2CIY - JenaLib

Title :   CHLOROPEROXIDASE COMPLEXED WITH CYANIDE AND DMSO

Authors :   K. Kuhnel, W. Blankenfeldt, J. Terner, I. Schlichting

Date :   26 Mar 06 (Deposition) - 12 Jun 06 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.70

Chains :   Asym./Biol. Unit : A

Keywords :   Oxidoreductase, Heme, Iron, Chloride, Manganese, Peroxidase, Pyrrolidone Carboxylic Acid, Glycoprotein, Metal-Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. Kuhnel, W. Blankenfeldt, J. Terner, I. Schlichting
Crystal Structures Of Chloroperoxidase With Its Bound Substrates And Complexed With Formate, Acetate, And Nitrate.
J. Biol. Chem. V. 281 23990 2006
PubMed-ID: 16790441 | Reference-DOI: 10.1074/JBC.M603166200

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (9, 26)

Sites (25, 25)

Asymmetric Unit (25, 25)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	PRO A:9 , TYR A:10 , ASN A:12 , HOH A:2370 , HOH A:2371 , HOH A:2372	BINDING SITE FOR RESIDUE NAG A 512
02	AC2	SOFTWARE	ARG A:46 , ASN A:93 , THR A:95 , LEU A:281 , NAG A:594 , HOH A:2374 , HOH A:2375 , HOH A:2376	BINDING SITE FOR RESIDUE NAG A 593
03	AC3	SOFTWARE	PHE A:279 , LEU A:280 , LEU A:281 , NAG A:593 , HOH A:2157 , HOH A:2340	BINDING SITE FOR RESIDUE NAG A 594
04	AC4	SOFTWARE	TYR A:212 , ASN A:216 , HIS A:222 , LEU A:294 , ASP A:298 , NAG A:717 , HOH A:2377 , HOH A:2378 , HOH A:2379	BINDING SITE FOR RESIDUE NAG A 716
05	AC5	SOFTWARE	HIS A:222 , LEU A:223 , PRO A:292 , NAG A:716 , HOH A:2359 , HOH A:2379	BINDING SITE FOR RESIDUE NAG A 717
06	AC6	SOFTWARE	THR A:238 , SER A:239 , GLU A:266 , MAN A:741 , MAN A:742 , HOH A:2326 , HOH A:2380 , HOH A:2381	BINDING SITE FOR RESIDUE MAN A 738
07	AC7	SOFTWARE	TYR A:150 , ASP A:200 , GLU A:201 , PHE A:236 , SER A:239 , MAN A:742 , HOH A:2269 , HOH A:2270 , HOH A:2271	BINDING SITE FOR RESIDUE MAN A 739
08	AC8	SOFTWARE	PRO A:178 , ASN A:181 , VAL A:182 , THR A:238 , SER A:241 , SER A:242 , LEU A:245 , GLY A:264 , ALA A:265 , MAN A:738 , MAN A:742 , HOH A:2383 , HOH A:2384 , HOH A:2388	BINDING SITE FOR RESIDUE MAN A 741
09	AC9	SOFTWARE	SER A:239 , SER A:242 , ALA A:243 , ALA A:246 , MAN A:738 , MAN A:739 , MAN A:741 , HOH A:2385 , HOH A:2386 , HOH A:2387 , HOH A:2388	BINDING SITE FOR RESIDUE MAN A 742
10	BC1	SOFTWARE	ASP A:152 , GLU A:155 , THR A:250 , HOH A:2231 , HOH A:2389 , HOH A:2390	BINDING SITE FOR RESIDUE MAN A 750
11	BC2	SOFTWARE	GLU A:155 , GLN A:159 , SER A:251 , PRO A:253 , HOH A:2389 , HOH A:2391	BINDING SITE FOR RESIDUE MAN A 751
12	BC3	SOFTWARE	VAL A:249 , THR A:252 , ILE A:261	BINDING SITE FOR RESIDUE MAN A 752
13	BC4	SOFTWARE	THR A:252 , SER A:254 , HOH A:2319	BINDING SITE FOR RESIDUE MAN A 754
14	BC5	SOFTWARE	SER A:271 , ALA A:273	BINDING SITE FOR RESIDUE MAN A 771
15	BC6	SOFTWARE	THR A:277	BINDING SITE FOR RESIDUE MAN A 777
16	BC7	SOFTWARE	THR A:283 , MAN A:784	BINDING SITE FOR RESIDUE MAN A 783
17	BC8	SOFTWARE	THR A:283 , ASN A:284 , MAN A:783 , HOH A:2345 , HOH A:2394	BINDING SITE FOR RESIDUE MAN A 784
18	BC9	SOFTWARE	THR A:293 , HOH A:2395	BINDING SITE FOR RESIDUE MAN A 793
19	CC1	SOFTWARE	GLU A:104 , HIS A:105 , SER A:108 , HEM A:396 , HOH A:2367 , HOH A:2368	BINDING SITE FOR RESIDUE MN A 301
20	CC2	SOFTWARE	ALA A:265 , HOH A:2122 , HOH A:2254	BINDING SITE FOR RESIDUE BR A 800
21	CC3	SOFTWARE	GLN A:116	BINDING SITE FOR RESIDUE BR A 801
22	CC4	SOFTWARE	PHE A:103 , GLU A:183 , PHE A:186 , HEM A:396 , DMS A:3036	BINDING SITE FOR RESIDUE CYN A1802
23	CC5	SOFTWARE	PRO A:28 , CYS A:29 , ALA A:31 , LEU A:32 , PHE A:57 , ILE A:63 , ILE A:68 , ALA A:71 , LEU A:72 , LEU A:97 , PHE A:103 , GLU A:104 , HIS A:105 , SER A:108 , PHE A:109 , SER A:110 , GLU A:183 , PHE A:186 , ILE A:187 , PHE A:214 , MN A:301 , CYN A:1802 , HOH A:2067 , HOH A:2367 , HOH A:2369	BINDING SITE FOR RESIDUE HEM A 396
24	CC6	SOFTWARE	ILE A:179 , ALA A:267 , VAL A:268 , LEU A:270 , HOH A:2397 , HOH A:2398	BINDING SITE FOR RESIDUE EDO A 802
25	CC7	SOFTWARE	LEU A:70 , ASN A:74 , PHE A:103 , VAL A:182 , CYN A:1802 , HOH A:2129	BINDING SITE FOR RESIDUE DMS A3036

SS Bonds (1, 1)

Cis Peptide Bonds (3, 3)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 1)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:299
 aligned with PRXC_LEPFU | P04963 from UniProtKB/Swiss-Prot  Length:373

    Alignment length:299
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310         
           PRXC_LEPFU    21 QEPGSGIGYPYDNNTLPYVAPGPTDSRAPCPALNALANHGYIPHDGRAISRETLQNAFLNHMGIANSVIELALTNAFVVCEYVTGSDCGDSLVNLTLLAEPHAFEHDHSFSRKDYKQGVANSNDFIDNRNFDAETFQTSLDVVAGKTHFDYADMNEIRLQRESLSNELDFPGWFTESKPIQNVESGFIFALVSDFNLPDNDENPLVRIDWWKYWFTNESFPYHLGWHPPSPAREIEFVTSASSAVLAASVTSTPSSLPSGAIGPGAEAVPLSFASTMTPFLLATNAPYYAQDPTLGPND 319
               SCOP domains d2ciya1 A:0-119 Cloroperoxidase                                                                                         d2ciya2 A:120-298 Cloroperoxidase                                                                                                                                                   SCOP domains
               CATH domains -2ciyA00 A:1-298 Chloroperoxidase                                                                                                                                                                                                                                                                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh.......................hhhhhhhhhh.......eeehhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh......eee.hhhhh...............................hhhhhhhhhhhhh...eehhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh............eehhhhhhhhhhh..hhhhh........hhhhhhhhhhhhhhh................................................... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------HEME_HALOPEROXIDASE  PDB: A:13-245 UniProt: 34-266                                                                                                                                                                                       ----------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ciy A   0 xEPGSGIGYPYDNNTLPYVAPGPTDSRAPCPALNALANHGYIPHDGRAISRETLQNAFLNHMGIANSVIELALTNAFVVCEYVTGSDCGDSLVNLTLLAEPHAFEHDHSFSRKDYKQGVANSNDFIDNRNFDAETFQTSLDVVAGKTHFDYADMNEIRLQRESLSNELDFPGWFTESKPIQNVESGFIFALVSDFNLPDNDENPLVRIDWWKYWFTNESFPYHLGWHPPSPAREIEFVTSASSAVLAASVTSTPSSLPSGAIGPGAEAVPLSFASTMTPFLLATNAPYYAQDPTLGPND 298
                            |        9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289         
                            |                                                                                                                                                                                                                                                                                                          
                            0-PCA

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (1, 1)

Pfam Domains (0, 0)

Gene Ontology (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (PRXC_LEPFU | P04963)

molecular function
	GO:0016691	chloride peroxidase activity	Catalysis of the reaction: 2 R-H + 2 chloride + hydrogen peroxide = 2 R-Cl + 2 H2O.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0004601	peroxidase activity	Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O.
biological process
	GO:0098869	cellular oxidant detoxification	Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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	Cis Peptide Bonds
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		Tyr A:8 - Pro A:9	[ RasMol ]

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