PHE102 SER103 ALA104 VAL105 ALA106 GLY107 ASN108 VAL109 PHE110 GLY111 MET112 LYS113 ALA114 LEU115 LYS116 ASN117 LEU118 ARG119 LEU120 LEU121 ASP122 PHE123 HIS124 PRO125 PRO126 TYR127 GLU128 TYR129 LEU130 ARG131 HIS132 PHE133 LYS134 GLY135 PRO136 GLN137 PHE138 GLY139 VAL140 GLN141 GLY142 ILE143 ARG144 GLU145 PHE146 MET147 GLY148 VAL149 LYS150 ASP151 ARG152 PRO153 LEU154 THR155 ALA156 THR157 VAL158 PRO159 LYS160 PRO161 LYS162 MET163 GLY164 TRP165 SER166 VAL167 GLU168 GLU169 TYR170 ALA171 GLU172 ILE173 ALA174 TYR175 GLU176 LEU177 TRP178 SER179 GLY180 GLY181 ILE182 ASP183 LEU184 LEU185 LYS186 ASP187 ASP188 GLU189 ASN190 PHE191 THR192 SER193 PHE194 PRO195 PHE196 ASN197 ARG198 PHE199 GLU200 GLU201 ARG202 VAL203 ARG204 LYS205 LEU206 TYR207 ARG208 VAL209 ARG210 ASP211 ARG212 VAL213 GLU214 ALA215 GLU216 THR217 GLY218 GLU219 THR220 LYS221 GLU222 TYR223 LEU224 ILE225 ASN226 ILE227 THR228 GLY229 PRO230 VAL231 ASN232 ILE233 MET234 GLU235 LYS236 ARG237 ALA238 GLU239 MET240 VAL241 ALA242 ASN243 GLU244 GLY245 GLY246 GLN247 TYR248 VAL249 MET250 ILE251 ASP252 ILE253 VAL254 VAL255 ALA256 GLY257 TRP258 SER259 ALA260 LEU261 GLN262 TYR263 MET264 ARG265 GLU266 VAL267 THR268 GLU269 ASP270 LEU271 GLY272 LEU273 ALA274 ILE275 HIS276 ALA277 HIS278 ARG279 ALA280 MET281 HIS282 ALA283 ALA284 PHE285 THR286 ARG287 ASN288 PRO289 ARG290 HIS291 GLY292 ILE293 THR294 MET295 LEU296 ALA297 LEU298 ALA299 LYS300 ALA301 ALA302 ARG303 MET304 ILE305 GLY306 VAL307 ASP308 GLN309 ILE310 HIS311 THR312 GLY313 THR314 ALA315 VAL316 GLY317 LYS318 MET319 ALA320 GLY321 ASN322 TYR323 GLU324 GLU325 ILE326 LYS327 ARG328 ILE329 ASN330 ASP331 PHE332 LEU333 LEU334 SER335 LYS336 TRP337 GLU338 HIS339 ILE340 ARG341 PRO342 VAL343 PHE344 PRO345 VAL346 ALA347 SER348 GLY349 GLY350 LEU351 HIS352 PRO353 GLY354 LEU355 MET356 PRO357 GLU358 LEU359 ILE360 ARG361 LEU362 PHE363 GLY364 LYS365 ASP366 LEU367 VAL368 ILE369 GLN370 ALA371 GLY372 GLY373 GLY374 VAL375 MET376 GLY377 HIS378 PRO379 ASP380 GLY381 PRO382 ARG383 ALA384 GLY385 ALA386 LYS387 ALA388 LEU389 ARG390 ASP391 ALA392 ILE393 ASP394 ALA395 ALA396 ILE397 GLU398 GLY399 VAL400 ASP401 LEU402 ASP403 GLU404 LYS405 ALA406 LYS407 SER408 SER409 PRO410 GLU411 LEU412 LYS413 LYS414 SER415 LEU416 ARG417 GLU418 VAL419
Unit 4 GLU9 TRP10 TYR11 LEU12 ASP13 PHE14 VAL15 ASP16 LEU17 ASN18 TYR19 GLU20 PRO21 GLY22 ARG23 ASP24 GLU25 LEU26 ILE27 VAL28 GLU29 TYR30 TYR31 PHE32 GLU33 PRO34 ASN35 GLY36 VAL37 SER38 PRO39 GLU40 GLU41 ALA42 ALA43 GLY44 ARG45 ILE46 ALA47 SER48 GLU49 SER50 SER51 ILE52 GLY53 THR54 TRP55 THR56 THR57 LEU58 TRP59 LYS60 LEU61 PRO62 GLU63 MET64 ALA65 LYS66 ARG67 SER68 MET69 ALA70 LYS71 VAL72 PHE73 TYR74 LEU75 GLU76 LYS77 HIS78 GLY79 GLU80 GLY81 TYR82 ILE83 ALA84 LYS85 ILE86 ALA87 TYR88 PRO89 LEU90 THR91 LEU92 PHE93 GLU94 GLU95 GLY96 SER97 LEU98 VAL99 GLN100 LEU101 PHE102 SER103 ALA104 VAL105 ALA106 GLY107 ASN108 VAL109 PHE110 GLY111 MET112 LYS113 ALA114 LEU115 LYS116 ASN117 LEU118 ARG119 LEU120 LEU121 ASP122 PHE123 HIS124 PRO125 PRO126 TYR127 GLU128 TYR129 LEU130 ARG131 HIS132 PHE133 LYS134 GLY135 PRO136 GLN137 PHE138 GLY139 VAL140 GLN141 GLY142 ILE143 ARG144 GLU145 PHE146 MET147 GLY148 VAL149 LYS150 ASP151 ARG152 PRO153 LEU154 THR155 ALA156 THR157 VAL158 PRO159 LYS160 PRO161 LYS162 MET163 GLY164 TRP165 SER166 VAL167 GLU168 GLU169 TYR170 ALA171 GLU172 ILE173 ALA174 TYR175 GLU176 LEU177 TRP178 SER179 GLY180 GLY181 ILE182 ASP183 LEU184 LEU185 LYS186 ASP187 ASP188 GLU189 ASN190 PHE191 THR192 SER193 PHE194 PRO195 PHE196 ASN197 ARG198 PHE199 GLU200 GLU201 ARG202 VAL203 ARG204 LYS205 LEU206 TYR207 ARG208 VAL209 ARG210 ASP211 ARG212 VAL213 GLU214 ALA215 GLU216 THR217 GLY218 GLU219 THR220 LYS221 GLU222 TYR223 LEU224 ILE225 ASN226 ILE227 THR228 GLY229 PRO230 VAL231 ASN232 ILE233 MET234 GLU235 LYS236 ARG237 ALA238 GLU239 MET240 VAL241 ALA242 ASN243 GLU244 GLY245 GLY246 GLN247 TYR248 VAL249 MET250 ILE251 ASP252 ILE253 VAL254 VAL255 ALA256 GLY257 TRP258 SER259 ALA260 LEU261 GLN262 TYR263 MET264 ARG265 GLU266 VAL267 THR268 GLU269 ASP270 LEU271 GLY272 LEU273 ALA274 ILE275 HIS276 ALA277 HIS278 ARG279 ALA280 MET281 HIS282 ALA283 ALA284 PHE285 THR286 ARG287 ASN288 PRO289 ARG290 HIS291 GLY292 ILE293 THR294 MET295 LEU296 ALA297 LEU298 ALA299 LYS300 ALA301 ALA302 ARG303 MET304 ILE305 GLY306 VAL307 ASP308 GLN309 ILE310 HIS311 THR312 GLY313 THR314 ALA315 VAL316 GLY317 LYS318 MET319 ALA320 GLY321 ASN322 TYR323 GLU324 GLU325 ILE326 LYS327 ARG328 ILE329 ASN330 ASP331 PHE332 LEU333 LEU334 SER335 LYS336 TRP337 GLU338 HIS339 ILE340 ARG341 PRO342 VAL343 PHE344 PRO345 VAL346 ALA347 SER348 GLY349 GLY350 LEU351 HIS352 PRO353 GLY354 LEU355 MET356 PRO357 GLU358 LEU359 ILE360 ARG361 LEU362 PHE363 GLY364 LYS365 ASP366 LEU367 VAL368 ILE369 GLN370 ALA371 GLY372 GLY373 GLY374 VAL375 MET376 GLY377 HIS378 PRO379 ASP380 GLY381 PRO382 ARG383 ALA384 GLY385 ALA386 LYS387 ALA388 LEU389 ARG390 ASP391 ALA392 ILE393 ASP394 ALA395 ALA396 ILE397 GLU398 GLY399 VAL400 ASP401 LEU402 ASP403 GLU404 LYS405 ALA406 LYS407 SER408 SER409 PRO410 GLU411 LEU412 LYS413 LYS414 SER415 LEU416 ARG417 GLU418

Ligands
Unit 5 SO41001 SO41002 SO41003 SO41004 SO41005
Unit 6 SO42001 SO42002 SO42003 SO42004 SO42005
Unit 7 SO43001 SO43002 SO43003 SO43004
Unit 8 SO44001 SO44002 SO44003 SO44004 SO44005

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany