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(-) Description

Title :  CRYSTAL STRUCTURE OF ADP-RIBOSYLGLYCOHYDROLASE-RELATED PROTEIN FROM THERMUS THERMOPHILUS HB8
 
Authors :  A. Ebihara, S. Yokoyama, S. Kuramitsu, Riken Structural Genomics/P Initiative (Rsgi)
Date :  18 Jun 05  (Deposition) - 18 Dec 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym./Biol. Unit :  A
Keywords :  All Alpha Protein, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Ebihara, S. Yokoyama, S. Kuramitsu
Crystal Structure Of Adp-Ribosylglycohydrolase-Related Protein From Thermus Thermophilus Hb8
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ADP-RIBOSYLGLYCOHYDROLASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET11A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8
    Synonym: ADP-RIBOSYLGLYCOHYDROLASE-RELATED PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2CWC)

(-) Sites  (0, 0)

(no "Site" information available for 2CWC)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2CWC)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2CWC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2CWC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2CWC)

(-) Exons   (0, 0)

(no "Exon" information available for 2CWC)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:284
 aligned with Q5SMG9_THET8 | Q5SMG9 from UniProtKB/TrEMBL  Length:303

    Alignment length:296
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294      
         Q5SMG9_THET8     5 KERQDRRLGAFLGLAVGDALGAQVEGLPKGTFPEVREMKGGGPHRLPPGFWTDDTSQALCLAESLLQRGFDPKDQMDRYLRWYREGYRSATGVCFGLGHATRRALERYAATGDPYAGDEAGAGNGPLMRLAPLVLAYENHPDLLSLARRAARTTHGAREALEATEVLAWLLREALRGAPKEALLALEPFRGADLHPALRRVVEGGFWEAPEEGPGYAPGTLAAALWAFARGRDFEEGMRLAVNLGGDADTVGAVYGQLAGAYYGLGAIPGRWLRALHLREEMEALALALYRMSMAS 300
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhh............................hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh..------------hhhhhhhhhhhhh...........hhhhhhhhhhhhhhh...hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh....hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhh.hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2cwc A   5 KERQDRRLGAFLGLAVGDALGAQVEGLPKGTFPEVREMKGGGPHRLPPGFWTDDTSQALCLAESLLQRGFDPKDQMDRYLRWYREGY------------ATRRALERYAATGDPYAGDEAGAGNGPLMRLAPLVLAYENHPDLLSLARRAARTTHGAREALEATEVLAWLLREALRGAPKEALLALEPFRGADLHPALRRVVEGGFWEAPEEGPGYAPGTLAAALWAFARGRDFEEGMRLAVNLGGDADTVGAVYGQLAGAYYGLGAIPGRWLRALHLREEMEALALALYRMSMAS 300
                                    14        24        34        44        54        64        74        84      |  -       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294      
                                                                                                                 91          104
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2CWC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2CWC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2CWC)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q5SMG9_THET8 | Q5SMG9)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q5SMG9_THET8 | Q5SMG9: 2yzv 2yzw

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