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(-) Description

Title :  ADP-RIBOSYLGLYCOHYDROLASE-RELATED PROTEIN COMPLEX
 
Authors :  A. Ebihara, M. Manzoku, S. Yokoyama, S. Kuramitsu, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  06 May 07  (Deposition) - 06 Nov 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A
Keywords :  All Alpha Protein, Hydrolase, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Ebihara, M. Manzoku, S. Yokoyama, S. Kuramitsu
Adp-Ribosylglycohydrolase-Related Protein Complex
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ADP-RIBOSYLGLYCOHYDROLASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-11A
    Expression System Strain: ROSETTA(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8
    Synonym: ADP-RIBOSYLGLYCOHYDROLASE-RELATED PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1GD32Ligand/IonGADOLINIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:29 , ASP A:251 , ASP A:253 , THR A:254 , HOH A:507 , HOH A:535BINDING SITE FOR RESIDUE GD3 A 501
2AC2SOFTWARETHR A:56 , ASP A:57 , ASP A:58 , ASP A:253 , HOH A:505 , HOH A:507BINDING SITE FOR RESIDUE GD3 A 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2YZW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2YZW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2YZW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2YZW)

(-) Exons   (0, 0)

(no "Exon" information available for 2YZW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:283
 aligned with Q5SMG9_THET8 | Q5SMG9 from UniProtKB/TrEMBL  Length:303

    Alignment length:295
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293     
         Q5SMG9_THET8     4 LKERQDRRLGAFLGLAVGDALGAQVEGLPKGTFPEVREMKGGGPHRLPPGFWTDDTSQALCLAESLLQRGFDPKDQMDRYLRWYREGYRSATGVCFGLGHATRRALERYAATGDPYAGDEAGAGNGPLMRLAPLVLAYENHPDLLSLARRAARTTHGAREALEATEVLAWLLREALRGAPKEALLALEPFRGADLHPALRRVVEGGFWEAPEEGPGYAPGTLAAALWAFARGRDFEEGMRLAVNLGGDADTVGAVYGQLAGAYYGLGAIPGRWLRALHLREEMEALALALYRMSM 298
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------ADP_ribosyl_GH-2yzwA01 A:13-276                                                                                                                                                                                                                                         ---------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhh.................hhhhh......hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh..------------hhhhhhhhhhhhh...........hhhhhhhhhhhhhhh...hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh....hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhh.hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yzw A   4 LKERQDRRLGAFLGLAVGDALGAQVEGLPKGTFPEVREMKGGGPHRLPPGFWTDDTSQALCLAESLLQRGFDPKDQMDRYLRWYREGY------------ATRRALERYAATGDPYAGDEAGAGNGPLMRLAPLVLAYENHPDLLSLARRAARTTHGAREALEATEVLAWLLREALRGAPKEALLALEPFRGADLHPALRRVVEGGFWEAPEEGPGYAPGTLAAALWAFARGRDFEEGMRLAVNLGGDADTVGAVYGQLAGAYYGLGAIPGRWLRALHLREEMEALALALYRMSM 298
                                    13        23        33        43        53        63        73        83       | -         -|      113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293     
                                                                                                                  91          104
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2YZW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2YZW)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: ADP_ribosyl_GH] (7)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q5SMG9_THET8 | Q5SMG9)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q5SMG9_THET8 | Q5SMG9: 2cwc 2yzv

(-) Related Entries Specified in the PDB File

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