2CME - JenaLib

Asym.Unit - manually (Jmol Viewer)

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   THE CRYSTAL STRUCTURE OF SARS CORONAVIRUS ORF-9B PROTEIN

Authors :   C. Meier, A. R. Aricescu, R. Assenberg, R. T. Aplin, R. J. C. Gilbert, J. M. Grimes, D. I. Stuart

Date :   06 May 06 (Deposition) - 19 Jul 06 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.80

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)
Biol. Unit 3: E,F  (1x)
Biol. Unit 4: G,H  (1x)

Keywords :   Alternative Open Reading Frame, Lipid-Binding, Virus Assembly, Hypothetical Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Meier, A. R. Aricescu, R. Assenberg, R. T. Aplin, R. J. C. Gilbert, J. M. Grimes, D. I. Stuart
The Crystal Structure Of Orf-9B, A Lipid Binding Protein From The Sars Coronavirus.
Structure V. 14 1157 2006
PubMed-ID: 16843897 | Reference-DOI: 10.1016/J.STR.2006.05.012

Molecule 1 - HYPOTHETICAL PROTEIN 5
	Cell Line	:	VERO E6
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	GATEWAY
	Expression System Strain	:	ROSETTA PLYSS
	Expression System Taxid	:	562
	Expression System Vector	:	PDEST-14
	Organism Common	:	SARS
	Organism Scientific	:	HUMAN SARS CORONAVIRUS
	Organism Taxid	:	227859
	Strain	:	HKU-39849
	Synonym	:	ORF-9B, ORF13

Molecule 2 - HYPOTHETICAL PROTEIN 5
	Cell Line	:	VERO E6
	Chains	:	B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	GATEWAY
	Expression System Strain	:	ROSETTA PLYSS
	Expression System Taxid	:	562
	Expression System Vector	:	PDEST-14
	Organism Common	:	SARS
	Organism Scientific	:	HUMAN SARS CORONAVIRUS
	Organism Taxid	:	227859
	Other Details	:	CONTAINS LIPID MOLECULE (MODELLED AS DECANE, RESIDUE NAME D10)
	Strain	:	HKU-39849
	Synonym	:	ORF-9B, ORF13

Molecule 3 - HYPOTHETICAL PROTEIN 5
	Cell Line	:	VERO E6
	Chains	:	E, G
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	GATEWAY
	Expression System Strain	:	ROSETTA PLYSS
	Expression System Taxid	:	562
	Expression System Vector	:	PDEST-14
	Organism Common	:	SARS
	Organism Scientific	:	HUMAN SARS CORONAVIRUS
	Organism Taxid	:	227859
	Strain	:	HKU-39849
	Synonym	:	ORF-9B, ORF13

Molecule 4 - HYPOTHETICAL PROTEIN 5
	Cell Line	:	VERO E6
	Chains	:	C, D, F, H
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	GATEWAY
	Expression System Strain	:	ROSETTA PLYSS
	Expression System Taxid	:	562
	Expression System Vector	:	PDEST-14
	Organism Common	:	SARS
	Organism Scientific	:	HUMAN SARS CORONAVIRUS
	Organism Taxid	:	227859
	Other Details	:	CONTAINS LIPID MOLECULE (MODELLED AS DECANE, RESIDUE NAME D10)
	Strain	:	HKU-39849
	Synonym	:	ORF-9B, ORF13

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D
Biological Unit 3 (1x)	:					E	F
Biological Unit 4 (1x)	:							G	H

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 4)

No.	Name	Count	Type	Full Name
1	D10	4	Ligand/Ion	DECANE

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	D10	1	Ligand/Ion	DECANE

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	D10	1	Ligand/Ion	DECANE

Biological Unit 3 (1, 1)

No.	Name	Count	Type	Full Name
1	D10	1	Ligand/Ion	DECANE

Biological Unit 4 (1, 1)

No.	Name	Count	Type	Full Name
1	D10	1	Ligand/Ion	DECANE

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LEU B:53 , VAL B:77	BINDING SITE FOR RESIDUE D10 B1099
2	AC2	SOFTWARE	VAL E:95 , VAL F:77	BINDING SITE FOR RESIDUE D10 F1099
3	AC3	SOFTWARE	LEU H:53	BINDING SITE FOR RESIDUE D10 H1099

(no "SS Bond" information available for 2CME)

Asymmetric Unit

No.	Residues
1	Pro A:10	-	Pro A:11
2	Pro F:10	-	Pro F:11
3	Pro H:10	-	Pro H:11

Asymmetric Unit (1, 8)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_ORF9B_CVHSA_001 *	A	58	V	ORF9B_CVHSA	---	---	A/B/C/D/E/F/G/H	A	58	V
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (1, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_ORF9B_CVHSA_001 *	A	58	V	ORF9B_CVHSA	---	---	A/B	A	58	V
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (1, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_ORF9B_CVHSA_001 *	A	58	V	ORF9B_CVHSA	---	---	C/D	A	58	V
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 3 (1, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_ORF9B_CVHSA_001 *	A	58	V	ORF9B_CVHSA	---	---	E/F	A	58	V
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 4 (1, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_ORF9B_CVHSA_001 *	A	58	V	ORF9B_CVHSA	---	---	G/H	A	58	V
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(no "PROSITE Motif" information available for 2CME)

(no "Exon" information available for 2CME)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:78
 aligned with ORF9B_CVHSA | P59636 from UniProtKB/Swiss-Prot  Length:98

    Alignment length:90
                                    18        28        38        48        58        68        78        88        98
           ORF9B_CVHSA    9 VPPALHLVDPQIQLTITRMEDAMGQGQNSADPKVYPIILRLGSQLSLSMARRNLDSLEARAFQSTPIVVQMTKLATTEELPDEFVVVTAK 98
               SCOP domains d2cmea1 A:9-98 Hy            pothetical protein 5 (ORF-9b)                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeeeeeeee..------------................eeeeee.............ee.........hhhhh.......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------V---------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                  2cme A  9 VPPALHLVDPQIQLTIT------------ADPKVYPIILRLGSNLSLSMARRNLDSLEARAFQSTPIVVQMTKLATTEELPDEFVVVTAK 98
                                    18      |  -        38        48        58        68        78        88        98
                                           25           38

Chain B from PDB  Type:PROTEIN  Length:79
 aligned with ORF9B_CVHSA | P59636 from UniProtKB/Swiss-Prot  Length:98

    Alignment length:90
                                    18        28        38        48        58        68        78        88        98
           ORF9B_CVHSA    9 VPPALHLVDPQIQLTITRMEDAMGQGQNSADPKVYPIILRLGSQLSLSMARRNLDSLEARAFQSTPIVVQMTKLATTEELPDEFVVVTAK 98
               SCOP domains d2cmeb1 B:9-98 Hyp           othetical protein 5 (ORF-9b)                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeeeeeeeee..-----------....eeeeee................................ee..hhhhh..eeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------V---------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                  2cme B  9 VPPALHLVDPQIQLTITR-----------ADPKVYPIILRLGSNLSLSMARRNLDSLEARAFQSTPIVVQMTKLATTEELPDEFVVVTAK 98
                                    18       | -        38        48        58        68        78        88        98
                                            26          38

Chain B from PDB  Type:PROTEIN  Length:79
 aligned with Q19QV9_CVHSA | Q19QV9 from UniProtKB/TrEMBL  Length:98

    Alignment length:90
                                    18        28        38        48        58        68        78        88        98
          Q19QV9_CVHSA    9 VPPALHLVDPQIQLTITRMEDAMGQGQNSADPKVYPIILRLGSQLSLSMARRNLDSLEARAFQSTPIVVQMTKLATTEELPDEFVVVTAK 98
               SCOP domains d2cmeb1 B:9-98 Hyp           othetical protein 5 (ORF-9b)                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeeeeeeeee..-----------....eeeeee................................ee..hhhhh..eeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------V---------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                  2cme B  9 VPPALHLVDPQIQLTITR-----------ADPKVYPIILRLGSNLSLSMARRNLDSLEARAFQSTPIVVQMTKLATTEELPDEFVVVTAK 98
                                    18       | -        38        48        58        68        78        88        98
                                            26          38

Chain C from PDB  Type:PROTEIN  Length:76
 aligned with ORF9B_CVHSA | P59636 from UniProtKB/Swiss-Prot  Length:98

    Alignment length:89
                                    19        29        39        49        59        69        79        89         
           ORF9B_CVHSA   10 PPALHLVDPQIQLTITRMEDAMGQGQNSADPKVYPIILRLGSQLSLSMARRNLDSLEARAFQSTPIVVQMTKLATTEELPDEFVVVTAK 98
               SCOP domains d2cmec_ C: Hypot             hetical protein 5 (ORF-9b)                                   SCOP domains
               CATH domains ----------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeeee.-------------...eeeeee......eeeeeee.........eeeee.....ee.........eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------V---------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------- Transcript
                  2cme C 10 PPALHLVDPQIQLTIT-------------DPKVYPIILRLGSNLSLSMARRNLDSLEARAFQSTPIVVQMTKLATTEELPDEFVVVTAK 98
                                    19     |   -        39        49        59        69        79        89         
                                          25            39

Chain D from PDB  Type:PROTEIN  Length:76
 aligned with ORF9B_CVHSA | P59636 from UniProtKB/Swiss-Prot  Length:98

    Alignment length:89
                                    19        29        39        49        59        69        79        89         
           ORF9B_CVHSA   10 PPALHLVDPQIQLTITRMEDAMGQGQNSADPKVYPIILRLGSQLSLSMARRNLDSLEARAFQSTPIVVQMTKLATTEELPDEFVVVTAK 98
               SCOP domains d2cmed_ D: Hypot             hetical protein 5 (ORF-9b)                                   SCOP domains
               CATH domains ----------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee...eeeee.-------------...ee.eee......eeeeeee.........eeeee.....ee..hhhhh..eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------V---------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------- Transcript
                  2cme D 10 PPALHLVDPQIQLTIT-------------DPKVYPIILRLGSNLSLSMARRNLDSLEARAFQSTPIVVQMTKLATTEELPDEFVVVTAK 98
                                    19     |   -        39        49        59        69        79        89         
                                          25            39

Chain E from PDB  Type:PROTEIN  Length:77
 aligned with ORF9B_CVHSA | P59636 from UniProtKB/Swiss-Prot  Length:98

    Alignment length:90
                                    18        28        38        48        58        68        78        88        98
           ORF9B_CVHSA    9 VPPALHLVDPQIQLTITRMEDAMGQGQNSADPKVYPIILRLGSQLSLSMARRNLDSLEARAFQSTPIVVQMTKLATTEELPDEFVVVTAK 98
               SCOP domains d2cmee1 E:9-98 Hy             pothetical protein 5 (ORF-9b)                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeeeeeeeee.-------------...eeeeee......eeeeee.............ee.....ee..hhhhh..eeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------V---------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                  2cme E  9 VPPALHLVDPQIQLTIT-------------DPKVYPIILRLGSNLSLSMARRNLDSLEARAFQSTPIVVQMTKLATTEELPDEFVVVTAK 98
                                    18      |  -         -|       48        58        68        78        88        98
                                           25            39

Chain E from PDB  Type:PROTEIN  Length:77
 aligned with Q19QV9_CVHSA | Q19QV9 from UniProtKB/TrEMBL  Length:98

    Alignment length:90
                                    18        28        38        48        58        68        78        88        98
          Q19QV9_CVHSA    9 VPPALHLVDPQIQLTITRMEDAMGQGQNSADPKVYPIILRLGSQLSLSMARRNLDSLEARAFQSTPIVVQMTKLATTEELPDEFVVVTAK 98
               SCOP domains d2cmee1 E:9-98 Hy             pothetical protein 5 (ORF-9b)                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeeeeeeeee.-------------...eeeeee......eeeeee.............ee.....ee..hhhhh..eeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------V---------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                  2cme E  9 VPPALHLVDPQIQLTIT-------------DPKVYPIILRLGSNLSLSMARRNLDSLEARAFQSTPIVVQMTKLATTEELPDEFVVVTAK 98
                                    18      |  -         -|       48        58        68        78        88        98
                                           25            39

Chain F from PDB  Type:PROTEIN  Length:76
 aligned with ORF9B_CVHSA | P59636 from UniProtKB/Swiss-Prot  Length:98

    Alignment length:89
                                    19        29        39        49        59        69        79        89         
           ORF9B_CVHSA   10 PPALHLVDPQIQLTITRMEDAMGQGQNSADPKVYPIILRLGSQLSLSMARRNLDSLEARAFQSTPIVVQMTKLATTEELPDEFVVVTAK 98
               SCOP domains d2cmef_ F: Hypot             hetical protein 5 (ORF-9b)                                   SCOP domains
               CATH domains ----------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee...eeeee.-------------...ee.eee......eeeeeee.........eeeee.....ee..hhhhh..eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------V---------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------- Transcript
                  2cme F 10 PPALHLVDPQIQLTIT-------------DPKVYPIILRLGSNLSLSMARRNLDSLEARAFQSTPIVVQMTKLATTEELPDEFVVVTAK 98
                                    19     |   -        39        49        59        69        79        89         
                                          25            39

Chain G from PDB  Type:PROTEIN  Length:77
 aligned with ORF9B_CVHSA | P59636 from UniProtKB/Swiss-Prot  Length:98

    Alignment length:90
                                    18        28        38        48        58        68        78        88        98
           ORF9B_CVHSA    9 VPPALHLVDPQIQLTITRMEDAMGQGQNSADPKVYPIILRLGSQLSLSMARRNLDSLEARAFQSTPIVVQMTKLATTEELPDEFVVVTAK 98
               SCOP domains d2cmeg_ G: Hypoth             etical protein 5 (ORF-9b)                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeeeeeeeee.-------------...eeeeee......eeeeee.............ee.....ee.........eeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------V---------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                  2cme G  9 VPPALHLVDPQIQLTIT-------------DPKVYPIILRLGSNLSLSMARRNLDSLEARAFQSTPIVVQMTKLATTEELPDEFVVVTAK 98
                                    18      |  -         -|       48        58        68        78        88        98
                                           25            39

Chain G from PDB  Type:PROTEIN  Length:77
 aligned with Q19QV9_CVHSA | Q19QV9 from UniProtKB/TrEMBL  Length:98

    Alignment length:90
                                    18        28        38        48        58        68        78        88        98
          Q19QV9_CVHSA    9 VPPALHLVDPQIQLTITRMEDAMGQGQNSADPKVYPIILRLGSQLSLSMARRNLDSLEARAFQSTPIVVQMTKLATTEELPDEFVVVTAK 98
               SCOP domains d2cmeg_ G: Hypoth             etical protein 5 (ORF-9b)                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeeeeeeeee.-------------...eeeeee......eeeeee.............ee.....ee.........eeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------V---------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                  2cme G  9 VPPALHLVDPQIQLTIT-------------DPKVYPIILRLGSNLSLSMARRNLDSLEARAFQSTPIVVQMTKLATTEELPDEFVVVTAK 98
                                    18      |  -         -|       48        58        68        78        88        98
                                           25            39

Chain H from PDB  Type:PROTEIN  Length:76
 aligned with ORF9B_CVHSA | P59636 from UniProtKB/Swiss-Prot  Length:98

    Alignment length:89
                                    19        29        39        49        59        69        79        89         
           ORF9B_CVHSA   10 PPALHLVDPQIQLTITRMEDAMGQGQNSADPKVYPIILRLGSQLSLSMARRNLDSLEARAFQSTPIVVQMTKLATTEELPDEFVVVTAK 98
               SCOP domains d2cmeh_ H: Hypot             hetical protein 5 (ORF-9b)                                   SCOP domains
               CATH domains ----------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee...eeeee.-------------..eee.eee......eeeeeee.........eeeee.....ee..hhhhh..eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------V---------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------- Transcript
                  2cme H 10 PPALHLVDPQIQLTIT-------------DPKVYPIILRLGSNLSLSMARRNLDSLEARAFQSTPIVVQMTKLATTEELPDEFVVVTAK 98
                                    19     |   -        39        49        59        69        79        89         
                                          25            39

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: SARS ORF9b-like (1)

Superfamily: 'SARS ORF9b-like (1)

Family: SARS ORF9b-like (1)

Protein domain: Hypothetical protein 5 (ORF-9b) (1)

SARS coronavirus [TaxId: 227859] (1)

1a	d2cmea1	A:9-98
1b	d2cmeb1	B:9-98
1c	d2cmec_	C:
1d	d2cmed_	D:
1e	d2cmee1	E:9-98
1f	d2cmef_	F:
1g	d2cmeg_	G:
1h	d2cmeh_	H:

(no "CATH Domain" information available for 2CME)

(no "Pfam Domain" information available for 2CME)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G,H (ORF9B_CVHSA | P59636)

molecular function
	GO:0003674	molecular_function	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
biological process
	GO:0008150	biological_process	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
cellular component
	GO:0005575	cellular_component	The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.
	GO:0030430	host cell cytoplasm	The cytoplasm of a host cell.
	GO:0044161	host cell cytoplasmic vesicle	A vesicle formed of membrane or protein, found in the cytoplasm of a host cell.
	GO:0044162	host cell cytoplasmic vesicle membrane	The lipid bilayer surrounding a host cell cytoplasmic vesicle.
	GO:0033644	host cell membrane	Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Chain B,E,G (Q19QV9_CVHSA | Q19QV9)

Asymmetric Unit
	Complete Structure
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	Cis Peptide Bonds
		Pro A:10 - Pro A:11	[ RasMol ]
		Pro F:10 - Pro F:11	[ RasMol ]
		Pro H:10 - Pro H:11	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]
		Biological Unit 4	[ Jena3D ]

Jmol
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Access by PDB/NDB ID
	2cme
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
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Access by UniProt ID/Accession number
	ORF9B_CVHSA \| P59636
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
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	Q19QV9_CVHSA \| Q19QV9
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		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/TrEMBL

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	ORF9B_CVHSA \| P59636
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	Q19QV9_CVHSA \| Q19QV9
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

(no "Entries Sharing at Least One Protein Chain" available for 2CME)

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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 4)

Sites (3, 3)

SS Bonds (0, 0)

Cis Peptide Bonds (3, 3)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (1, 8)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 8)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (8, 8)

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Databases

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File